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Example 1 with PeerReview

use of org.orcid.jaxb.model.record_rc2.PeerReview in project ORCID-Source by ORCID.

the class OrcidInfo method publicPreview.

@RequestMapping(value = { "/{orcid:(?:\\d{4}-){3,}\\d{3}[\\dX]}", "/{orcid:(?:\\d{4}-){3,}\\d{3}[\\dX]}/print" })
public ModelAndView publicPreview(HttpServletRequest request, @RequestParam(value = "page", defaultValue = "1") int pageNo, @RequestParam(value = "v", defaultValue = "0") int v, @RequestParam(value = "maxResults", defaultValue = "15") int maxResults, @PathVariable("orcid") String orcid) {
    ProfileEntity profile = null;
    try {
        profile = profileEntityCacheManager.retrieve(orcid);
    } catch (Exception e) {
        return new ModelAndView("error-404");
    }
    try {
        // Check if the profile is deprecated, non claimed or locked
        orcidSecurityManager.checkProfile(orcid);
    } catch (OrcidDeprecatedException | OrcidNotClaimedException | LockedException e) {
        ModelAndView mav = new ModelAndView("public_profile_unavailable");
        mav.addObject("effectiveUserOrcid", orcid);
        String displayName = "";
        if (e instanceof OrcidDeprecatedException) {
            PersonalDetails publicPersonalDetails = personalDetailsManager.getPublicPersonalDetails(orcid);
            if (publicPersonalDetails.getName() != null) {
                Name name = publicPersonalDetails.getName();
                if (name.getVisibility().equals(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC)) {
                    if (name.getCreditName() != null && !PojoUtil.isEmpty(name.getCreditName().getContent())) {
                        displayName = name.getCreditName().getContent();
                    } else {
                        if (name.getGivenNames() != null && !PojoUtil.isEmpty(name.getGivenNames().getContent())) {
                            displayName = name.getGivenNames().getContent() + " ";
                        }
                        if (name.getFamilyName() != null && !PojoUtil.isEmpty(name.getFamilyName().getContent())) {
                            displayName += name.getFamilyName().getContent();
                        }
                    }
                }
            }
            mav.addObject("deprecated", true);
            mav.addObject("primaryRecord", profile.getPrimaryRecord().getId());
        } else if (e instanceof OrcidNotClaimedException) {
            displayName = localeManager.resolveMessage("orcid.reserved_for_claim");
        } else {
            mav.addObject("locked", true);
            mav.addObject("isPublicProfile", true);
            displayName = localeManager.resolveMessage("public_profile.deactivated.given_names") + " " + localeManager.resolveMessage("public_profile.deactivated.family_name");
        }
        if (!PojoUtil.isEmpty(displayName)) {
            mav.addObject("title", getMessage("layout.public-layout.title", displayName, orcid));
            mav.addObject("displayName", displayName);
        }
        return mav;
    }
    long lastModifiedTime = getLastModifiedTime(orcid);
    ModelAndView mav = null;
    if (request.getRequestURI().contains("/print")) {
        mav = new ModelAndView("print_public_record");
        mav.addObject("hideUserVoiceScript", true);
    } else {
        mav = new ModelAndView("public_profile_v3");
    }
    mav.addObject("isPublicProfile", true);
    mav.addObject("effectiveUserOrcid", orcid);
    mav.addObject("lastModifiedTime", lastModifiedTime);
    boolean isProfileEmtpy = true;
    HttpSession session = request.getSession(false);
    if (session != null) {
        session.removeAttribute(PUBLIC_WORKS_RESULTS_ATTRIBUTE);
    }
    PersonalDetails publicPersonalDetails = personalDetailsManager.getPublicPersonalDetails(orcid);
    // Fill personal details
    if (publicPersonalDetails != null) {
        // Get display name
        String displayName = "";
        if (publicPersonalDetails.getName() != null) {
            Name name = publicPersonalDetails.getName();
            if (name.getVisibility().equals(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC)) {
                if (name.getCreditName() != null && !PojoUtil.isEmpty(name.getCreditName().getContent())) {
                    displayName = name.getCreditName().getContent();
                } else {
                    if (name.getGivenNames() != null && !PojoUtil.isEmpty(name.getGivenNames().getContent())) {
                        displayName = name.getGivenNames().getContent() + " ";
                    }
                    if (name.getFamilyName() != null && !PojoUtil.isEmpty(name.getFamilyName().getContent())) {
                        displayName += name.getFamilyName().getContent();
                    }
                }
            }
        }
        if (!PojoUtil.isEmpty(displayName)) {
            // <Published Name> (<ORCID iD>) - ORCID | Connecting Research
            // and Researchers
            mav.addObject("title", getMessage("layout.public-layout.title", displayName.trim(), orcid));
            mav.addObject("displayName", displayName);
        }
        // Get biography
        if (publicPersonalDetails.getBiography() != null) {
            Biography bio = publicPersonalDetails.getBiography();
            if (org.orcid.jaxb.model.common_v2.Visibility.PUBLIC.equals(bio.getVisibility()) && !PojoUtil.isEmpty(bio.getContent())) {
                isProfileEmtpy = false;
                mav.addObject("biography", bio);
            }
        }
        // Fill other names
        OtherNames publicOtherNames = publicPersonalDetails.getOtherNames();
        if (publicOtherNames != null && publicOtherNames.getOtherNames() != null) {
            Iterator<OtherName> it = publicOtherNames.getOtherNames().iterator();
            while (it.hasNext()) {
                OtherName otherName = it.next();
                if (!org.orcid.jaxb.model.common_v2.Visibility.PUBLIC.equals(otherName.getVisibility())) {
                    it.remove();
                }
            }
        }
        Map<String, List<OtherName>> groupedOtherNames = groupOtherNames(publicOtherNames);
        mav.addObject("publicGroupedOtherNames", groupedOtherNames);
    }
    // Fill biography elements
    // Fill country
    Addresses publicAddresses = addressManager.getPublicAddresses(orcid, lastModifiedTime);
    Map<String, String> countryNames = new HashMap<String, String>();
    if (publicAddresses != null && publicAddresses.getAddress() != null) {
        Address publicAddress = null;
        // The primary address will be the one with the lowest display index
        for (Address address : publicAddresses.getAddress()) {
            countryNames.put(address.getCountry().getValue().value(), getcountryName(address.getCountry().getValue().value()));
            if (publicAddress == null) {
                publicAddress = address;
            }
        }
        if (publicAddress != null) {
            mav.addObject("publicAddress", publicAddress);
            mav.addObject("countryNames", countryNames);
            Map<String, List<Address>> groupedAddresses = groupAddresses(publicAddresses);
            mav.addObject("publicGroupedAddresses", groupedAddresses);
        }
    }
    // Fill keywords
    Keywords publicKeywords = keywordManager.getPublicKeywords(orcid, lastModifiedTime);
    Map<String, List<Keyword>> groupedKeywords = groupKeywords(publicKeywords);
    mav.addObject("publicGroupedKeywords", groupedKeywords);
    // Fill researcher urls
    ResearcherUrls publicResearcherUrls = researcherUrlManager.getPublicResearcherUrls(orcid, lastModifiedTime);
    Map<String, List<ResearcherUrl>> groupedResearcherUrls = groupResearcherUrls(publicResearcherUrls);
    mav.addObject("publicGroupedResearcherUrls", groupedResearcherUrls);
    // Fill emails
    Emails publicEmails = emailManager.getPublicEmails(orcid, lastModifiedTime);
    Map<String, List<Email>> groupedEmails = groupEmails(publicEmails);
    mav.addObject("publicGroupedEmails", groupedEmails);
    // Fill external identifiers
    PersonExternalIdentifiers publicPersonExternalIdentifiers = externalIdentifierManager.getPublicExternalIdentifiers(orcid, lastModifiedTime);
    Map<String, List<PersonExternalIdentifier>> groupedExternalIdentifiers = groupExternalIdentifiers(publicPersonExternalIdentifiers);
    mav.addObject("publicGroupedPersonExternalIdentifiers", groupedExternalIdentifiers);
    LinkedHashMap<Long, WorkForm> minimizedWorksMap = new LinkedHashMap<>();
    LinkedHashMap<Long, Affiliation> affiliationMap = new LinkedHashMap<>();
    LinkedHashMap<Long, Funding> fundingMap = new LinkedHashMap<>();
    LinkedHashMap<Long, PeerReview> peerReviewMap = new LinkedHashMap<>();
    minimizedWorksMap = activityCacheManager.pubMinWorksMap(orcid, lastModifiedTime);
    if (minimizedWorksMap.size() > 0) {
        isProfileEmtpy = false;
    } else {
        mav.addObject("worksEmpty", true);
    }
    affiliationMap = affiliationMap(orcid, lastModifiedTime);
    if (affiliationMap.size() > 0) {
        isProfileEmtpy = false;
    } else {
        mav.addObject("affiliationsEmpty", true);
    }
    fundingMap = fundingMap(orcid, lastModifiedTime);
    if (fundingMap.size() > 0)
        isProfileEmtpy = false;
    else {
        mav.addObject("fundingEmpty", true);
    }
    peerReviewMap = peerReviewMap(orcid, lastModifiedTime);
    if (peerReviewMap.size() > 0) {
        isProfileEmtpy = false;
    } else {
        mav.addObject("peerReviewsEmpty", true);
    }
    ObjectMapper mapper = new ObjectMapper();
    try {
        String worksIdsJson = mapper.writeValueAsString(minimizedWorksMap.keySet());
        String affiliationIdsJson = mapper.writeValueAsString(affiliationMap.keySet());
        String fundingIdsJson = mapper.writeValueAsString(fundingMap.keySet());
        String peerReviewIdsJson = mapper.writeValueAsString(peerReviewMap.keySet());
        mav.addObject("workIdsJson", StringEscapeUtils.escapeEcmaScript(worksIdsJson));
        mav.addObject("affiliationIdsJson", StringEscapeUtils.escapeEcmaScript(affiliationIdsJson));
        mav.addObject("fundingIdsJson", StringEscapeUtils.escapeEcmaScript(fundingIdsJson));
        mav.addObject("peerReviewIdsJson", StringEscapeUtils.escapeEcmaScript(peerReviewIdsJson));
        mav.addObject("isProfileEmpty", isProfileEmtpy);
    } catch (JsonGenerationException e) {
        e.printStackTrace();
    } catch (JsonMappingException e) {
        e.printStackTrace();
    } catch (IOException e) {
        e.printStackTrace();
    }
    if (!profile.isReviewed()) {
        if (isProfileValidForIndex(profile)) {
            int countTokens = orcidOauth2TokenService.findCountByUserName(orcid, lastModifiedTime);
            if (!profile.isAccountNonLocked() || countTokens == 0 || (!CreationMethod.WEBSITE.value().equals(profile.getCreationMethod()) && !CreationMethod.DIRECT.value().equals(profile.getCreationMethod()))) {
                mav.addObject("noIndex", true);
            }
        } else {
            mav.addObject("noIndex", true);
        }
    }
    return mav;
}
Also used : Keywords(org.orcid.jaxb.model.record_v2.Keywords) Address(org.orcid.jaxb.model.record_v2.Address) OtherNames(org.orcid.jaxb.model.record_v2.OtherNames) HashMap(java.util.HashMap) LinkedHashMap(java.util.LinkedHashMap) Funding(org.orcid.jaxb.model.record_v2.Funding) ModelAndView(org.springframework.web.servlet.ModelAndView) OtherName(org.orcid.jaxb.model.record_v2.OtherName) Name(org.orcid.jaxb.model.record_v2.Name) LinkedHashMap(java.util.LinkedHashMap) Addresses(org.orcid.jaxb.model.record_v2.Addresses) JsonMappingException(com.fasterxml.jackson.databind.JsonMappingException) Biography(org.orcid.jaxb.model.record_v2.Biography) ResearcherUrls(org.orcid.jaxb.model.record_v2.ResearcherUrls) List(java.util.List) ArrayList(java.util.ArrayList) Emails(org.orcid.jaxb.model.record_v2.Emails) ObjectMapper(com.fasterxml.jackson.databind.ObjectMapper) Affiliation(org.orcid.jaxb.model.record_v2.Affiliation) LockedException(org.orcid.core.security.aop.LockedException) HttpSession(javax.servlet.http.HttpSession) OtherName(org.orcid.jaxb.model.record_v2.OtherName) IOException(java.io.IOException) PersonalDetails(org.orcid.jaxb.model.record_v2.PersonalDetails) ProfileEntity(org.orcid.persistence.jpa.entities.ProfileEntity) OrcidNotClaimedException(org.orcid.core.exception.OrcidNotClaimedException) OrcidDeprecatedException(org.orcid.core.exception.OrcidDeprecatedException) LockedException(org.orcid.core.security.aop.LockedException) JsonMappingException(com.fasterxml.jackson.databind.JsonMappingException) UnsupportedEncodingException(java.io.UnsupportedEncodingException) JsonGenerationException(com.fasterxml.jackson.core.JsonGenerationException) IOException(java.io.IOException) WorkForm(org.orcid.pojo.ajaxForm.WorkForm) PersonExternalIdentifiers(org.orcid.jaxb.model.record_v2.PersonExternalIdentifiers) OrcidDeprecatedException(org.orcid.core.exception.OrcidDeprecatedException) OrcidNotClaimedException(org.orcid.core.exception.OrcidNotClaimedException) JsonGenerationException(com.fasterxml.jackson.core.JsonGenerationException) PeerReview(org.orcid.jaxb.model.record_v2.PeerReview) RequestMapping(org.springframework.web.bind.annotation.RequestMapping)

Example 2 with PeerReview

use of org.orcid.jaxb.model.record_rc2.PeerReview in project ORCID-Source by ORCID.

the class MemberV2ApiServiceDelegatorImpl method viewPeerReview.

@Override
public Response viewPeerReview(String orcid, Long putCode) {
    PeerReview p = peerReviewManagerReadOnly.getPeerReview(orcid, putCode);
    orcidSecurityManager.checkAndFilter(orcid, p, ScopePathType.PEER_REVIEW_READ_LIMITED);
    ActivityUtils.setPathToActivity(p, orcid);
    sourceUtils.setSourceName(p);
    return Response.ok(p).build();
}
Also used : PeerReview(org.orcid.jaxb.model.record_v2.PeerReview)

Example 3 with PeerReview

use of org.orcid.jaxb.model.record_rc2.PeerReview in project ORCID-Source by ORCID.

the class MemberV2ApiServiceDelegatorImpl method updatePeerReview.

@Override
public Response updatePeerReview(String orcid, Long putCode, PeerReview peerReview) {
    orcidSecurityManager.checkClientAccessAndScopes(orcid, ScopePathType.PEER_REVIEW_UPDATE);
    if (!putCode.equals(peerReview.getPutCode())) {
        Map<String, String> params = new HashMap<String, String>();
        params.put("urlPutCode", String.valueOf(putCode));
        params.put("bodyPutCode", String.valueOf(peerReview.getPutCode()));
        throw new MismatchedPutCodeException(params);
    }
    clearSource(peerReview);
    PeerReview updatedPeerReview = peerReviewManager.updatePeerReview(orcid, peerReview, true);
    sourceUtils.setSourceName(updatedPeerReview);
    return Response.ok(updatedPeerReview).build();
}
Also used : HashMap(java.util.HashMap) PeerReview(org.orcid.jaxb.model.record_v2.PeerReview) MismatchedPutCodeException(org.orcid.core.exception.MismatchedPutCodeException)

Example 4 with PeerReview

use of org.orcid.jaxb.model.record_rc2.PeerReview in project ORCID-Source by ORCID.

the class Utils method getPeerReview.

public static PeerReview getPeerReview() {
    PeerReview peerReview = new PeerReview();
    ExternalIDs weis = new ExternalIDs();
    ExternalID wei1 = new ExternalID();
    wei1.setRelationship(Relationship.PART_OF);
    wei1.setUrl(new Url("http://myUrl.com"));
    wei1.setValue("work-external-identifier-id");
    wei1.setType(WorkExternalIdentifierType.DOI.value());
    weis.getExternalIdentifier().add(wei1);
    peerReview.setExternalIdentifiers(weis);
    peerReview.setGroupId("issn:0000003");
    peerReview.setOrganization(getOrganization());
    peerReview.setRole(Role.CHAIR);
    peerReview.setSubjectContainerName(new Title("subject-container-name"));
    peerReview.setSubjectExternalIdentifier(wei1);
    WorkTitle workTitle = new WorkTitle();
    workTitle.setTitle(new Title("work-title"));
    peerReview.setSubjectName(workTitle);
    peerReview.setSubjectType(WorkType.DATA_SET);
    peerReview.setType(PeerReviewType.EVALUATION);
    return peerReview;
}
Also used : ExternalIDs(org.orcid.jaxb.model.record_v2.ExternalIDs) WorkTitle(org.orcid.jaxb.model.record_v2.WorkTitle) ExternalID(org.orcid.jaxb.model.record_v2.ExternalID) WorkTitle(org.orcid.jaxb.model.record_v2.WorkTitle) FundingTitle(org.orcid.jaxb.model.record_v2.FundingTitle) Title(org.orcid.jaxb.model.common_v2.Title) PeerReview(org.orcid.jaxb.model.record_v2.PeerReview) Url(org.orcid.jaxb.model.common_v2.Url) ResearcherUrl(org.orcid.jaxb.model.record_v2.ResearcherUrl)

Example 5 with PeerReview

use of org.orcid.jaxb.model.record_rc2.PeerReview in project ORCID-Source by ORCID.

the class ActivityValidator method validatePeerReview.

public void validatePeerReview(PeerReview peerReview, SourceEntity sourceEntity, boolean createFlag, boolean isApiRequest, Visibility originalVisibility) {
    if (peerReview.getExternalIdentifiers() == null || peerReview.getExternalIdentifiers().getExternalIdentifier().isEmpty()) {
        throw new ActivityIdentifierValidationException();
    }
    if (peerReview.getPutCode() != null && createFlag) {
        Map<String, String> params = new HashMap<String, String>();
        params.put("clientName", sourceEntity.getSourceName());
        throw new InvalidPutCodeException(params);
    }
    if (peerReview.getType() == null) {
        Map<String, String> params = new HashMap<String, String>();
        String peerReviewTypes = Arrays.stream(PeerReviewType.values()).map(element -> element.value()).collect(Collectors.joining(", "));
        params.put("type", "peer review type");
        params.put("values", peerReviewTypes);
        throw new ActivityTypeValidationException();
    }
    externalIDValidator.validateWorkOrPeerReview(peerReview.getExternalIdentifiers());
    if (peerReview.getSubjectExternalIdentifier() != null) {
        externalIDValidator.validateWorkOrPeerReview(peerReview.getSubjectExternalIdentifier());
    }
    // Check that we are not changing the visibility
    if (isApiRequest && !createFlag) {
        Visibility updatedVisibility = peerReview.getVisibility();
        validateVisibilityDoesntChange(updatedVisibility, originalVisibility);
    }
}
Also used : FundingTitle(org.orcid.jaxb.model.record_v2.FundingTitle) Arrays(java.util.Arrays) Year(org.orcid.jaxb.model.common_v2.Year) InvalidPutCodeException(org.orcid.core.exception.InvalidPutCodeException) WorkTitle(org.orcid.jaxb.model.record_v2.WorkTitle) OrcidStringUtils(org.orcid.utils.OrcidStringUtils) ActivityTitleValidationException(org.orcid.core.exception.ActivityTitleValidationException) OrcidDuplicatedActivityException(org.orcid.core.exception.OrcidDuplicatedActivityException) Contributor(org.orcid.jaxb.model.common_v2.Contributor) ContributorOrcid(org.orcid.jaxb.model.common_v2.ContributorOrcid) Amount(org.orcid.jaxb.model.common_v2.Amount) PojoUtil(org.orcid.pojo.ajaxForm.PojoUtil) HashMap(java.util.HashMap) GroupIdRecord(org.orcid.jaxb.model.groupid_v2.GroupIdRecord) StringUtils(org.apache.commons.lang3.StringUtils) OrcidValidationException(org.orcid.core.exception.OrcidValidationException) Day(org.orcid.jaxb.model.common_v2.Day) Matcher(java.util.regex.Matcher) ActivityTypeValidationException(org.orcid.core.exception.ActivityTypeValidationException) Source(org.orcid.jaxb.model.common_v2.Source) Map(java.util.Map) VisibilityMismatchException(org.orcid.core.exception.VisibilityMismatchException) CitationType(org.orcid.jaxb.model.record_v2.CitationType) Employment(org.orcid.jaxb.model.record_v2.Employment) Funding(org.orcid.jaxb.model.record_v2.Funding) SourceEntity(org.orcid.persistence.jpa.entities.SourceEntity) PublicationDate(org.orcid.jaxb.model.common_v2.PublicationDate) Resource(javax.annotation.Resource) Month(org.orcid.jaxb.model.common_v2.Month) Collectors(java.util.stream.Collectors) WorkContributors(org.orcid.jaxb.model.record_v2.WorkContributors) ActivityIdentifierValidationException(org.orcid.core.exception.ActivityIdentifierValidationException) WorkType(org.orcid.jaxb.model.record_v2.WorkType) Iso3166Country(org.orcid.jaxb.model.common_v2.Iso3166Country) Visibility(org.orcid.jaxb.model.common_v2.Visibility) Relationship(org.orcid.jaxb.model.record_v2.Relationship) Work(org.orcid.jaxb.model.record_v2.Work) ExternalID(org.orcid.jaxb.model.record_v2.ExternalID) Pattern(java.util.regex.Pattern) PeerReview(org.orcid.jaxb.model.record_v2.PeerReview) SiteConstants(org.orcid.persistence.constants.SiteConstants) Education(org.orcid.jaxb.model.record_v2.Education) ExternalIDs(org.orcid.jaxb.model.record_v2.ExternalIDs) PeerReviewType(org.orcid.jaxb.model.record_v2.PeerReviewType) HashMap(java.util.HashMap) InvalidPutCodeException(org.orcid.core.exception.InvalidPutCodeException) ActivityTypeValidationException(org.orcid.core.exception.ActivityTypeValidationException) Visibility(org.orcid.jaxb.model.common_v2.Visibility) ActivityIdentifierValidationException(org.orcid.core.exception.ActivityIdentifierValidationException)

Aggregations

Test (org.junit.Test)72 PeerReview (org.orcid.jaxb.model.record_v2.PeerReview)66 ClientResponse (com.sun.jersey.api.client.ClientResponse)35 Response (javax.ws.rs.core.Response)17 DBUnitTest (org.orcid.test.DBUnitTest)17 ExternalID (org.orcid.jaxb.model.record_v2.ExternalID)16 Url (org.orcid.jaxb.model.common_v2.Url)10 SourceEntity (org.orcid.persistence.jpa.entities.SourceEntity)10 PeerReview (org.orcid.jaxb.model.record_rc1.PeerReview)9 PeerReviewEntity (org.orcid.persistence.jpa.entities.PeerReviewEntity)8 ArrayList (java.util.ArrayList)7 BaseTest (org.orcid.core.BaseTest)6 WorkExternalIdentifier (org.orcid.jaxb.model.record_rc1.WorkExternalIdentifier)6 WorkExternalIdentifierId (org.orcid.jaxb.model.record_rc1.WorkExternalIdentifierId)6 PeerReview (org.orcid.jaxb.model.record_rc3.PeerReview)6 PeerReview (org.orcid.jaxb.model.record_rc4.PeerReview)6 Funding (org.orcid.jaxb.model.record_v2.Funding)6 ResearcherUrl (org.orcid.jaxb.model.record_v2.ResearcherUrl)6 Title (org.orcid.jaxb.model.common_v2.Title)5 Education (org.orcid.jaxb.model.record_v2.Education)5