Examples with ExternalID org.orcid.jaxb.model.record_rc3.ExternalID used on opensource projects

Example 66 with ExternalID

use of org.orcid.jaxb.model.record_rc3.ExternalID in project ORCID-Source by ORCID.

the class WorkManagerTest method testCreateWorkWithBulk_TwoSelf_DupError.

@Test
public void testCreateWorkWithBulk_TwoSelf_DupError() {
    String orcid = "0000-0000-0000-0003";
    Long time = System.currentTimeMillis();
    when(sourceManager.retrieveSourceEntity()).thenReturn(new SourceEntity(new ClientDetailsEntity(CLIENT_1_ID)));
    WorkBulk bulk = new WorkBulk();
    // Work # 1
    Work work1 = new Work();
    WorkTitle title1 = new WorkTitle();
    title1.setTitle(new Title("Work # 1"));
    work1.setWorkTitle(title1);
    ExternalIDs extIds1 = new ExternalIDs();
    ExternalID extId1 = new ExternalID();
    extId1.setRelationship(Relationship.SELF);
    extId1.setType("isbn");
    extId1.setUrl(new Url("http://isbn/1/" + time));
    extId1.setValue("isbn-1");
    extIds1.getExternalIdentifier().add(extId1);
    work1.setWorkExternalIdentifiers(extIds1);
    work1.setWorkType(WorkType.BOOK);
    bulk.getBulk().add(work1);
    // Work # 2
    Work work2 = new Work();
    WorkTitle title2 = new WorkTitle();
    title2.setTitle(new Title("Work # 2"));
    work2.setWorkTitle(title2);
    ExternalIDs extIds2 = new ExternalIDs();
    ExternalID extId2 = new ExternalID();
    extId2.setRelationship(Relationship.SELF);
    extId2.setType("isbn");
    extId2.setUrl(new Url("http://isbn/1/" + time));
    extId2.setValue("isbn-1");
    extIds2.getExternalIdentifier().add(extId2);
    work2.setWorkExternalIdentifiers(extIds2);
    work2.setWorkType(WorkType.BOOK);
    bulk.getBulk().add(work2);
    WorkBulk updatedBulk = workManager.createWorks(orcid, bulk);
    assertNotNull(updatedBulk);
    assertEquals(2, updatedBulk.getBulk().size());
    assertTrue(updatedBulk.getBulk().get(0) instanceof Work);
    assertNotNull(((Work) updatedBulk.getBulk().get(0)).getPutCode());
    assertEquals(Relationship.SELF, ((Work) updatedBulk.getBulk().get(0)).getExternalIdentifiers().getExternalIdentifier().get(0).getRelationship());
    assertEquals("isbn-1", ((Work) updatedBulk.getBulk().get(0)).getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
    assertTrue(updatedBulk.getBulk().get(1) instanceof OrcidError);
    assertEquals(Integer.valueOf(9021), ((OrcidError) updatedBulk.getBulk().get(1)).getErrorCode());
    assertEquals("409 Conflict: You have already added this activity (matched by external identifiers.) If you are trying to edit the item, please use PUT instead of POST.", ((OrcidError) updatedBulk.getBulk().get(1)).getDeveloperMessage());
    workManager.removeWorks(orcid, Arrays.asList(((Work) updatedBulk.getBulk().get(0)).getPutCode()));
}

Example 67 with ExternalID

use of org.orcid.jaxb.model.record_rc3.ExternalID in project ORCID-Source by ORCID.

the class WorkManagerTest method testCreateWorksWithBulkAllOK.

@Test
public void testCreateWorksWithBulkAllOK() {
    String orcid = "0000-0000-0000-0003";
    Long time = System.currentTimeMillis();
    when(sourceManager.retrieveSourceEntity()).thenReturn(new SourceEntity(new ClientDetailsEntity(CLIENT_1_ID)));
    WorkBulk bulk = new WorkBulk();
    for (int i = 0; i < 5; i++) {
        Work work = new Work();
        WorkTitle title = new WorkTitle();
        title.setTitle(new Title("Bulk work " + i + " " + time));
        work.setWorkTitle(title);
        ExternalIDs extIds = new ExternalIDs();
        ExternalID extId = new ExternalID();
        extId.setRelationship(Relationship.SELF);
        extId.setType("doi");
        extId.setUrl(new Url("http://doi/" + i + "/" + time));
        extId.setValue("doi-" + i + "-" + time);
        extIds.getExternalIdentifier().add(extId);
        work.setWorkExternalIdentifiers(extIds);
        work.setWorkType(WorkType.BOOK);
        bulk.getBulk().add(work);
    }
    bulk = workManager.createWorks(orcid, bulk);
    assertNotNull(bulk);
    assertEquals(5, bulk.getBulk().size());
    for (int i = 0; i < 5; i++) {
        assertTrue(Work.class.isAssignableFrom(bulk.getBulk().get(i).getClass()));
        Work w = (Work) bulk.getBulk().get(i);
        assertNotNull(w.getPutCode());
        assertTrue(0L < w.getPutCode());
        assertEquals("Bulk work " + i + " " + time, w.getWorkTitle().getTitle().getContent());
        assertNotNull(w.getExternalIdentifiers().getExternalIdentifier());
        assertEquals("doi-" + i + "-" + time, w.getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
        Work w1 = workManager.getWork(orcid, w.getPutCode());
        assertNotNull(w1);
        assertEquals("Bulk work " + i + " " + time, w1.getWorkTitle().getTitle().getContent());
        // Delete the work
        assertTrue(workManager.checkSourceAndRemoveWork(orcid, w1.getPutCode()));
    }
}

Example 68 with ExternalID

use of org.orcid.jaxb.model.record_rc3.ExternalID in project ORCID-Source by ORCID.

the class WorkManagerTest method testCreateWorksWithBulkSomeOKSomeErrors.

@Test
public void testCreateWorksWithBulkSomeOKSomeErrors() {
    String orcid = "0000-0000-0000-0003";
    when(sourceManager.retrieveSourceEntity()).thenReturn(new SourceEntity(new ClientDetailsEntity(CLIENT_2_ID)));
    // Lets send a bulk of 6 works
    WorkBulk bulk = new WorkBulk();
    // Work # 1 - Fine
    Work work1 = getWork(null);
    ExternalID extId = new ExternalID();
    extId.setRelationship(Relationship.SELF);
    extId.setType("doi");
    extId.setUrl(new Url("http://doi/1"));
    extId.setValue("doi-1");
    work1.getExternalIdentifiers().getExternalIdentifier().clear();
    work1.getExternalIdentifiers().getExternalIdentifier().add(extId);
    work1.getWorkTitle().getTitle().setContent("Work # 1");
    bulk.getBulk().add(work1);
    // Work # 2 - Fine
    Work work2 = getWork(null);
    work2.getWorkTitle().getTitle().setContent("Work # 2");
    bulk.getBulk().add(work2);
    // Work # 3 - Duplicated of Work # 1
    Work work3 = getWork(null);
    work3.getExternalIdentifiers().getExternalIdentifier().clear();
    work3.getExternalIdentifiers().getExternalIdentifier().add(extId);
    work3.getWorkTitle().getTitle().setContent("Work # 3");
    bulk.getBulk().add(work3);
    // Work # 4 - Fine
    Work work4 = getWork("new-ext-id-" + System.currentTimeMillis());
    work4.getWorkTitle().getTitle().setContent("Work # 4");
    bulk.getBulk().add(work4);
    // Work # 5 - Duplicated of existing work
    Work work5 = getWork(null);
    ExternalID dupExtId = new ExternalID();
    dupExtId.setRelationship(Relationship.SELF);
    dupExtId.setType("doi");
    dupExtId.setValue("1");
    work5.getExternalIdentifiers().getExternalIdentifier().clear();
    work5.getExternalIdentifiers().getExternalIdentifier().add(dupExtId);
    work5.getWorkTitle().getTitle().setContent("Work # 5");
    bulk.getBulk().add(work5);
    // Work # 6 - No title specified
    Work work6 = getWork(null);
    work6.getWorkTitle().getTitle().setContent(null);
    bulk.getBulk().add(work6);
    bulk = workManager.createWorks(orcid, bulk);
    assertNotNull(bulk);
    assertEquals(6, bulk.getBulk().size());
    List<Long> worksToDelete = new ArrayList<Long>();
    for (int i = 0; i < bulk.getBulk().size(); i++) {
        BulkElement element = bulk.getBulk().get(i);
        switch(i) {
            case 0:
            case 1:
            case 3:
                assertTrue(Work.class.isAssignableFrom(element.getClass()));
                Work work = (Work) element;
                assertNotNull(work);
                assertNotNull(work.getPutCode());
                if (i == 0) {
                    assertEquals("Work # 1", work.getWorkTitle().getTitle().getContent());
                } else if (i == 1) {
                    assertEquals("Work # 2", work.getWorkTitle().getTitle().getContent());
                } else {
                    assertEquals("Work # 4", work.getWorkTitle().getTitle().getContent());
                }
                worksToDelete.add(work.getPutCode());
                break;
            case 2:
            case 4:
            case 5:
                assertTrue("Error on id: " + i, OrcidError.class.isAssignableFrom(element.getClass()));
                OrcidError error = (OrcidError) element;
                if (i == 2) {
                    assertEquals(Integer.valueOf(9021), error.getErrorCode());
                } else if (i == 4) {
                    assertEquals(Integer.valueOf(9021), error.getErrorCode());
                } else {
                    assertEquals(Integer.valueOf(9022), error.getErrorCode());
                }
                break;
        }
    }
    // Delete new works
    for (Long putCode : worksToDelete) {
        assertTrue(workManager.checkSourceAndRemoveWork(orcid, putCode));
    }
}

Example 69 with ExternalID

use of org.orcid.jaxb.model.record_rc3.ExternalID in project ORCID-Source by ORCID.

the class PeerReviewManagerReadOnlyImpl method groupPeerReviews.

/**
 * Generate a grouped list of peer reviews with the given list of peer reviews
 *
 * @param peerReviews
 *          The list of peer reviews to group
 * @param justPublic
 *          Specify if we want to group only the public elements in the given list
 * @return PeerReviews element with the PeerReviewSummary elements grouped
 */
@Override
public PeerReviews groupPeerReviews(List<PeerReviewSummary> peerReviews, boolean justPublic) {
    ActivitiesGroupGenerator groupGenerator = new ActivitiesGroupGenerator();
    PeerReviews result = new PeerReviews();
    for (PeerReviewSummary peerReview : peerReviews) {
        if (justPublic && !peerReview.getVisibility().equals(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC)) {
        // If it is just public and the funding is not public, just
        // ignore it
        } else {
            groupGenerator.group(peerReview);
        }
    }
    List<ActivitiesGroup> groups = groupGenerator.getGroups();
    for (ActivitiesGroup group : groups) {
        Set<GroupAble> groupKeys = group.getGroupKeys();
        Set<GroupableActivity> activities = group.getActivities();
        PeerReviewGroup peerReviewGroup = new PeerReviewGroup();
        // Fill the peer review groups with the external identifiers
        if (groupKeys == null || groupKeys.isEmpty()) {
            // Initialize the ids as an empty list
            peerReviewGroup.getIdentifiers().getExternalIdentifier();
        } else {
            for (GroupAble groupKey : groupKeys) {
                PeerReviewGroupKey key = (PeerReviewGroupKey) groupKey;
                ExternalID id = new ExternalID();
                // TODO: this is not nice
                id.setType(PeerReviewGroupKey.KEY_NAME);
                id.setValue(key.getGroupId());
                peerReviewGroup.getIdentifiers().getExternalIdentifier().add(id);
            }
        }
        // Fill the peer review group with the list of activities
        for (GroupableActivity activity : activities) {
            PeerReviewSummary peerReviewSummary = (PeerReviewSummary) activity;
            peerReviewGroup.getPeerReviewSummary().add(peerReviewSummary);
        }
        // Sort the peer reviews
        Collections.sort(peerReviewGroup.getPeerReviewSummary(), new GroupableActivityComparator());
        result.getPeerReviewGroup().add(peerReviewGroup);
    }
    return result;
}

Example 70 with ExternalID

use of org.orcid.jaxb.model.record_rc3.ExternalID in project ORCID-Source by ORCID.

the class ProfileFundingManagerReadOnlyImpl method groupFundings.

/**
 * Generate a grouped list of funding with the given list of funding
 *
 * @param fundings
 *          The list of fundings to group
 * @param justPublic
 *          Specify if we want to group only the public elements in the given list
 * @return Fundings element with the FundingSummary elements grouped
 */
@Override
public Fundings groupFundings(List<FundingSummary> fundings, boolean justPublic) {
    ActivitiesGroupGenerator groupGenerator = new ActivitiesGroupGenerator();
    Fundings result = new Fundings();
    for (FundingSummary funding : fundings) {
        if (justPublic && !funding.getVisibility().equals(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC)) {
        // If it is just public and the funding is not public, just
        // ignore it
        } else {
            groupGenerator.group(funding);
        }
    }
    List<ActivitiesGroup> groups = groupGenerator.getGroups();
    for (ActivitiesGroup group : groups) {
        Set<GroupAble> externalIdentifiers = group.getGroupKeys();
        Set<GroupableActivity> activities = group.getActivities();
        FundingGroup fundingGroup = new FundingGroup();
        // Fill the funding groups with the external identifiers
        if (externalIdentifiers == null || externalIdentifiers.isEmpty()) {
            // Initialize the ids as an empty list
            fundingGroup.getIdentifiers().getExternalIdentifier();
        } else {
            for (GroupAble extId : externalIdentifiers) {
                ExternalID fundingExtId = (ExternalID) extId;
                fundingGroup.getIdentifiers().getExternalIdentifier().add(fundingExtId.clone());
            }
        }
        // Fill the funding group with the list of activities
        for (GroupableActivity activity : activities) {
            FundingSummary fundingSummary = (FundingSummary) activity;
            fundingGroup.getFundingSummary().add(fundingSummary);
        }
        // Sort the fundings
        Collections.sort(fundingGroup.getFundingSummary(), new GroupableActivityComparator());
        result.getFundingGroup().add(fundingGroup);
    }
    return result;
}