Examples with OrcidMessage org.orcid.jaxb.model.message.OrcidMessage used on opensource projects

Example 66 with OrcidMessage

use of org.orcid.jaxb.model.message.OrcidMessage in project ORCID-Source by ORCID.

the class T2OrcidApiServiceVersionedDelegatorImpl method addFunding.

@Override
public Response addFunding(UriInfo uriInfo, String orcid, OrcidMessage orcidMessage) {
    validateIncomingMessage(orcidMessage, orcid);
    OrcidMessage upgradedMessage = upgradeMessage(orcidMessage);
    return t2OrcidApiServiceDelegator.addFunding(uriInfo, orcid, upgradedMessage);
}

Example 67 with OrcidMessage

use of org.orcid.jaxb.model.message.OrcidMessage in project ORCID-Source by ORCID.

the class T2OrcidApiServiceVersionedDelegatorImpl method checkProfileStatus.

/**
     * Verify if the orcid message is deprecated, if so, builds a reponse object
     * with 301 status
     * 
     * @param response
     *            The current response object.
     * @return a response object.
     * */
protected Response checkProfileStatus(Response response) {
    OrcidMessage orcidMessage = (OrcidMessage) response.getEntity();
    if (orcidMessage != null && orcidMessage.getOrcidProfile() != null && orcidMessage.getOrcidProfile().getOrcidDeprecated() != null) {
        Map<String, String> params = new HashMap<String, String>();
        params.put(OrcidDeprecatedException.ORCID, orcidMessage.getOrcidProfile().getOrcidDeprecated().getPrimaryRecord().getOrcidIdentifier().getUri());
        params.put(OrcidDeprecatedException.DEPRECATED_DATE, orcidMessage.getOrcidProfile().getOrcidDeprecated().getDate().getValue().toXMLFormat());
        throw new OrcidDeprecatedException(params);
    }
    return response;
}

Example 68 with OrcidMessage

use of org.orcid.jaxb.model.message.OrcidMessage in project ORCID-Source by ORCID.

the class OrcidApiAuthorizationSecurityAspect method visibilityResponseFilter.

@AfterReturning(pointcut = "@annotation(accessControl)", returning = "response")
public void visibilityResponseFilter(Response response, AccessControl accessControl) {
    if (accessControl.requestComesFromInternalApi()) {
        return;
    }
    Object entity = response.getEntity();
    if (entity != null && OrcidMessage.class.isAssignableFrom(entity.getClass())) {
        OrcidMessage orcidMessage = (OrcidMessage) entity;
        //If it is search results, don't filter them, just return them
        if (orcidMessage.getOrcidSearchResults() != null) {
            return;
        }
        // get the client id
        Object authentication = getAuthentication();
        Set<Visibility> visibilities = new HashSet<Visibility>();
        if (allowAnonymousAccess((Authentication) authentication, accessControl)) {
            visibilities.add(Visibility.PUBLIC);
        } else {
            visibilities = permissionChecker.obtainVisibilitiesForAuthentication(getAuthentication(), accessControl.requiredScope(), orcidMessage);
        }
        //If the message contains a bio, and the given name is filtered, restore it as an empty space
        boolean setEmptyGivenNameIfFiltered = false;
        if (orcidMessage.getOrcidProfile() != null) {
            if (orcidMessage.getOrcidProfile() != null && orcidMessage.getOrcidProfile().getOrcidBio() != null) {
                setEmptyGivenNameIfFiltered = true;
            }
        }
        ScopePathType requiredScope = accessControl.requiredScope();
        // If the required scope is */read-limited or */update
        if (isUpdateOrReadScope(requiredScope)) {
            // if it should be able to
            if (OrcidOAuth2Authentication.class.isAssignableFrom(authentication.getClass())) {
                OrcidOAuth2Authentication orcidAuth = (OrcidOAuth2Authentication) getAuthentication();
                OAuth2Request authorization = orcidAuth.getOAuth2Request();
                String clientId = authorization.getClientId();
                // #1: Get the user orcid
                String userOrcid = getUserOrcidFromOrcidMessage(orcidMessage);
                // #2: Evaluate the scope to know which field to filter
                boolean allowWorks = false;
                boolean allowFunding = false;
                boolean allowAffiliations = false;
                // Get the update equivalent scope, if it is reading, but,
                // doesnt have the read permissions, check if it have the
                // update permissions
                ScopePathType equivalentUpdateScope = getEquivalentUpdateScope(requiredScope);
                if (requiredScope.equals(ScopePathType.READ_LIMITED)) {
                    if (hasScopeEnabled(clientId, userOrcid, ScopePathType.ORCID_WORKS_READ_LIMITED.getContent(), ScopePathType.ORCID_WORKS_UPDATE.getContent()))
                        allowWorks = true;
                    if (hasScopeEnabled(clientId, userOrcid, ScopePathType.FUNDING_READ_LIMITED.getContent(), ScopePathType.FUNDING_UPDATE.getContent()))
                        allowFunding = true;
                    if (hasScopeEnabled(clientId, userOrcid, ScopePathType.AFFILIATIONS_READ_LIMITED.getContent(), ScopePathType.AFFILIATIONS_UPDATE.getContent()))
                        allowAffiliations = true;
                } else if (requiredScope.equals(ScopePathType.ORCID_WORKS_UPDATE) || requiredScope.equals(ScopePathType.ORCID_WORKS_READ_LIMITED)) {
                    // works
                    if (hasScopeEnabled(clientId, userOrcid, requiredScope.getContent(), equivalentUpdateScope == null ? null : equivalentUpdateScope.getContent()))
                        // If so, allow him to see private works
                        allowWorks = true;
                } else if (requiredScope.equals(ScopePathType.FUNDING_UPDATE) || requiredScope.equals(ScopePathType.FUNDING_READ_LIMITED)) {
                    // funding
                    if (hasScopeEnabled(clientId, userOrcid, requiredScope.getContent(), equivalentUpdateScope == null ? null : equivalentUpdateScope.getContent()))
                        // If so, allow him to see private funding
                        allowFunding = true;
                } else if (requiredScope.equals(ScopePathType.AFFILIATIONS_UPDATE) || requiredScope.equals(ScopePathType.AFFILIATIONS_READ_LIMITED)) {
                    // affiliations
                    if (hasScopeEnabled(clientId, userOrcid, requiredScope.getContent(), equivalentUpdateScope == null ? null : equivalentUpdateScope.getContent()))
                        // If so, allow him to see private affiliations
                        allowAffiliations = true;
                }
                visibilityFilter.filter(orcidMessage, clientId, allowWorks, allowFunding, allowAffiliations, visibilities.toArray(new Visibility[visibilities.size()]));
            } else {
                visibilityFilter.filter(orcidMessage, null, false, false, false, visibilities.toArray(new Visibility[visibilities.size()]));
            }
        } else {
            visibilityFilter.filter(orcidMessage, null, false, false, false, visibilities.toArray(new Visibility[visibilities.size()]));
        }
        //If the given name was set at the beginning and now is filtered, it means we should restore it as an empty field
        if (setEmptyGivenNameIfFiltered) {
            if (orcidMessage.getOrcidProfile() != null) {
                if (orcidMessage.getOrcidProfile().getOrcidBio() == null) {
                    orcidMessage.getOrcidProfile().setOrcidBio(new OrcidBio());
                }
                if (orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails() == null) {
                    orcidMessage.getOrcidProfile().getOrcidBio().setPersonalDetails(new PersonalDetails());
                }
            }
        }
        //Filter given or family names visibility 
        if (orcidMessage.getOrcidProfile() != null) {
            if (orcidMessage.getOrcidProfile().getOrcidBio() != null) {
                if (orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails() != null) {
                    if (orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails().getGivenNames() != null) {
                        orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails().getGivenNames().setVisibility(null);
                    } else {
                        //Null given names could break client integrations, so, lets return an empty string
                        GivenNames empty = new GivenNames();
                        empty.setContent(StringUtils.EMPTY);
                        orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails().setGivenNames(empty);
                    }
                    if (orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails().getFamilyName() != null) {
                        orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails().getFamilyName().setVisibility(null);
                    }
                }
            }
        }
        //replace section visibilities now we may have filtered items
        if (orcidMessage.getOrcidProfile() != null) {
            if (orcidMessage.getOrcidProfile().getOrcidBio() != null) {
                if (orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails() != null) {
                    OtherNames n = orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails().getOtherNames();
                    if (n != null) {
                        n.setVisibility(getMostFromCollection(n.getOtherName()));
                    }
                }
                ExternalIdentifiers ids = orcidMessage.getOrcidProfile().getOrcidBio().getExternalIdentifiers();
                if (ids != null) {
                    ids.setVisibility(getMostFromCollection(ids.getExternalIdentifier()));
                }
                Keywords kws = orcidMessage.getOrcidProfile().getOrcidBio().getKeywords();
                if (kws != null) {
                    kws.setVisibility(getMostFromCollection(kws.getKeyword()));
                }
                ResearcherUrls urls = orcidMessage.getOrcidProfile().getOrcidBio().getResearcherUrls();
                if (urls != null) {
                    urls.setVisibility(getMostFromCollection(urls.getResearcherUrl()));
                }
            }
        }
    }
}

Example 69 with OrcidMessage

use of org.orcid.jaxb.model.message.OrcidMessage in project ORCID-Source by ORCID.

the class JpaJaxbEntityAdapterToOrcidProfileTest method testToOrcidProfileWithNewWayOfDoingEmails.

@Test
@Transactional(propagation = Propagation.REQUIRES_NEW)
public void testToOrcidProfileWithNewWayOfDoingEmails() throws SAXException, IOException {
    ProfileEntity profileEntity = profileDao.find("4444-4444-4444-4445");
    long start = System.currentTimeMillis();
    OrcidProfile orcidProfile = adapter.toOrcidProfile(profileEntity);
    System.out.println("Took: " + Long.toString(System.currentTimeMillis() - start));
    ContactDetails contactDetails = orcidProfile.getOrcidBio().getContactDetails();
    Email primaryEmail = contactDetails.retrievePrimaryEmail();
    assertNotNull(primaryEmail);
    assertTrue(primaryEmail.isPrimary());
    assertTrue(primaryEmail.isCurrent());
    assertFalse(primaryEmail.isVerified());
    assertEquals(Visibility.PRIVATE, primaryEmail.getVisibility());
    assertEquals("andrew@timothy.com", primaryEmail.getValue());
    assertEquals("4444-4444-4444-4441", primaryEmail.getSource());
    Email nonPrimaryEmail = contactDetails.getEmailByString("andrew2@timothy.com");
    assertNotNull(nonPrimaryEmail);
    assertFalse(nonPrimaryEmail.isPrimary());
    assertFalse(nonPrimaryEmail.isCurrent());
    assertFalse(nonPrimaryEmail.isVerified());
    assertEquals(Visibility.PRIVATE, nonPrimaryEmail.getVisibility());
    assertEquals("andrew2@timothy.com", nonPrimaryEmail.getValue());
    assertEquals("4444-4444-4444-4441", nonPrimaryEmail.getSource());
    assertEquals(2, contactDetails.getEmail().size());
    validateAgainstSchema(new OrcidMessage(orcidProfile));
}

Example 70 with OrcidMessage

use of org.orcid.jaxb.model.message.OrcidMessage in project ORCID-Source by ORCID.

the class JpaJaxbEntityAdapterToOrcidProfileTest method testToOrcidProfile.

@Test
@Transactional(propagation = Propagation.REQUIRES_NEW)
public void testToOrcidProfile() throws SAXException, IOException {
    ProfileEntity profileEntity = profileDao.find("4444-4444-4444-4443");
    long start = System.currentTimeMillis();
    OrcidProfile orcidProfile = adapter.toOrcidProfile(profileEntity);
    System.out.println("Took: " + Long.toString(System.currentTimeMillis() - start));
    System.out.println(orcidProfile);
    checkOrcidProfile(orcidProfile);
    validateAgainstSchema(new OrcidMessage(orcidProfile));
}