Examples with ExternalID org.orcid.jaxb.model.record_rc3.ExternalID used on opensource projects

Example 76 with ExternalID

use of org.orcid.jaxb.model.record_rc3.ExternalID in project ORCID-Source by ORCID.

the class ValidateV2RC4Identifiers method testWork.

/**
 * <common:external-ids>
 *                <common:external-id>
 *                        <common:external-id-type>agr</common:external-id-type>
 *                        <common:external-id-value>work:external-identifier-id</common:external-id-value>
 *                        <common:external-id-url>http://orcid.org</common:external-id-url>
 *                        <common:external-id-relationship>self</common:external-id-relationship>
 *                </common:external-id>
 *        </common:external-ids>
 *
 * @throws SAXException
 * @throws IOException
 * @throws JAXBException
 * @throws ParserConfigurationException
 */
@Test
public void testWork() throws SAXException, IOException, JAXBException, ParserConfigurationException {
    Work work = unmarshallFromPath("/record_2.0_rc4/samples/work-2.0_rc4.xml", Work.class);
    ExternalID id = work.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("agr", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    Validator validator = getValidator("work");
    validator.validate(marshall(Work.class, work));
    validator.validate(marshallToDOM(Work.class, work));
    work = unmarshallFromPath("/record_2.0_rc4/samples/work-full-2.0_rc4.xml", Work.class);
    id = work.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("agr", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    validator.validate(marshall(Work.class, work));
    validator.validate(marshallToDOM(Work.class, work));
}

Example 77 with ExternalID

use of org.orcid.jaxb.model.record_rc3.ExternalID in project ORCID-Source by ORCID.

the class ValidateV2_1IdentifiersTest method testPeerReview.

/**
 * Test both types of identifier here
 *
 * @throws SAXException
 * @throws IOException
 * @throws JAXBException
 * @throws ParserConfigurationException
 */
@Test
public void testPeerReview() throws SAXException, IOException, JAXBException, ParserConfigurationException {
    PeerReview peerReview = unmarshallFromPath("/record_2.1/samples/read_samples/peer-review-2.1.xml", PeerReview.class);
    ExternalID id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    ExternalID subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
    Validator validator = getValidator("peer-review");
    validator.validate(marshall(PeerReview.class, peerReview));
    validator.validate(marshallToDOM(PeerReview.class, peerReview));
    // do the full record too
    peerReview = unmarshallFromPath("/record_2.1/samples/read_samples/peer-review-full-2.1.xml", PeerReview.class);
    id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
}

Example 78 with ExternalID

use of org.orcid.jaxb.model.record_rc3.ExternalID in project ORCID-Source by ORCID.

the class OrcidSecurityManagerImpl method filterExternalIdentifiers.

/**
 * Filter the group external identifiers to match the external identifiers
 * that belongs to the activities it have after filtering
 *
 * @param group
 *            The group we want to filter the external identifiers
 */
private void filterExternalIdentifiers(Group group) {
    // Iterate over every external identifier and check if it is still
    // present in the list of filtered elements
    ExternalIDs extIds = group.getIdentifiers();
    Iterator<ExternalID> extIdsIt = extIds.getExternalIdentifier().iterator();
    while (extIdsIt.hasNext()) {
        ExternalID extId = extIdsIt.next();
        boolean found = false;
        for (GroupableActivity summary : group.getActivities()) {
            if (summary.getExternalIdentifiers() != null) {
                if (summary.getExternalIdentifiers().getExternalIdentifier().contains(extId)) {
                    found = true;
                    break;
                }
            }
        }
        // If the ext id is not found, remove it from the list of ext ids
        if (!found) {
            extIdsIt.remove();
        }
    }
}

Example 79 with ExternalID

use of org.orcid.jaxb.model.record_rc3.ExternalID in project ORCID-Source by ORCID.

the class ActivitiesGroupGenerator_GroupingFundingsTest method generateFundings.

/**
 * funding-1 -> A, B, C
 * funding-2 -> C, D, E
 * funding-3 -> X, Y, Z
 * funding-4 -> Y, B, 1
 * funding-5 -> M, N, O
 * funding-6 -> O, P, Q
 * funding-7 -> 1, 2, B
 * funding-8 -> No external identifiers
 * funding-9 -> No external identifiers
 */
private Map<String, FundingSummary> generateFundings() {
    Map<String, FundingSummary> result = new HashMap<String, FundingSummary>();
    for (int i = 1; i < 10; i++) {
        String name = "funding-" + i;
        FundingSummary funding = new FundingSummary();
        FundingTitle title = new FundingTitle();
        title.setTitle(new Title(name));
        funding.setTitle(title);
        ExternalIDs fei = new ExternalIDs();
        switch(i) {
            case 1:
                ExternalID f1 = new ExternalID();
                f1.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f1.setValue("A");
                ExternalID f2 = new ExternalID();
                f2.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f2.setValue("B");
                ExternalID f3 = new ExternalID();
                f3.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f3.setValue("C");
                fei.getExternalIdentifier().add(f1);
                fei.getExternalIdentifier().add(f2);
                fei.getExternalIdentifier().add(f3);
                break;
            case 2:
                ExternalID f4 = new ExternalID();
                f4.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f4.setValue("C");
                ExternalID f5 = new ExternalID();
                f5.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f5.setValue("D");
                ExternalID f6 = new ExternalID();
                f6.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f6.setValue("E");
                fei.getExternalIdentifier().add(f4);
                fei.getExternalIdentifier().add(f5);
                fei.getExternalIdentifier().add(f6);
                break;
            case 3:
                ExternalID f7 = new ExternalID();
                f7.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f7.setValue("X");
                ExternalID f8 = new ExternalID();
                f8.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f8.setValue("Y");
                ExternalID f9 = new ExternalID();
                f9.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f9.setValue("Z");
                fei.getExternalIdentifier().add(f7);
                fei.getExternalIdentifier().add(f8);
                fei.getExternalIdentifier().add(f9);
                break;
            case 4:
                ExternalID f10 = new ExternalID();
                f10.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f10.setValue("Y");
                ExternalID f11 = new ExternalID();
                f11.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f11.setValue("B");
                ExternalID f12 = new ExternalID();
                f12.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f12.setValue("1");
                fei.getExternalIdentifier().add(f10);
                fei.getExternalIdentifier().add(f11);
                fei.getExternalIdentifier().add(f12);
                break;
            case 5:
                ExternalID f13 = new ExternalID();
                f13.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f13.setValue("M");
                ExternalID f14 = new ExternalID();
                f14.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f14.setValue("N");
                ExternalID f15 = new ExternalID();
                f15.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f15.setValue("O");
                fei.getExternalIdentifier().add(f13);
                fei.getExternalIdentifier().add(f14);
                fei.getExternalIdentifier().add(f15);
                break;
            case 6:
                ExternalID f16 = new ExternalID();
                f16.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f16.setValue("O");
                ExternalID f17 = new ExternalID();
                f17.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f17.setValue("P");
                ExternalID f18 = new ExternalID();
                f18.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f18.setValue("Q");
                fei.getExternalIdentifier().add(f16);
                fei.getExternalIdentifier().add(f17);
                fei.getExternalIdentifier().add(f18);
                break;
            case 7:
                ExternalID f19 = new ExternalID();
                f19.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f19.setValue("1");
                ExternalID f20 = new ExternalID();
                f20.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f20.setValue("2");
                ExternalID f21 = new ExternalID();
                f21.setType(org.orcid.jaxb.model.message.FundingExternalIdentifierType.GRANT_NUMBER.value());
                f21.setValue("B");
                fei.getExternalIdentifier().add(f19);
                fei.getExternalIdentifier().add(f20);
                fei.getExternalIdentifier().add(f21);
                break;
        }
        funding.setExternalIdentifiers(fei);
        result.put(name, funding);
    }
    return result;
}

Example 80 with ExternalID

use of org.orcid.jaxb.model.record_rc3.ExternalID in project ORCID-Source by ORCID.

the class ExternalIDValidatorTest method testValidateWorkOrPeerReview.

@Test
public void testValidateWorkOrPeerReview() {
    // call for ExternalID and ExternalIDs
    // ID valid
    ExternalID id1 = new ExternalID();
    id1.setRelationship(Relationship.SELF);
    id1.setType("doi");
    id1.setValue("value1");
    id1.setUrl(new Url("http://value1.com"));
    validator.validateWorkOrPeerReview(id1);
    // ID bad type
    try {
        id1.setType("invalid");
        validator.validateWorkOrPeerReview(id1);
        fail("no exception thrown for invalid type");
    } catch (Exception e) {
        if (!(e instanceof ActivityIdentifierValidationException))
            throw e;
    }
    // id null
    try {
        id1.setType(null);
        validator.validateWorkOrPeerReview(id1);
        fail("no exception thrown for invalid type");
    } catch (Exception e) {
        if (!(e instanceof ActivityIdentifierValidationException))
            throw e;
    }
    ExternalIDs ids = new ExternalIDs();
    ids.getExternalIdentifier().add(id1);
    // IDS one invalid
    id1.setType("invalid");
    try {
        validator.validateWorkOrPeerReview(ids);
        fail("no exception thrown for invalid type");
    } catch (Exception e) {
        if (!(e instanceof ActivityIdentifierValidationException))
            throw e;
    }
    // IDS one valid (lowercase)
    id1.setType("doi");
    validator.validateWorkOrPeerReview(ids);
    // IDS two valid
    ExternalID id2 = new ExternalID();
    id2.setRelationship(Relationship.SELF);
    id2.setType("source-work-id");
    id2.setValue("value2");
    id2.setUrl(new Url("http://value1.com"));
    ids.getExternalIdentifier().add(id2);
    validator.validateWorkOrPeerReview(ids);
    // IDS one invalid, one valid
    id2.setType("not-a-type");
    try {
        validator.validateWorkOrPeerReview(ids);
        fail("no exception thrown for invalid type");
    } catch (Exception e) {
        if (!(e instanceof ActivityIdentifierValidationException))
            throw e;
    }
}