Examples with OrcidWorks org.orcid.jaxb.model.message.OrcidWorks used on opensource projects

Example 36 with OrcidWorks

use of org.orcid.jaxb.model.message.OrcidWorks in project ORCID-Source by ORCID.

the class OrcidProfileManagerImplTest method testAddOrcidWorksWhenDefaultVisibilityIsPrivate.

@Test
@Transactional
public void testAddOrcidWorksWhenDefaultVisibilityIsPrivate() {
    OrcidProfile profile1 = createBasicProfile();
    OrcidHistory history = new OrcidHistory();
    history.setSubmissionDate(new SubmissionDate(DateUtils.convertToXMLGregorianCalendar(new Date())));
    profile1.setOrcidHistory(history);
    history.setClaimed(new Claimed(true));
    profile1.getOrcidInternal().getPreferences().setActivitiesVisibilityDefault(new ActivitiesVisibilityDefault(Visibility.PRIVATE));
    orcidProfileManager.createOrcidProfile(profile1, false, false);
    OrcidProfile profile2 = new OrcidProfile();
    profile2.setOrcidIdentifier(TEST_ORCID);
    OrcidWorks orcidWorks = new OrcidWorks();
    profile2.setOrcidWorks(orcidWorks);
    WorkTitle workTitle1 = new WorkTitle();
    workTitle1.setTitle(new Title("Another Title"));
    workTitle1.setSubtitle(new Subtitle("Journal of Cloud Spotting"));
    OrcidWork work1 = createWork1(workTitle1);
    Source source = new Source(TEST_ORCID);
    work1.setSource(source);
    orcidWorks.getOrcidWork().add(work1);
    WorkTitle workTitle2 = new WorkTitle();
    workTitle2.setTitle(new Title("New Title"));
    workTitle2.setSubtitle(new Subtitle("Another New subtitle"));
    OrcidWork work2 = createWork2(workTitle2);
    orcidWorks.getOrcidWork().add(work2);
    // Try to add a duplicate
    WorkTitle workTitle3 = new WorkTitle();
    workTitle3.setTitle(new Title("Further Title"));
    workTitle3.setSubtitle(new Subtitle("Further subtitle"));
    OrcidWork work3 = createWork3(workTitle3);
    work3.setVisibility(Visibility.LIMITED);
    orcidWorks.getOrcidWork().add(work3);
    orcidProfileManager.addOrcidWorks(profile2);
    OrcidProfile resultProfile = orcidProfileManager.retrieveOrcidProfile(TEST_ORCID);
    assertEquals("Will", resultProfile.getOrcidBio().getPersonalDetails().getGivenNames().getContent());
    List<OrcidWork> works = resultProfile.retrieveOrcidWorks().getOrcidWork();
    assertEquals(4, works.size());
    assertEquals("Another Title", works.get(0).getWorkTitle().getTitle().getContent());
    assertEquals("Journal of Cloud Spotting", works.get(0).getWorkTitle().getSubtitle().getContent());
    for (OrcidWork work : works) {
        if ("Test Title".equals(work.getWorkTitle().getTitle().getContent()))
            assertEquals(Visibility.PRIVATE, work.getVisibility());
        else
            assertEquals(Visibility.PRIVATE, work.getVisibility());
    }
}

Example 37 with OrcidWorks

use of org.orcid.jaxb.model.message.OrcidWorks in project ORCID-Source by ORCID.

the class OrcidProfileManagerImplTest method testUpdatePersonalInformationRemovesOrcidIndexFields.

@Test
@Transactional
@Rollback(true)
public void testUpdatePersonalInformationRemovesOrcidIndexFields() throws Exception {
    // re-use the createFull method but add some extra criteria so we can
    // use our specific orcidAllSolrFieldsPopulatedForSave matcher
    OrcidProfile profile = createFullOrcidProfile();
    OtherNames otherNames = new OtherNames();
    otherNames.getOtherName().add(new OtherName("Stan", null));
    otherNames.getOtherName().add(new OtherName("Willis", null));
    profile.getOrcidBio().getPersonalDetails().setOtherNames(otherNames);
    OrcidWorks orcidWorks = new OrcidWorks();
    profile.setOrcidWorks(orcidWorks);
    WorkTitle singleWorkTitle = new WorkTitle();
    singleWorkTitle.setTitle(new Title("Single works"));
    singleWorkTitle.setSubtitle(new Subtitle("Single works"));
    OrcidWork orcidWork = createWork1(singleWorkTitle);
    // TODO JB some doi testing here?
    // orcidWork.getElectronicResourceNum().add(new
    // ElectronicResourceNum("10.1016/S0021-8502(00)90373-2",
    // ElectronicResourceNumType.DOI));
    orcidWorks.getOrcidWork().add(orcidWork);
    orcidProfileManager.createOrcidProfile(profile, false, false);
    // now negate all fields that form part of a solr query, leaving only
    // the orcid itself
    // we do this by passing through an orcid missing the fields from an
    // OrcidSolrDocument
    OrcidProfile negatedProfile = createBasicProfile();
    negatedProfile.getOrcidBio().getPersonalDetails().setFamilyName(null);
    negatedProfile.getOrcidBio().getPersonalDetails().setGivenNames(null);
    negatedProfile.getOrcidBio().getPersonalDetails().setCreditName(null);
    negatedProfile.getOrcidBio().getPersonalDetails().setOtherNames(null);
    negatedProfile.getOrcidActivities().setAffiliations(null);
    orcidProfileManager.updateOrcidBio(negatedProfile);
    assertEquals(IndexingStatus.PENDING, profileDao.find(TEST_ORCID).getIndexingStatus());
}

Example 38 with OrcidWorks

use of org.orcid.jaxb.model.message.OrcidWorks in project ORCID-Source by ORCID.

the class OrcidProfileManagerImplTest method testAddOrcidWorksWhenDefaultVisibilityIsLimited.

@Test
@Transactional
@Rollback(true)
public void testAddOrcidWorksWhenDefaultVisibilityIsLimited() {
    OrcidProfile profile1 = createBasicProfile();
    OrcidHistory history = new OrcidHistory();
    history.setSubmissionDate(new SubmissionDate(DateUtils.convertToXMLGregorianCalendar(new Date())));
    profile1.setOrcidHistory(history);
    history.setClaimed(new Claimed(true));
    profile1.getOrcidInternal().getPreferences().setActivitiesVisibilityDefault(new ActivitiesVisibilityDefault(Visibility.LIMITED));
    orcidProfileManager.createOrcidProfile(profile1, false, false);
    OrcidProfile profile2 = new OrcidProfile();
    profile2.setOrcidIdentifier(TEST_ORCID);
    OrcidWorks orcidWorks = new OrcidWorks();
    profile2.setOrcidWorks(orcidWorks);
    WorkTitle workTitle1 = new WorkTitle();
    workTitle1.setTitle(new Title("Another Title"));
    workTitle1.setSubtitle(new Subtitle("Journal of Cloud Spotting"));
    OrcidWork work1 = createWork1(workTitle1);
    Source source = new Source(TEST_ORCID);
    work1.setSource(source);
    orcidWorks.getOrcidWork().add(work1);
    WorkTitle workTitle2 = new WorkTitle();
    workTitle2.setTitle(new Title("New Title"));
    workTitle2.setSubtitle(new Subtitle("Another New subtitle"));
    OrcidWork work2 = createWork2(workTitle2);
    orcidWorks.getOrcidWork().add(work2);
    // Try to add a duplicate
    WorkTitle workTitle3 = new WorkTitle();
    workTitle3.setTitle(new Title("Further Title"));
    workTitle3.setSubtitle(new Subtitle("Further subtitle"));
    OrcidWork work3 = createWork3(workTitle3);
    work3.setVisibility(Visibility.LIMITED);
    orcidWorks.getOrcidWork().add(work3);
    orcidProfileManager.addOrcidWorks(profile2);
    OrcidProfile resultProfile = orcidProfileManager.retrieveOrcidProfile(TEST_ORCID);
    assertEquals("Will", resultProfile.getOrcidBio().getPersonalDetails().getGivenNames().getContent());
    List<OrcidWork> works = resultProfile.retrieveOrcidWorks().getOrcidWork();
    assertEquals(4, works.size());
    assertEquals("Another Title", works.get(0).getWorkTitle().getTitle().getContent());
    assertEquals("Journal of Cloud Spotting", works.get(0).getWorkTitle().getSubtitle().getContent());
    for (OrcidWork work : works) {
        if ("Test Title".equals(work.getWorkTitle().getTitle().getContent()))
            assertEquals(Visibility.PRIVATE, work.getVisibility());
        else
            assertEquals(Visibility.LIMITED, work.getVisibility());
    }
}

Example 39 with OrcidWorks

use of org.orcid.jaxb.model.message.OrcidWorks in project ORCID-Source by ORCID.

the class OrcidSearchManagerImpl method buildSearchResultsFromPublicProfile.

private List<OrcidSearchResult> buildSearchResultsFromPublicProfile(List<OrcidSolrResult> solrResults) {
    List<OrcidSearchResult> orcidSearchResults = new ArrayList<OrcidSearchResult>();
    for (OrcidSolrResult solrResult : solrResults) {
        OrcidMessage orcidMessage = null;
        String orcid = solrResult.getOrcid();
        try {
            orcidSecurityManager.checkProfile(orcid);
        } catch (DeactivatedException | LockedException | OrcidDeprecatedException x) {
            OrcidSearchResult orcidSearchResult = new OrcidSearchResult();
            RelevancyScore relevancyScore = new RelevancyScore();
            relevancyScore.setValue(solrResult.getRelevancyScore());
            orcidSearchResult.setRelevancyScore(relevancyScore);
            OrcidProfile orcidProfile = new OrcidProfile();
            orcidProfile.setOrcidIdentifier(new OrcidIdentifier(jpaJaxbAdapter.getOrcidIdBase(orcid)));
            OrcidHistory history = new OrcidHistory();
            Date recordLastModified = profileDaoReadOnly.retrieveLastModifiedDate(orcid);
            history.setLastModifiedDate(new LastModifiedDate(DateUtils.convertToXMLGregorianCalendar(recordLastModified)));
            orcidProfile.setOrcidHistory(history);
            orcidSearchResult.setOrcidProfile(orcidProfile);
            orcidSearchResults.add(orcidSearchResult);
            continue;
        }
        if (cachingSource.equals(SOLR)) {
            try (Reader reader = solrDao.findByOrcidAsReader(orcid)) {
                if (reader != null) {
                    BufferedReader br = new BufferedReader(reader);
                    orcidMessage = OrcidMessage.unmarshall(br);
                }
            } catch (IOException e) {
                throw new OrcidSearchException("Error closing record stream from solr search results for orcid: " + orcid, e);
            }
        }
        OrcidProfile orcidProfile = null;
        if (orcidMessage == null) {
            // Fall back to DB
            orcidProfile = orcidProfileCacheManager.retrievePublicBio(orcid);
        } else {
            orcidProfile = orcidMessage.getOrcidProfile();
        }
        if (orcidProfile != null) {
            OrcidSearchResult orcidSearchResult = new OrcidSearchResult();
            RelevancyScore relevancyScore = new RelevancyScore();
            relevancyScore.setValue(solrResult.getRelevancyScore());
            orcidSearchResult.setRelevancyScore(relevancyScore);
            OrcidWorks orcidWorksTitlesOnly = new OrcidWorks();
            OrcidWorks fullOrcidWorks = orcidProfile.retrieveOrcidWorks();
            if (fullOrcidWorks != null && !fullOrcidWorks.getOrcidWork().isEmpty()) {
                for (OrcidWork fullOrcidWork : fullOrcidWorks.getOrcidWork()) {
                    OrcidWork orcidWorkSubset = new OrcidWork();
                    orcidWorkSubset.setVisibility(fullOrcidWork.getVisibility());
                    orcidWorkSubset.setWorkTitle(fullOrcidWork.getWorkTitle());
                    orcidWorkSubset.setWorkExternalIdentifiers(fullOrcidWork.getWorkExternalIdentifiers());
                    orcidWorksTitlesOnly.getOrcidWork().add(orcidWorkSubset);
                }
            }
            FundingList reducedFundings = new FundingList();
            FundingList fullOrcidFundings = orcidProfile.retrieveFundings();
            if (fullOrcidFundings != null && !fullOrcidFundings.getFundings().isEmpty()) {
                for (Funding fullOrcidFunding : fullOrcidFundings.getFundings()) {
                    Funding reducedFunding = new Funding();
                    reducedFunding.setVisibility(fullOrcidFunding.getVisibility());
                    reducedFunding.setDescription(fullOrcidFunding.getDescription());
                    reducedFunding.setTitle(fullOrcidFunding.getTitle());
                    reducedFundings.getFundings().add(reducedFunding);
                }
            }
            orcidProfile.setOrcidWorks(orcidWorksTitlesOnly);
            orcidProfile.setFundings(reducedFundings);
            orcidSearchResult.setOrcidProfile(orcidProfile);
            orcidSearchResults.add(orcidSearchResult);
        }
    }
    return orcidSearchResults;
}

Example 40 with OrcidWorks

use of org.orcid.jaxb.model.message.OrcidWorks in project ORCID-Source by ORCID.

the class Jpa2JaxbAdapterTest method checkSourceOnAllElements.

@Test
@Transactional
public void checkSourceOnAllElements() {
    ProfileEntity profileEntity = profileDao.find(userOrcid);
    assertNotNull(profileEntity);
    assertEquals(userOrcid, profileEntity.getId());
    OrcidProfile orcidProfile = adapter.toOrcidProfile(profileEntity, LoadOptions.ALL);
    assertNotNull(orcidProfile);
    testOrcidIdentifier(orcidProfile.getOrcidIdentifier());
    assertNotNull(orcidProfile.getOrcidActivities());
    // Check works
    OrcidWorks orcidWorks = orcidProfile.getOrcidActivities().getOrcidWorks();
    if (orcidWorks != null && orcidWorks.getOrcidWork() != null && !orcidWorks.getOrcidWork().isEmpty()) {
        for (OrcidWork work : orcidWorks.getOrcidWork()) {
            checkSource(work.getSource(), null);
        }
    }
    // Check affiliations
    Affiliations affiliations = orcidProfile.getOrcidActivities().getAffiliations();
    if (affiliations != null && affiliations.getAffiliation() != null && !affiliations.getAffiliation().isEmpty()) {
        for (Affiliation affiliation : affiliations.getAffiliation()) {
            checkSource(affiliation.getSource(), null);
        }
    }
    // Check fundings
    FundingList fundings = orcidProfile.getOrcidActivities().getFundings();
    if (fundings != null && fundings.getFundings() != null && !fundings.getFundings().isEmpty()) {
        for (Funding funding : fundings.getFundings()) {
            checkSource(funding.getSource(), null);
        }
    }
    assertNotNull(orcidProfile.getOrcidBio());
    // Check external identifiers
    ExternalIdentifiers extIds = orcidProfile.getOrcidBio().getExternalIdentifiers();
    if (extIds != null && extIds.getExternalIdentifier() != null && !extIds.getExternalIdentifier().isEmpty()) {
        for (ExternalIdentifier extId : extIds.getExternalIdentifier()) {
            checkSource(extId.getSource(), null);
        }
    }
}