Examples with WorkGroup org.orcid.jaxb.model.record.summary_rc2.WorkGroup used on opensource projects

Example 1 with WorkGroup

use of org.orcid.jaxb.model.record.summary_rc2.WorkGroup in project ORCID-Source by ORCID.

the class RecordTest method testViewRecordFromPublicAPI.

@Test
public void testViewRecordFromPublicAPI() {
    ClientResponse response = publicV2ApiClient.viewRecordXML(getUser1OrcidId());
    assertNotNull(response);
    assertEquals("invalid " + response, 200, response.getStatus());
    Record record = response.getEntity(Record.class);
    assertNotNull(record);
    assertNotNull(record.getOrcidIdentifier());
    assertEquals(getUser1OrcidId(), record.getOrcidIdentifier().getPath());
    //Check the visibility of every activity that exists
    if (record.getActivitiesSummary() != null) {
        if (record.getActivitiesSummary() != null) {
            //Educations
            if (record.getActivitiesSummary().getEducations() != null) {
                Educations e = record.getActivitiesSummary().getEducations();
                if (e.getSummaries() != null) {
                    for (EducationSummary s : e.getSummaries()) {
                        assertNotNull(s.getSource());
                        assertEquals(Visibility.PUBLIC, s.getVisibility());
                    }
                }
            }
            //Employments
            if (record.getActivitiesSummary().getEmployments() != null) {
                Employments e = record.getActivitiesSummary().getEmployments();
                if (e.getSummaries() != null) {
                    for (EmploymentSummary s : e.getSummaries()) {
                        assertNotNull(s.getSource());
                        assertEquals(Visibility.PUBLIC, s.getVisibility());
                    }
                }
            }
            //Fundings
            if (record.getActivitiesSummary().getFundings() != null) {
                Fundings f = record.getActivitiesSummary().getFundings();
                List<FundingGroup> groups = f.getFundingGroup();
                if (groups != null) {
                    for (FundingGroup fGroup : groups) {
                        List<FundingSummary> summaries = fGroup.getFundingSummary();
                        if (summaries != null) {
                            for (FundingSummary s : summaries) {
                                assertNotNull(s.getSource());
                                assertEquals(Visibility.PUBLIC, s.getVisibility());
                            }
                        }
                    }
                }
            }
            //PeerReviews
            if (record.getActivitiesSummary().getPeerReviews() != null) {
                PeerReviews p = record.getActivitiesSummary().getPeerReviews();
                List<PeerReviewGroup> groups = p.getPeerReviewGroup();
                if (groups != null) {
                    for (PeerReviewGroup pGroup : groups) {
                        List<PeerReviewSummary> summaries = pGroup.getPeerReviewSummary();
                        if (summaries != null) {
                            for (PeerReviewSummary s : summaries) {
                                assertNotNull(s.getSource());
                                assertEquals(Visibility.PUBLIC, s.getVisibility());
                            }
                        }
                    }
                }
            }
            //Works
            if (record.getActivitiesSummary().getWorks() != null) {
                Works w = record.getActivitiesSummary().getWorks();
                List<WorkGroup> groups = w.getWorkGroup();
                if (groups != null) {
                    for (WorkGroup wGroup : groups) {
                        List<WorkSummary> summaries = wGroup.getWorkSummary();
                        if (summaries != null) {
                            for (WorkSummary s : summaries) {
                                assertNotNull(s.getSource());
                                assertEquals(Visibility.PUBLIC, s.getVisibility());
                            }
                        }
                    }
                }
            }
        }
    }
    //Check the visibility of every biography elements that exists
    if (record.getPerson() != null) {
        //Address
        if (record.getPerson().getAddresses() != null) {
            Addresses addresses = record.getPerson().getAddresses();
            List<Address> list = addresses.getAddress();
            if (list != null) {
                for (Address o : list) {
                    assertNotNull(o.getSource());
                    assertEquals(Visibility.PUBLIC, o.getVisibility());
                }
            }
        }
        //Biography
        if (record.getPerson().getBiography() != null) {
            Biography b = record.getPerson().getBiography();
            if (b != null) {
                assertNotNull(b.getVisibility());
                assertEquals(Visibility.PUBLIC, b.getVisibility());
            }
        }
        //Emails
        if (record.getPerson().getEmails() != null) {
            Emails emails = record.getPerson().getEmails();
            List<Email> list = emails.getEmails();
            if (list != null) {
                for (Email e : list) {
                    assertNotNull(e.getVisibility());
                    assertEquals(Visibility.PUBLIC, e.getVisibility());
                }
            }
        }
        //External identifiers
        if (record.getPerson().getExternalIdentifiers() != null) {
            PersonExternalIdentifiers extIds = record.getPerson().getExternalIdentifiers();
            List<PersonExternalIdentifier> list = extIds.getExternalIdentifiers();
            if (list != null) {
                for (PersonExternalIdentifier e : list) {
                    assertEquals(Visibility.PUBLIC, e.getVisibility());
                }
            }
        }
        //Keywords
        if (record.getPerson().getKeywords() != null) {
            Keywords keywords = record.getPerson().getKeywords();
            List<Keyword> list = keywords.getKeywords();
            if (list != null) {
                for (Keyword e : list) {
                    assertEquals(Visibility.PUBLIC, e.getVisibility());
                }
            }
        }
        //Name
        if (record.getPerson().getName() != null) {
            Name name = record.getPerson().getName();
            assertEquals(Visibility.PUBLIC, name.getVisibility());
        }
        //Other names
        if (record.getPerson().getOtherNames() != null) {
            OtherNames otherNames = record.getPerson().getOtherNames();
            List<OtherName> list = otherNames.getOtherNames();
            if (list != null) {
                for (OtherName e : list) {
                    assertEquals(Visibility.PUBLIC, e.getVisibility());
                }
            }
        }
        //Researcher urls
        if (record.getPerson().getResearcherUrls() != null) {
            ResearcherUrls rUrls = record.getPerson().getResearcherUrls();
            List<ResearcherUrl> list = rUrls.getResearcherUrls();
            if (list != null) {
                for (ResearcherUrl e : list) {
                    assertEquals(Visibility.PUBLIC, e.getVisibility());
                }
            }
        }
    }
}

Example 2 with WorkGroup

use of org.orcid.jaxb.model.record.summary_rc2.WorkGroup in project ORCID-Source by ORCID.

the class RecordTest method testViewRecordFromPublicAPI.

@Test
public void testViewRecordFromPublicAPI() {
    ClientResponse response = publicV2ApiClient.viewRecordXML(getUser1OrcidId());
    assertNotNull(response);
    assertEquals("invalid " + response, 200, response.getStatus());
    Record record = response.getEntity(Record.class);
    assertNotNull(record);
    assertNotNull(record.getOrcidIdentifier());
    assertEquals(getUser1OrcidId(), record.getOrcidIdentifier().getPath());
    //Check the visibility of every activity that exists
    if (record.getActivitiesSummary() != null) {
        if (record.getActivitiesSummary() != null) {
            //Educations
            if (record.getActivitiesSummary().getEducations() != null) {
                Educations e = record.getActivitiesSummary().getEducations();
                if (e.getSummaries() != null) {
                    for (EducationSummary s : e.getSummaries()) {
                        assertNotNull(s.getSource());
                        assertEquals(Visibility.PUBLIC, s.getVisibility());
                    }
                }
            }
            //Employments
            if (record.getActivitiesSummary().getEmployments() != null) {
                Employments e = record.getActivitiesSummary().getEmployments();
                if (e.getSummaries() != null) {
                    for (EmploymentSummary s : e.getSummaries()) {
                        assertNotNull(s.getSource());
                        assertEquals(Visibility.PUBLIC, s.getVisibility());
                    }
                }
            }
            //Fundings
            if (record.getActivitiesSummary().getFundings() != null) {
                Fundings f = record.getActivitiesSummary().getFundings();
                List<FundingGroup> groups = f.getFundingGroup();
                if (groups != null) {
                    for (FundingGroup fGroup : groups) {
                        List<FundingSummary> summaries = fGroup.getFundingSummary();
                        if (summaries != null) {
                            for (FundingSummary s : summaries) {
                                assertNotNull(s.getSource());
                                assertEquals(Visibility.PUBLIC, s.getVisibility());
                            }
                        }
                    }
                }
            }
            //PeerReviews
            if (record.getActivitiesSummary().getPeerReviews() != null) {
                PeerReviews p = record.getActivitiesSummary().getPeerReviews();
                List<PeerReviewGroup> groups = p.getPeerReviewGroup();
                if (groups != null) {
                    for (PeerReviewGroup pGroup : groups) {
                        List<PeerReviewSummary> summaries = pGroup.getPeerReviewSummary();
                        if (summaries != null) {
                            for (PeerReviewSummary s : summaries) {
                                assertNotNull(s.getSource());
                                assertEquals(Visibility.PUBLIC, s.getVisibility());
                            }
                        }
                    }
                }
            }
            //Works
            if (record.getActivitiesSummary().getWorks() != null) {
                Works w = record.getActivitiesSummary().getWorks();
                List<WorkGroup> groups = w.getWorkGroup();
                if (groups != null) {
                    for (WorkGroup wGroup : groups) {
                        List<WorkSummary> summaries = wGroup.getWorkSummary();
                        if (summaries != null) {
                            for (WorkSummary s : summaries) {
                                assertNotNull(s.getSource());
                                assertEquals(Visibility.PUBLIC, s.getVisibility());
                            }
                        }
                    }
                }
            }
        }
    }
    //Check the visibility of every biography elements that exists
    if (record.getPerson() != null) {
        //Address
        if (record.getPerson().getAddresses() != null) {
            Addresses addresses = record.getPerson().getAddresses();
            List<Address> list = addresses.getAddress();
            if (list != null) {
                for (Address o : list) {
                    assertNotNull(o.getSource());
                    assertEquals(Visibility.PUBLIC, o.getVisibility());
                }
            }
        }
        //Biography
        if (record.getPerson().getBiography() != null) {
            Biography b = record.getPerson().getBiography();
            if (b != null) {
                assertNotNull(b.getVisibility());
                assertEquals(Visibility.PUBLIC, b.getVisibility());
            }
        }
        //Emails
        if (record.getPerson().getEmails() != null) {
            Emails emails = record.getPerson().getEmails();
            List<Email> list = emails.getEmails();
            if (list != null) {
                for (Email e : list) {
                    assertNotNull(e.getVisibility());
                    assertEquals(Visibility.PUBLIC, e.getVisibility());
                }
            }
        }
        //External identifiers
        if (record.getPerson().getExternalIdentifiers() != null) {
            PersonExternalIdentifiers extIds = record.getPerson().getExternalIdentifiers();
            List<PersonExternalIdentifier> list = extIds.getExternalIdentifiers();
            if (list != null) {
                for (PersonExternalIdentifier e : list) {
                    assertEquals(Visibility.PUBLIC, e.getVisibility());
                }
            }
        }
        //Keywords
        if (record.getPerson().getKeywords() != null) {
            Keywords keywords = record.getPerson().getKeywords();
            List<Keyword> list = keywords.getKeywords();
            if (list != null) {
                for (Keyword e : list) {
                    assertEquals(Visibility.PUBLIC, e.getVisibility());
                }
            }
        }
        //Name
        if (record.getPerson().getName() != null) {
            Name name = record.getPerson().getName();
            assertEquals(Visibility.PUBLIC, name.getVisibility());
        }
        //Other names
        if (record.getPerson().getOtherNames() != null) {
            OtherNames otherNames = record.getPerson().getOtherNames();
            List<OtherName> list = otherNames.getOtherNames();
            if (list != null) {
                for (OtherName e : list) {
                    assertEquals(Visibility.PUBLIC, e.getVisibility());
                }
            }
        }
        //Researcher urls
        if (record.getPerson().getResearcherUrls() != null) {
            ResearcherUrls rUrls = record.getPerson().getResearcherUrls();
            List<ResearcherUrl> list = rUrls.getResearcherUrls();
            if (list != null) {
                for (ResearcherUrl e : list) {
                    assertEquals(Visibility.PUBLIC, e.getVisibility());
                }
            }
        }
    }
}

Example 3 with WorkGroup

use of org.orcid.jaxb.model.record.summary_rc2.WorkGroup in project ORCID-Source by ORCID.

the class WorksTest method testWorksWithPartOfRelationshipDontGetGrouped.

@Test
public void testWorksWithPartOfRelationshipDontGetGrouped() throws JSONException, InterruptedException, URISyntaxException {
    long time = System.currentTimeMillis();
    String accessTokenForClient1 = getAccessToken();
    String accessTokenForClient2 = getAccessToken(getUser1OrcidId(), getUser1Password(), getScopes(ScopePathType.ACTIVITIES_UPDATE, ScopePathType.ACTIVITIES_READ_LIMITED), getClient2ClientId(), getClient2ClientSecret(), getClient2RedirectUri());
    Work work1 = (Work) unmarshallFromPath("/record_2.0_rc3/samples/work-2.0_rc3.xml", Work.class);
    work1.setPutCode(null);
    work1.setVisibility(Visibility.PUBLIC);
    work1.getExternalIdentifiers().getExternalIdentifier().clear();
    org.orcid.jaxb.model.record_rc3.WorkTitle title1 = new org.orcid.jaxb.model.record_rc3.WorkTitle();
    title1.setTitle(new Title("Work # 1" + time));
    work1.setWorkTitle(title1);
    ExternalID wExtId1 = new ExternalID();
    wExtId1.setValue("Work Id " + time);
    wExtId1.setType(WorkExternalIdentifierType.AGR.value());
    wExtId1.setRelationship(Relationship.SELF);
    wExtId1.setUrl(new Url("http://orcid.org/work#1"));
    work1.getExternalIdentifiers().getExternalIdentifier().clear();
    work1.getExternalIdentifiers().getExternalIdentifier().add(wExtId1);
    Work work2 = (Work) unmarshallFromPath("/record_2.0_rc3/samples/work-2.0_rc3.xml", Work.class);
    work2.setPutCode(null);
    work2.setVisibility(Visibility.PUBLIC);
    org.orcid.jaxb.model.record_rc3.WorkTitle title2 = new org.orcid.jaxb.model.record_rc3.WorkTitle();
    title2.setTitle(new Title("Work # 2" + time));
    work2.setWorkTitle(title2);
    work2.getExternalIdentifiers().getExternalIdentifier().clear();
    ExternalID wExtId2 = new ExternalID();
    wExtId2.setValue("Work Id " + time);
    wExtId2.setType(WorkExternalIdentifierType.AGR.value());
    wExtId2.setRelationship(Relationship.PART_OF);
    wExtId2.setUrl(new Url("http://orcid.org/work#2"));
    work2.getExternalIdentifiers().getExternalIdentifier().clear();
    work2.getExternalIdentifiers().getExternalIdentifier().add(wExtId2);
    Work work3 = (Work) unmarshallFromPath("/record_2.0_rc3/samples/work-2.0_rc3.xml", Work.class);
    work3.setPutCode(null);
    work3.setVisibility(Visibility.PUBLIC);
    org.orcid.jaxb.model.record_rc3.WorkTitle title3 = new org.orcid.jaxb.model.record_rc3.WorkTitle();
    title3.setTitle(new Title("Work # 3" + time));
    work3.setWorkTitle(title3);
    work3.getExternalIdentifiers().getExternalIdentifier().clear();
    ExternalID wExtId3 = new ExternalID();
    wExtId3.setValue("Work Id " + time);
    wExtId3.setType(WorkExternalIdentifierType.AGR.value());
    wExtId3.setRelationship(Relationship.SELF);
    wExtId3.setUrl(new Url("http://orcid.org/work#3"));
    work3.getExternalIdentifiers().getExternalIdentifier().clear();
    work3.getExternalIdentifiers().getExternalIdentifier().add(wExtId3);
    //Add the three works
    ClientResponse postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work1, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    Long putCode1 = getPutCodeFromResponse(postResponse);
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work2, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    Long putCode2 = getPutCodeFromResponse(postResponse);
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work3, accessTokenForClient2);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    Long putCode3 = getPutCodeFromResponse(postResponse);
    ClientResponse activitiesResponse = memberV2ApiClient.viewActivities(this.getUser1OrcidId(), accessTokenForClient1);
    assertEquals(Response.Status.OK.getStatusCode(), activitiesResponse.getStatus());
    ActivitiesSummary activities = activitiesResponse.getEntity(ActivitiesSummary.class);
    assertNotNull(activities);
    assertFalse(activities.getWorks().getWorkGroup().isEmpty());
    WorkGroup work1Group = null;
    WorkGroup work2Group = null;
    WorkGroup work3Group = null;
    boolean work1found = false;
    boolean work2found = false;
    boolean work3found = false;
    for (WorkGroup group : activities.getWorks().getWorkGroup()) {
        if (group.getIdentifiers().getExternalIdentifier() == null || group.getIdentifiers().getExternalIdentifier().isEmpty()) {
            for (WorkSummary summary : group.getWorkSummary()) {
                String title = summary.getTitle().getTitle().getContent();
                if (("Work # 2" + time).equals(title)) {
                    work2found = true;
                    work2Group = group;
                }
            }
        } else {
            for (ExternalID id : group.getIdentifiers().getExternalIdentifier()) {
                //If it is the ID is the one we are looking for
                if (id.getValue().equals("Work Id " + time)) {
                    for (WorkSummary summary : group.getWorkSummary()) {
                        String title = summary.getTitle().getTitle().getContent();
                        if (("Work # 1" + time).equals(title)) {
                            work1found = true;
                            work1Group = group;
                        } else if (("Work # 3" + time).equals(title)) {
                            work3found = true;
                            work3Group = group;
                        }
                    }
                }
            }
        }
    }
    assertTrue(work1found);
    assertTrue(work2found);
    assertTrue(work3found);
    //Check that work # 1 and Work # 3 are in the same work
    assertEquals(work1Group, work3Group);
    //Check that work # 2 is not in the same group than group # 1
    assertThat(work2Group, not(work1Group));
    //Remove all created works
    ClientResponse deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode1, accessTokenForClient1);
    assertNotNull(deleteResponse);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
    deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode2, accessTokenForClient1);
    assertNotNull(deleteResponse);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
    deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode3, accessTokenForClient2);
    assertNotNull(deleteResponse);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
}

Example 4 with WorkGroup

use of org.orcid.jaxb.model.record.summary_rc2.WorkGroup in project ORCID-Source by ORCID.

the class OrcidRecordToSolrDocument method convert.

public OrcidSolrDocument convert(Record record, List<Funding> fundings) {
    OrcidSolrDocument profileIndexDocument = new OrcidSolrDocument();
    profileIndexDocument.setOrcid(record.getOrcidIdentifier().getPath());
    if (record.getHistory() != null) {
        if (record.getHistory().getLastModifiedDate() != null) {
            profileIndexDocument.setProfileLastModifiedDate(record.getHistory().getLastModifiedDate().getValue().toGregorianCalendar().getTime());
        }
        if (record.getHistory().getSubmissionDate() != null) {
            profileIndexDocument.setProfileSubmissionDate(record.getHistory().getSubmissionDate().getValue().toGregorianCalendar().getTime());
        }
    }
    if (record.getDeprecated() != null) {
        profileIndexDocument.setPrimaryRecord(record.getDeprecated().getPrimaryRecord() != null ? record.getDeprecated().getPrimaryRecord().getOrcidIdentifier().getPath() : null);
    }
    if (record.getPerson() != null) {
        if (record.getPerson().getName() != null) {
            profileIndexDocument.setFamilyName(record.getPerson().getName().getFamilyName() != null ? record.getPerson().getName().getFamilyName().getContent() : null);
            profileIndexDocument.setGivenNames(record.getPerson().getName().getGivenNames() != null ? record.getPerson().getName().getGivenNames().getContent() : null);
            profileIndexDocument.setCreditName(record.getPerson().getName().getCreditName() != null ? record.getPerson().getName().getCreditName().getContent() : null);
        }
        if (record.getPerson().getOtherNames() != null) {
            if (record.getPerson().getOtherNames().getOtherNames() != null && !record.getPerson().getOtherNames().getOtherNames().isEmpty()) {
                List<String> names = new ArrayList<String>();
                for (org.orcid.jaxb.model.record_v2.OtherName on : record.getPerson().getOtherNames().getOtherNames()) {
                    names.add(on.getContent());
                }
                profileIndexDocument.setOtherNames(names);
            }
        }
        if (record.getPerson().getEmails() != null && record.getPerson().getEmails().getEmails() != null) {
            for (org.orcid.jaxb.model.record_v2.Email e : record.getPerson().getEmails().getEmails()) {
                profileIndexDocument.addEmailAddress(e.getEmail());
            }
        }
        //weird, the type is not indexed...!
        if (record.getPerson().getExternalIdentifiers() != null && record.getPerson().getExternalIdentifiers().getExternalIdentifiers() != null) {
            List<String> extIdOrcids = new ArrayList<String>();
            List<String> extIdRefs = new ArrayList<String>();
            List<String> extIdOrcidsAndRefs = new ArrayList<String>();
            for (PersonExternalIdentifier externalIdentifier : record.getPerson().getExternalIdentifiers().getExternalIdentifiers()) {
                String sourcePath = null;
                if (externalIdentifier.getSource() != null && externalIdentifier.getSource().retrieveSourcePath() != null) {
                    sourcePath = externalIdentifier.getSource().retrieveSourcePath();
                    extIdOrcids.add(sourcePath);
                }
                if (externalIdentifier.getValue() != null) {
                    //weird, the type is not indexed...!
                    extIdRefs.add(externalIdentifier.getValue());
                }
                if (NullUtils.noneNull(sourcePath, externalIdentifier.getValue())) {
                    extIdOrcidsAndRefs.add(sourcePath + "=" + externalIdentifier.getValue());
                }
            }
            if (!extIdOrcids.isEmpty()) {
                profileIndexDocument.setExternalIdSources(extIdOrcids);
            }
            if (!extIdRefs.isEmpty()) {
                profileIndexDocument.setExternalIdReferences(extIdRefs);
            }
            if (!extIdOrcidsAndRefs.isEmpty()) {
                profileIndexDocument.setExternalIdSourcesAndReferences(extIdOrcidsAndRefs);
            }
        }
        //weird, we only index keywords if activities exist...!
        if (record.getActivitiesSummary() != null) {
            if (record.getPerson().getKeywords() != null && record.getPerson().getKeywords().getKeywords() != null) {
                List<String> keywordValues = new ArrayList<String>();
                for (org.orcid.jaxb.model.record_v2.Keyword keyword : record.getPerson().getKeywords().getKeywords()) {
                    keywordValues.add(keyword.getContent());
                }
                profileIndexDocument.setKeywords(keywordValues);
            }
        }
        if (record.getActivitiesSummary() != null && record.getActivitiesSummary().getWorks() != null && record.getActivitiesSummary().getWorks().getWorkGroup() != null) {
            //work ids
            Map<String, List<String>> allExternalIdentifiers = new HashMap<String, List<String>>();
            Map<String, List<String>> partOf = new HashMap<String, List<String>>();
            Map<String, List<String>> self = new HashMap<String, List<String>>();
            Set<String> workTitles = new HashSet<String>();
            for (WorkGroup wg : record.getActivitiesSummary().getWorks().getWorkGroup()) {
                if (wg.getWorkSummary() != null) {
                    for (WorkSummary w : wg.getWorkSummary()) {
                        // have to use summaries here as group does not include part-of
                        if (w.getExternalIdentifiers() != null && w.getExternalIdentifiers().getExternalIdentifier() != null) {
                            for (ExternalID id : w.getExternalIdentifiers().getExternalIdentifier()) {
                                //old way
                                if (!allExternalIdentifiers.containsKey(id.getType())) {
                                    allExternalIdentifiers.put(id.getType(), new ArrayList<String>());
                                }
                                if (!allExternalIdentifiers.get(id.getType()).contains(id.getValue())) {
                                    allExternalIdentifiers.get(id.getType()).add(id.getValue());
                                }
                                //new way
                                if (Relationship.SELF.equals(id.getRelationship())) {
                                    if (!self.containsKey(id.getType() + SolrConstants.DYNAMIC_SELF)) {
                                        self.put(id.getType() + SolrConstants.DYNAMIC_SELF, new ArrayList<String>());
                                    }
                                    if (!self.get(id.getType() + SolrConstants.DYNAMIC_SELF).contains(id.getValue())) {
                                        self.get(id.getType() + SolrConstants.DYNAMIC_SELF).add(id.getValue());
                                    }
                                }
                                if (Relationship.PART_OF.equals(id.getRelationship())) {
                                    if (!partOf.containsKey(id.getType() + SolrConstants.DYNAMIC_PART_OF)) {
                                        partOf.put(id.getType() + SolrConstants.DYNAMIC_PART_OF, new ArrayList<String>());
                                    }
                                    if (!partOf.get(id.getType() + SolrConstants.DYNAMIC_PART_OF).contains(id.getValue())) {
                                        partOf.get(id.getType() + SolrConstants.DYNAMIC_PART_OF).add(id.getValue());
                                    }
                                }
                            }
                        }
                        if (w.getTitle() != null) {
                            if (w.getTitle().getTitle() != null && StringUtils.isNotEmpty(w.getTitle().getTitle().getContent())) {
                                workTitles.add(w.getTitle().getTitle().getContent());
                            }
                            if (w.getTitle().getSubtitle() != null && StringUtils.isNotEmpty(w.getTitle().getSubtitle().getContent())) {
                                workTitles.add(w.getTitle().getSubtitle().getContent());
                            }
                            if (w.getTitle().getTranslatedTitle() != null && StringUtils.isNotEmpty(w.getTitle().getTranslatedTitle().getContent())) {
                                workTitles.add(w.getTitle().getTranslatedTitle().getContent());
                            }
                        }
                    }
                }
            }
            profileIndexDocument.setSelfIds(self);
            profileIndexDocument.setPartOfIds(partOf);
            //now add them to the doc, the old way
            addExternalIdentifiersToIndexDocument(profileIndexDocument, allExternalIdentifiers);
            profileIndexDocument.setWorkTitles(new ArrayList<String>(workTitles));
        }
        Map<String, List<String>> organisationIds = new HashMap<String, List<String>>();
        organisationIds.put(SolrConstants.FUNDREF_ORGANISATION_ID, new ArrayList<String>());
        organisationIds.put(SolrConstants.RINGGOLD_ORGANISATION_ID, new ArrayList<String>());
        Map<String, List<String>> organisationNames = new HashMap<String, List<String>>();
        organisationNames.put(SolrConstants.AFFILIATION_ORGANISATION_NAME, new ArrayList<String>());
        organisationNames.put(SolrConstants.FUNDING_ORGANISATION_NAME, new ArrayList<String>());
        if (!fundings.isEmpty()) {
            Set<String> fundingTitle = new HashSet<String>();
            Set<String> fundingGrantNumbers = new HashSet<String>();
            for (Funding f : fundings) {
                if (f.getTitle() != null) {
                    if (f.getTitle().getTitle() != null && StringUtils.isNotEmpty(f.getTitle().getTitle().getContent())) {
                        fundingTitle.add(f.getTitle().getTitle().getContent());
                    }
                    if (f.getTitle().getTranslatedTitle() != null && StringUtils.isNotEmpty(f.getTitle().getTranslatedTitle().getContent())) {
                        fundingTitle.add(f.getTitle().getTranslatedTitle().getContent());
                    }
                }
                if (f.getExternalIdentifiers() != null && f.getExternalIdentifiers().getExternalIdentifier() != null) {
                    for (ExternalID id : f.getExternalIdentifiers().getExternalIdentifier()) {
                        if (id.getType().equals("grant_number")) {
                            fundingGrantNumbers.add(id.getValue());
                        }
                    }
                }
                if (f.getOrganization() != null) {
                    organisationNames.get(SolrConstants.FUNDING_ORGANISATION_NAME).add(f.getOrganization().getName());
                    if (f.getOrganization().getDisambiguatedOrganization() != null)
                        organisationIds.get(SolrConstants.FUNDREF_ORGANISATION_ID).add(f.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier());
                }
            }
            profileIndexDocument.setFundingTitles(new ArrayList<String>(fundingTitle));
            profileIndexDocument.setGrantNumbers(new ArrayList<String>(fundingGrantNumbers));
        }
        //now do affiliations
        if (record.getActivitiesSummary() != null && record.getActivitiesSummary().getEducations() != null && record.getActivitiesSummary().getEducations().getSummaries() != null) {
            for (EducationSummary e : record.getActivitiesSummary().getEducations().getSummaries()) {
                if (e.getOrganization() != null) {
                    organisationNames.get(SolrConstants.AFFILIATION_ORGANISATION_NAME).add(e.getOrganization().getName());
                    if (e.getOrganization().getDisambiguatedOrganization() != null)
                        organisationIds.get(SolrConstants.RINGGOLD_ORGANISATION_ID).add(e.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier());
                }
            }
        }
        if (record.getActivitiesSummary() != null && record.getActivitiesSummary().getEmployments() != null && record.getActivitiesSummary().getEmployments().getSummaries() != null) {
            for (EmploymentSummary e : record.getActivitiesSummary().getEmployments().getSummaries()) {
                if (e.getOrganization() != null) {
                    organisationNames.get(SolrConstants.AFFILIATION_ORGANISATION_NAME).add(e.getOrganization().getName());
                    if (e.getOrganization().getDisambiguatedOrganization() != null)
                        organisationIds.get(SolrConstants.RINGGOLD_ORGANISATION_ID).add(e.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier());
                }
            }
        }
        profileIndexDocument.setOrganisationIds(organisationIds);
        profileIndexDocument.setOrganisationNames(organisationNames);
    }
    if (indexProfile) {
        try {
            StringWriter sw = new StringWriter();
            jaxbContext_2_0_api.createMarshaller().marshal(record, sw);
            profileIndexDocument.setPublicProfileMessage(sw.getBuffer().toString());
        } catch (JAXBException e) {
            LOG.error("problem marshalling xml", e);
        }
    }
    LOG.debug(profileIndexDocument.toString());
    return profileIndexDocument;
}

Example 5 with WorkGroup

use of org.orcid.jaxb.model.record.summary_rc2.WorkGroup in project ORCID-Source by ORCID.

the class ValidateV2SamplesTest method testUnmarshallWorks.

@Test
public void testUnmarshallWorks() throws JAXBException, SAXException, URISyntaxException {
    Works works = (Works) unmarshallFromPath("/record_2.0/samples/read_samples/works-2.0.xml", Works.class, "/record_2.0/activities-2.0.xsd");
    assertNotNull(works);
    assertNotNull(works.getLastModifiedDate());
    assertNotNull(works.getLastModifiedDate().getValue());
    assertEquals(3, works.getWorkGroup().size());
    boolean foundWorkWithNoExtIds = false;
    for (WorkGroup group : works.getWorkGroup()) {
        assertNotNull(group.getLastModifiedDate().getValue());
        assertNotNull(group.getIdentifiers().getExternalIdentifier());
        if (group.getIdentifiers().getExternalIdentifier().isEmpty()) {
            WorkSummary summary = group.getWorkSummary().get(0);
            assertEquals("1", summary.getDisplayIndex());
            assertEquals(1, summary.getExternalIdentifiers().getExternalIdentifier().size());
            assertEquals("doi", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getType());
            assertEquals("https://doi.org/123456", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getUrl().getValue());
            assertEquals("123456", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
            assertEquals("/8888-8888-8888-8880/work/3356", summary.getPath());
            assertEquals("03", summary.getPublicationDate().getDay().getValue());
            assertEquals("03", summary.getPublicationDate().getMonth().getValue());
            assertEquals("2017", summary.getPublicationDate().getYear().getValue());
            assertEquals("Work # 0", summary.getTitle().getTitle().getContent());
            assertEquals(WorkType.CONFERENCE_PAPER, summary.getType());
            assertEquals(Visibility.PUBLIC, summary.getVisibility());
            foundWorkWithNoExtIds = true;
        } else {
            assertEquals(1, group.getIdentifiers().getExternalIdentifier().size());
            ExternalID extId = group.getIdentifiers().getExternalIdentifier().get(0);
            if (extId.getType().equals("arxiv")) {
                assertEquals(Relationship.SELF, extId.getRelationship());
                assertEquals("http://arxiv.org/abs/123456", extId.getUrl().getValue());
                assertEquals("123456", extId.getValue());
            } else if (extId.getType().equals("bibcode")) {
                assertEquals(Relationship.SELF, extId.getRelationship());
                assertEquals("http://adsabs.harvard.edu/abs/4567", extId.getUrl().getValue());
                assertEquals("4567", extId.getValue());
            } else {
                fail("Invalid ext id type " + extId.getType());
            }
            assertEquals(1, group.getWorkSummary().size());
            WorkSummary summary = group.getWorkSummary().get(0);
            if (summary.getPutCode().equals(Long.valueOf(3357))) {
                assertEquals("1", summary.getDisplayIndex());
                assertEquals(1, summary.getExternalIdentifiers().getExternalIdentifier().size());
                assertEquals("arxiv", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getType());
                assertEquals("http://arxiv.org/abs/123456", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getUrl().getValue());
                assertEquals("123456", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
                assertEquals("/8888-8888-8888-8880/work/3357", summary.getPath());
                assertEquals("02", summary.getPublicationDate().getDay().getValue());
                assertEquals("02", summary.getPublicationDate().getMonth().getValue());
                assertEquals("2017", summary.getPublicationDate().getYear().getValue());
                assertEquals("Work # 1", summary.getTitle().getTitle().getContent());
                assertEquals(WorkType.CONFERENCE_PAPER, summary.getType());
                assertEquals(Visibility.PUBLIC, summary.getVisibility());
            } else if (summary.getPutCode().equals(Long.valueOf(3358))) {
                assertEquals("1", summary.getDisplayIndex());
                assertEquals(1, summary.getExternalIdentifiers().getExternalIdentifier().size());
                assertEquals("bibcode", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getType());
                assertEquals("http://adsabs.harvard.edu/abs/4567", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getUrl().getValue());
                assertEquals("4567", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
                assertEquals("/8888-8888-8888-8880/work/3358", summary.getPath());
                assertEquals("03", summary.getPublicationDate().getDay().getValue());
                assertEquals("03", summary.getPublicationDate().getMonth().getValue());
                assertEquals("2017", summary.getPublicationDate().getYear().getValue());
                assertEquals("Work # 2", summary.getTitle().getTitle().getContent());
                assertEquals(WorkType.JOURNAL_ARTICLE, summary.getType());
                assertEquals(Visibility.PUBLIC, summary.getVisibility());
            } else {
                fail("Invalid put code " + summary.getPutCode());
            }
        }
    }
    assertTrue(foundWorkWithNoExtIds);
}