Examples with PeerReview org.orcid.jaxb.model.record_rc4.PeerReview used on opensource projects

Example 6 with PeerReview

use of org.orcid.jaxb.model.record_rc4.PeerReview in project ORCID-Source by ORCID.

the class Utils method getPeerReview.

public static PeerReview getPeerReview() {
    PeerReview peerReview = new PeerReview();
    ExternalIDs weis = new ExternalIDs();
    ExternalID wei1 = new ExternalID();
    wei1.setRelationship(Relationship.PART_OF);
    wei1.setUrl(new Url("http://myUrl.com"));
    wei1.setValue("work-external-identifier-id");
    wei1.setType(WorkExternalIdentifierType.DOI.value());
    weis.getExternalIdentifier().add(wei1);
    peerReview.setExternalIdentifiers(weis);
    peerReview.setGroupId("issn:0000003");
    peerReview.setOrganization(getOrganization());
    peerReview.setRole(Role.CHAIR);
    peerReview.setSubjectContainerName(new Title("subject-container-name"));
    peerReview.setSubjectExternalIdentifier(wei1);
    WorkTitle workTitle = new WorkTitle();
    workTitle.setTitle(new Title("work-title"));
    peerReview.setSubjectName(workTitle);
    peerReview.setSubjectType(WorkType.DATA_SET);
    peerReview.setType(PeerReviewType.EVALUATION);
    return peerReview;
}

Example 7 with PeerReview

use of org.orcid.jaxb.model.record_rc4.PeerReview in project ORCID-Source by ORCID.

the class ActivityValidator method validatePeerReview.

public void validatePeerReview(PeerReview peerReview, SourceEntity sourceEntity, boolean createFlag, boolean isApiRequest, Visibility originalVisibility) {
    if (peerReview.getExternalIdentifiers() == null || peerReview.getExternalIdentifiers().getExternalIdentifier().isEmpty()) {
        throw new ActivityIdentifierValidationException();
    }
    if (peerReview.getPutCode() != null && createFlag) {
        Map<String, String> params = new HashMap<String, String>();
        params.put("clientName", sourceEntity.getSourceName());
        throw new InvalidPutCodeException(params);
    }
    if (peerReview.getType() == null) {
        Map<String, String> params = new HashMap<String, String>();
        String peerReviewTypes = Arrays.stream(PeerReviewType.values()).map(element -> element.value()).collect(Collectors.joining(", "));
        params.put("type", "peer review type");
        params.put("values", peerReviewTypes);
        throw new ActivityTypeValidationException();
    }
    externalIDValidator.validateWorkOrPeerReview(peerReview.getExternalIdentifiers());
    if (peerReview.getSubjectExternalIdentifier() != null) {
        externalIDValidator.validateWorkOrPeerReview(peerReview.getSubjectExternalIdentifier());
    }
    // Check that we are not changing the visibility
    if (isApiRequest && !createFlag) {
        Visibility updatedVisibility = peerReview.getVisibility();
        validateVisibilityDoesntChange(updatedVisibility, originalVisibility);
    }
}

Example 8 with PeerReview

use of org.orcid.jaxb.model.record_rc4.PeerReview in project ORCID-Source by ORCID.

the class PeerReviewForm method toPeerReview.

public PeerReview toPeerReview() {
    PeerReview peerReview = new PeerReview();
    // Put Code
    if (!PojoUtil.isEmpty(putCode)) {
        peerReview.setPutCode(Long.valueOf(putCode.getValue()));
    }
    // Visibility
    if (visibility != null) {
        peerReview.setVisibility(visibility);
    }
    // Completion date
    if (completionDate != null) {
        peerReview.setCompletionDate(new FuzzyDate(completionDate.toFuzzyDate()));
    }
    // External identifiers
    if (externalIdentifiers != null && !externalIdentifiers.isEmpty()) {
        peerReview.setExternalIdentifiers(new ExternalIDs());
        for (WorkExternalIdentifier extId : externalIdentifiers) {
            peerReview.getExternalIdentifiers().getExternalIdentifier().add(extId.toRecordWorkExternalIdentifier());
        }
    }
    // Set Organization
    Organization organization = new Organization();
    OrganizationAddress organizationAddress = new OrganizationAddress();
    organization.setAddress(organizationAddress);
    if (!PojoUtil.isEmpty(orgName)) {
        organization.setName(orgName.getValue());
    }
    if (!PojoUtil.isEmpty(city)) {
        organizationAddress.setCity(city.getValue());
    }
    if (!PojoUtil.isEmpty(region)) {
        organizationAddress.setRegion(region.getValue());
    }
    if (!PojoUtil.isEmpty(country)) {
        organizationAddress.setCountry(Iso3166Country.fromValue(country.getValue()));
    }
    if (!PojoUtil.isEmpty(disambiguatedOrganizationSourceId)) {
        organization.setDisambiguatedOrganization(new DisambiguatedOrganization());
        organization.getDisambiguatedOrganization().setDisambiguatedOrganizationIdentifier(disambiguatedOrganizationSourceId.getValue());
        organization.getDisambiguatedOrganization().setDisambiguationSource(disambiguationSource.getValue());
    }
    peerReview.setOrganization(organization);
    // Role
    if (!PojoUtil.isEmpty(role)) {
        peerReview.setRole(Role.fromValue(role.getValue()));
    }
    // Type
    if (!PojoUtil.isEmpty(type)) {
        peerReview.setType(PeerReviewType.fromValue(type.getValue()));
    }
    // Url
    if (!PojoUtil.isEmpty(url)) {
        peerReview.setUrl(new Url(url.getValue()));
    }
    // Group id
    if (!PojoUtil.isEmpty(groupId)) {
        peerReview.setGroupId(groupId.getValue());
    }
    // Subject external id
    if (!PojoUtil.isEmpty(subjectExternalIdentifier)) {
        ExternalID subjectExtId = new ExternalID();
        if (!PojoUtil.isEmpty(subjectExternalIdentifier.getRelationship())) {
            subjectExtId.setRelationship(Relationship.fromValue(subjectExternalIdentifier.getRelationship().getValue()));
        }
        if (!PojoUtil.isEmpty(subjectExternalIdentifier.getUrl())) {
            subjectExtId.setUrl(new Url(subjectExternalIdentifier.getUrl().getValue()));
        }
        if (!PojoUtil.isEmpty(subjectExternalIdentifier.getWorkExternalIdentifierId())) {
            subjectExtId.setValue(subjectExternalIdentifier.getWorkExternalIdentifierId().getValue());
        }
        if (!PojoUtil.isEmpty(subjectExternalIdentifier.getWorkExternalIdentifierType())) {
            subjectExtId.setType(subjectExternalIdentifier.getWorkExternalIdentifierType().getValue());
        }
        peerReview.setSubjectExternalIdentifier(subjectExtId);
    }
    // Subject container name
    if (!PojoUtil.isEmpty(subjectContainerName)) {
        Title containerName = new Title(subjectContainerName.getValue());
        peerReview.setSubjectContainerName(containerName);
    }
    // Subject type
    if (!PojoUtil.isEmpty(subjectType)) {
        peerReview.setSubjectType(WorkType.fromValue(subjectType.getValue()));
    }
    // Subject name and subject translated name
    if (!PojoUtil.isEmpty(subjectName) || !PojoUtil.isEmpty(translatedSubjectName)) {
        WorkTitle workTitle = new WorkTitle();
        if (!PojoUtil.isEmpty(subjectName)) {
            workTitle.setTitle(new Title(subjectName.getValue()));
        }
        if (translatedSubjectName != null) {
            org.orcid.jaxb.model.common_v2.TranslatedTitle tTitle = new org.orcid.jaxb.model.common_v2.TranslatedTitle();
            if (!PojoUtil.isEmpty(translatedSubjectName.getContent())) {
                tTitle.setContent(translatedSubjectName.getContent());
            }
            if (!PojoUtil.isEmpty(translatedSubjectName.getLanguageCode())) {
                tTitle.setLanguageCode(translatedSubjectName.getLanguageCode());
            }
            workTitle.setTranslatedTitle(tTitle);
        }
        peerReview.setSubjectName(workTitle);
    }
    //Subject url
    if (!PojoUtil.isEmpty(subjectUrl)) {
        peerReview.setSubjectUrl(new Url(subjectUrl.getValue()));
    }
    return peerReview;
}

Example 9 with PeerReview

use of org.orcid.jaxb.model.record_rc4.PeerReview in project ORCID-Source by ORCID.

the class AccessTokenSecurityChecksTest method testTokenIssuedForOneUserFailForOtherUsers_20API.

@Test
public void testTokenIssuedForOneUserFailForOtherUsers_20API() throws JSONException, InterruptedException, URISyntaxException {
    String accessToken = getNonCachedAccessTokens(getUser2OrcidId(), getUser2Password(), getScopes(), getClient1ClientId(), getClient1ClientSecret(), getClient1RedirectUri());
    String orcid = getUser1OrcidId();
    Long putCode = 1L;
    Address address = (Address) unmarshallFromPath("/record_2.0/samples/read_samples/address-2.0.xml", Address.class);
    evaluateResponse(memberV2ApiClient.createAddress(orcid, address, accessToken));
    Education education = (Education) unmarshallFromPath("/record_2.0/samples/read_samples/education-2.0.xml", Education.class);
    evaluateResponse(memberV2ApiClient.createEducationJson(orcid, education, accessToken));
    evaluateResponse(memberV2ApiClient.createEducationXml(orcid, education, accessToken));
    Employment employment = (Employment) unmarshallFromPath("/record_2.0/samples/read_samples/employment-2.0.xml", Employment.class);
    evaluateResponse(memberV2ApiClient.createEmploymentJson(orcid, employment, accessToken));
    evaluateResponse(memberV2ApiClient.createEmploymentXml(orcid, employment, accessToken));
    PersonExternalIdentifier externalIdentifier = (PersonExternalIdentifier) unmarshallFromPath("/record_2.0/samples/read_samples/external-identifier-2.0.xml", PersonExternalIdentifier.class);
    evaluateResponse(memberV2ApiClient.createExternalIdentifier(orcid, externalIdentifier, accessToken));
    Funding funding = (Funding) unmarshallFromPath("/record_2.0/samples/read_samples/funding-2.0.xml", Funding.class);
    evaluateResponse(memberV2ApiClient.createFundingJson(orcid, funding, accessToken));
    evaluateResponse(memberV2ApiClient.createFundingXml(orcid, funding, accessToken));
    Keyword keyword = (Keyword) unmarshallFromPath("/record_2.0/samples/read_samples/keyword-2.0.xml", Keyword.class);
    evaluateResponse(memberV2ApiClient.createKeyword(orcid, keyword, accessToken));
    OtherName otherName = (OtherName) unmarshallFromPath("/record_2.0/samples/read_samples/other-name-2.0.xml", OtherName.class);
    evaluateResponse(memberV2ApiClient.createOtherName(orcid, otherName, accessToken));
    PeerReview peerReview = (PeerReview) unmarshallFromPath("/record_2.0/samples/read_samples/peer-review-2.0.xml", PeerReview.class);
    evaluateResponse(memberV2ApiClient.createPeerReviewJson(orcid, peerReview, accessToken));
    evaluateResponse(memberV2ApiClient.createPeerReviewXml(orcid, peerReview, accessToken));
    ResearcherUrl rUrl = (ResearcherUrl) unmarshallFromPath("/record_2.0/samples/read_samples/researcher-url-2.0.xml", ResearcherUrl.class);
    evaluateResponse(memberV2ApiClient.createResearcherUrls(orcid, rUrl, accessToken));
    Work work = (Work) unmarshallFromPath("/record_2.0/samples/read_samples/work-2.0.xml", Work.class);
    evaluateResponse(memberV2ApiClient.createWorkJson(orcid, work, accessToken));
    evaluateResponse(memberV2ApiClient.createWorkXml(orcid, work, accessToken));
    evaluateResponse(memberV2ApiClient.deleteAddress(orcid, putCode, accessToken));
    evaluateResponse(memberV2ApiClient.deleteEducationXml(orcid, putCode, accessToken));
    evaluateResponse(memberV2ApiClient.deleteEmploymentXml(orcid, putCode, accessToken));
    evaluateResponse(memberV2ApiClient.deleteExternalIdentifier(orcid, putCode, accessToken));
    evaluateResponse(memberV2ApiClient.deleteFundingXml(orcid, putCode, accessToken));
    evaluateResponse(memberV2ApiClient.deleteKeyword(orcid, putCode, accessToken));
    evaluateResponse(memberV2ApiClient.deleteOtherName(orcid, putCode, accessToken));
    evaluateResponse(memberV2ApiClient.deletePeerReviewXml(orcid, putCode, accessToken));
    evaluateResponse(memberV2ApiClient.deleteResearcherUrl(orcid, putCode, accessToken));
    evaluateResponse(memberV2ApiClient.deleteWorkXml(orcid, putCode, accessToken));
    address.setPutCode(putCode);
    evaluateResponse(memberV2ApiClient.updateAddress(orcid, address, accessToken));
    education.setPutCode(putCode);
    evaluateResponse(memberV2ApiClient.updateEducation(orcid, education, accessToken));
    employment.setPutCode(putCode);
    evaluateResponse(memberV2ApiClient.updateEmployment(orcid, employment, accessToken));
    externalIdentifier.setPutCode(putCode);
    evaluateResponse(memberV2ApiClient.updateExternalIdentifier(orcid, externalIdentifier, accessToken));
    funding.setPutCode(putCode);
    evaluateResponse(memberV2ApiClient.updateFunding(orcid, funding, accessToken));
    keyword.setPutCode(putCode);
    evaluateResponse(memberV2ApiClient.updateKeyword(orcid, keyword, accessToken));
    otherName.setPutCode(putCode);
    evaluateResponse(memberV2ApiClient.updateOtherName(orcid, otherName, accessToken));
    peerReview.setPutCode(putCode);
    evaluateResponse(memberV2ApiClient.updatePeerReview(orcid, peerReview, accessToken));
    rUrl.setPutCode(putCode);
    evaluateResponse(memberV2ApiClient.updateResearcherUrls(orcid, rUrl, accessToken));
    work.setPutCode(putCode);
    evaluateResponse(memberV2ApiClient.updateWork(orcid, work, accessToken));
    evaluateResponse(memberV2ApiClient.getResearcherUrls(orcid, accessToken));
    evaluateResponse(memberV2ApiClient.viewAddresses(orcid, accessToken));
    evaluateResponse(memberV2ApiClient.viewExternalIdentifiers(orcid, accessToken));
    evaluateResponse(memberV2ApiClient.viewKeywords(orcid, accessToken));
    evaluateResponse(memberV2ApiClient.viewOtherNames(orcid, accessToken));
    evaluateResponse(memberV2ApiClient.viewBiography(orcid, accessToken));
    evaluateResponse(memberV2ApiClient.viewPersonalDetailsXML(orcid, accessToken));
    evaluateResponse(memberV2ApiClient.viewActivities(orcid, accessToken));
    evaluateResponse(memberV2ApiClient.viewPerson(orcid, accessToken));
}

Example 10 with PeerReview

use of org.orcid.jaxb.model.record_rc4.PeerReview in project ORCID-Source by ORCID.

the class BlackBoxBaseRC4 method unmarshallFromPath.

public Object unmarshallFromPath(String path, Class<?> type) {
    try (Reader reader = new InputStreamReader(getClass().getResourceAsStream(path))) {
        Object obj = unmarshall(reader, type);
        Object result = null;
        if (Address.class.equals(type)) {
            result = (Address) obj;
        } else if (Education.class.equals(type)) {
            result = (Education) obj;
        } else if (Employment.class.equals(type)) {
            result = (Employment) obj;
        } else if (Funding.class.equals(type)) {
            result = (Funding) obj;
        } else if (Keyword.class.equals(type)) {
            result = (Keyword) obj;
        } else if (Work.class.equals(type)) {
            result = (Work) obj;
        } else if (PeerReview.class.equals(type)) {
            result = (PeerReview) obj;
        } else if (ResearcherUrl.class.equals(type)) {
            result = (ResearcherUrl) obj;
        } else if (PersonalDetails.class.equals(type)) {
            result = (PersonalDetails) obj;
        } else if (OtherName.class.equals(type)) {
            result = (OtherName) obj;
        } else if (PersonExternalIdentifier.class.equals(type)) {
            result = (PersonExternalIdentifier) obj;
        }
        return result;
    } catch (IOException e) {
        throw new RuntimeException("Error reading notification from classpath", e);
    }
}