Examples with PeerReview org.orcid.jaxb.model.record_rc4.PeerReview used on opensource projects

Example 26 with PeerReview

use of org.orcid.jaxb.model.record_rc4.PeerReview in project ORCID-Source by ORCID.

the class PeerReviewManagerTest method displayIndexIsSetTo_0_FromAPI.

@Test
public void displayIndexIsSetTo_0_FromAPI() {
    when(sourceManager.retrieveSourceEntity()).thenReturn(new SourceEntity(new ClientDetailsEntity(CLIENT_1_ID)));
    PeerReview p1 = getPeerReview("fromAPI-1");
    p1 = peerReviewManager.createPeerReview(claimedOrcid, p1, true);
    PeerReviewEntity p = peerReviewDao.find(p1.getPutCode());
    assertNotNull(91);
    assertEquals(Long.valueOf(0), p.getDisplayIndex());
}

Example 27 with PeerReview

use of org.orcid.jaxb.model.record_rc4.PeerReview in project ORCID-Source by ORCID.

the class PeerReviewManagerTest method getPeerReview.

private PeerReview getPeerReview(String extIdValue) {
    PeerReview peerReview = new PeerReview();
    peerReview.setRole(Role.CHAIR);
    ExternalIDs extIds = new ExternalIDs();
    ExternalID extId = new ExternalID();
    extId.setRelationship(Relationship.SELF);
    extId.setType("doi");
    extId.setUrl(new Url("http://orcid.org"));
    if (extIdValue == null) {
        extId.setValue("ext-id-value");
    } else {
        extId.setValue("ext-id-value-" + extIdValue);
    }
    extIds.getExternalIdentifier().add(extId);
    peerReview.setExternalIdentifiers(extIds);
    if (extIdValue == null) {
        peerReview.setSubjectContainerName(new Title("Peer review title"));
    } else {
        peerReview.setSubjectContainerName(new Title("Peer review title " + extIdValue));
    }
    peerReview.setSubjectExternalIdentifier(extId);
    Organization org = new Organization();
    org.setName("org-name");
    OrganizationAddress address = new OrganizationAddress();
    address.setCity("city");
    address.setCountry(Iso3166Country.US);
    org.setAddress(address);
    peerReview.setOrganization(org);
    peerReview.setType(PeerReviewType.EVALUATION);
    peerReview.setVisibility(Visibility.PUBLIC);
    return peerReview;
}

Example 28 with PeerReview

use of org.orcid.jaxb.model.record_rc4.PeerReview in project ORCID-Source by ORCID.

the class PeerReviewManagerTest method testAddMultipleModifiesIndexingStatus.

@Test
public void testAddMultipleModifiesIndexingStatus() {
    when(sourceManager.retrieveSourceEntity()).thenReturn(new SourceEntity(new ClientDetailsEntity(CLIENT_1_ID)));
    PeerReview p1 = getPeerReview("extId1");
    p1 = peerReviewManager.createPeerReview(claimedOrcid, p1, true);
    PeerReview p2 = getPeerReview("extId2");
    p2 = peerReviewManager.createPeerReview(claimedOrcid, p2, true);
    PeerReview p3 = getPeerReview("extId3");
    p3 = peerReviewManager.createPeerReview(claimedOrcid, p3, true);
    PeerReviewEntity entity1 = peerReviewDao.find(p1.getPutCode());
    PeerReviewEntity entity2 = peerReviewDao.find(p2.getPutCode());
    PeerReviewEntity entity3 = peerReviewDao.find(p3.getPutCode());
    assertNotNull(entity1.getDisplayIndex());
    assertNotNull(entity2.getDisplayIndex());
    assertNotNull(entity3.getDisplayIndex());
    assertEquals(Long.valueOf(0), entity3.getDisplayIndex());
    //Rollback all changes
    peerReviewDao.remove(entity1.getId());
    peerReviewDao.remove(entity2.getId());
    peerReviewDao.remove(entity3.getId());
}

Example 29 with PeerReview

use of org.orcid.jaxb.model.record_rc4.PeerReview in project ORCID-Source by ORCID.

the class ActivityValidatorTest method validatePeerReview_invalidExternalIdentifiersTest.

@Test(expected = ActivityIdentifierValidationException.class)
public void validatePeerReview_invalidExternalIdentifiersTest() {
    PeerReview pr = getPeerReview();
    pr.getExternalIdentifiers().getExternalIdentifier().get(0).setType(null);
    activityValidator.validatePeerReview(pr, null, true, true, Visibility.PUBLIC);
}

Example 30 with PeerReview

use of org.orcid.jaxb.model.record_rc4.PeerReview in project ORCID-Source by ORCID.

the class MemberV2Test method testViewActivitiesSummaries.

@Test
public void testViewActivitiesSummaries() throws JSONException, InterruptedException, URISyntaxException {
    long time = System.currentTimeMillis();
    String accessTokenForClient1 = getAccessToken();
    String accessTokenForClient2 = getAccessToken(getUser1OrcidId(), getUser1Password(), getScopes(), getClient2ClientId(), getClient2ClientSecret(), getClient2RedirectUri());
    Education education = (Education) unmarshallFromPath("/record_2.0_rc1/samples/education-2.0_rc1.xml", Education.class);
    education.setPutCode(null);
    education.setVisibility(Visibility.PUBLIC);
    Employment employment = (Employment) unmarshallFromPath("/record_2.0_rc1/samples/employment-2.0_rc1.xml", Employment.class);
    employment.setPutCode(null);
    employment.setVisibility(Visibility.PUBLIC);
    Funding funding = (Funding) unmarshallFromPath("/record_2.0_rc1/samples/funding-2.0_rc1.xml", Funding.class);
    funding.setPutCode(null);
    funding.setVisibility(Visibility.PUBLIC);
    funding.getExternalIdentifiers().getExternalIdentifier().clear();
    FundingExternalIdentifier fExtId = new FundingExternalIdentifier();
    fExtId.setType(FundingExternalIdentifierType.GRANT_NUMBER);
    fExtId.setValue("Funding Id " + time);
    fExtId.setRelationship(Relationship.SELF);
    funding.getExternalIdentifiers().getExternalIdentifier().add(fExtId);
    Work work = (Work) unmarshallFromPath("/record_2.0_rc1/samples/work-2.0_rc1.xml", Work.class);
    work.setPutCode(null);
    work.setVisibility(Visibility.PUBLIC);
    work.getExternalIdentifiers().getExternalIdentifier().clear();
    WorkExternalIdentifier wExtId = new WorkExternalIdentifier();
    wExtId.setWorkExternalIdentifierId(new WorkExternalIdentifierId("Work Id " + time));
    wExtId.setWorkExternalIdentifierType(WorkExternalIdentifierType.AGR);
    wExtId.setRelationship(Relationship.SELF);
    work.getExternalIdentifiers().getWorkExternalIdentifier().add(wExtId);
    PeerReview peerReview = (PeerReview) unmarshallFromPath("/record_2.0_rc1/samples/peer-review-2.0_rc1.xml", PeerReview.class);
    peerReview.setPutCode(null);
    peerReview.setVisibility(Visibility.PUBLIC);
    peerReview.setGroupId(groupRecords.get(0).getGroupId());
    peerReview.getExternalIdentifiers().getExternalIdentifier().clear();
    WorkExternalIdentifier pExtId = new WorkExternalIdentifier();
    pExtId.setWorkExternalIdentifierId(new WorkExternalIdentifierId("Work Id " + time));
    pExtId.setWorkExternalIdentifierType(WorkExternalIdentifierType.AGR);
    pExtId.setRelationship(Relationship.SELF);
    peerReview.getExternalIdentifiers().getExternalIdentifier().add(pExtId);
    ClientResponse postResponse = memberV2ApiClient.createEducationXml(this.getUser1OrcidId(), education, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    postResponse = memberV2ApiClient.createEmploymentXml(this.getUser1OrcidId(), employment, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    /**
         * Add 3 fundings 1 and 2 get grouped together 3 in another group
         * because it have different ext ids
         * **/
    // Add 1, the default funding
    postResponse = memberV2ApiClient.createFundingXml(this.getUser1OrcidId(), funding, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    funding.getTitle().getTitle().setContent("Funding # 2");
    FundingExternalIdentifier fExtId3 = new FundingExternalIdentifier();
    fExtId3.setType(FundingExternalIdentifierType.GRANT_NUMBER);
    fExtId3.setValue("extId3Value" + time);
    fExtId3.setRelationship(Relationship.SELF);
    funding.getExternalIdentifiers().getExternalIdentifier().add(fExtId3);
    funding.setVisibility(Visibility.PUBLIC);
    // Add 2, with the same ext ids +1
    postResponse = memberV2ApiClient.createFundingXml(this.getUser1OrcidId(), funding, accessTokenForClient2);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    funding.getTitle().getTitle().setContent("Funding # 3");
    FundingExternalIdentifier fExtId4 = new FundingExternalIdentifier();
    fExtId4.setType(FundingExternalIdentifierType.GRANT_NUMBER);
    fExtId4.setValue("extId4Value" + time);
    fExtId4.setRelationship(Relationship.SELF);
    funding.getExternalIdentifiers().getExternalIdentifier().clear();
    funding.getExternalIdentifiers().getExternalIdentifier().add(fExtId4);
    funding.setVisibility(Visibility.PUBLIC);
    // Add 3, with different ext ids
    postResponse = memberV2ApiClient.createFundingXml(this.getUser1OrcidId(), funding, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    /**
         * Add 3 works 1 and 2 get grouped together 3 in another group because
         * it have different ext ids 
         **/
    // Add 1, the default work
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    work.getWorkTitle().getTitle().setContent("Work # 2");
    WorkExternalIdentifier wExtId2 = new WorkExternalIdentifier();
    wExtId2.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
    wExtId2.setWorkExternalIdentifierId(new WorkExternalIdentifierId("doi-ext-id" + time));
    wExtId2.setRelationship(Relationship.SELF);
    work.getExternalIdentifiers().getExternalIdentifier().add(wExtId2);
    // Add 2, with the same ext ids +1
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work, accessTokenForClient2);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    work.getWorkTitle().getTitle().setContent("Work # 3");
    WorkExternalIdentifier wExtId3 = new WorkExternalIdentifier();
    wExtId3.setWorkExternalIdentifierType(WorkExternalIdentifierType.EID);
    wExtId3.setWorkExternalIdentifierId(new WorkExternalIdentifierId("eid-ext-id" + time));
    wExtId3.setRelationship(Relationship.SELF);
    work.getWorkExternalIdentifiers().getExternalIdentifier().clear();
    work.getWorkExternalIdentifiers().getExternalIdentifier().add(wExtId3);
    // Add 3, with different ext ids
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    /**
         * Add 4 peer reviews 1 and 2 get grouped together 3 in another group because
         * it have different group id 4 in another group because it doesnt have
         * any group id
         **/
    // Add 1, the default peer review
    postResponse = memberV2ApiClient.createPeerReviewXml(this.getUser1OrcidId(), peerReview, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    peerReview.setGroupId(groupRecords.get(0).getGroupId());
    peerReview.getSubjectName().getTitle().setContent("PeerReview # 2");
    peerReview.getCompletionDate().setDay(new Day(2));
    peerReview.getCompletionDate().setMonth(new Month(2));
    peerReview.getCompletionDate().setYear(new Year(2016));
    peerReview.setUrl(new Url("http://peer_review/2"));
    WorkExternalIdentifier pExtId2 = new WorkExternalIdentifier();
    pExtId2.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
    pExtId2.setWorkExternalIdentifierId(new WorkExternalIdentifierId("doi-ext-id" + System.currentTimeMillis()));
    pExtId2.setRelationship(Relationship.SELF);
    for (WorkExternalIdentifier wei : peerReview.getExternalIdentifiers().getExternalIdentifier()) {
        WorkExternalIdentifierId id = wei.getWorkExternalIdentifierId();
        id.setContent(id.getContent() + System.currentTimeMillis());
        wei.setWorkExternalIdentifierId(id);
    }
    peerReview.getExternalIdentifiers().getExternalIdentifier().add(pExtId2);
    // Add 2, with the same ext ids +1
    postResponse = memberV2ApiClient.createPeerReviewXml(this.getUser1OrcidId(), peerReview, accessTokenForClient2);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    peerReview.setGroupId(groupRecords.get(1).getGroupId());
    peerReview.getSubjectName().getTitle().setContent("PeerReview # 3");
    peerReview.getCompletionDate().setDay(new Day(3));
    peerReview.getCompletionDate().setMonth(new Month(3));
    peerReview.getCompletionDate().setYear(new Year(2017));
    peerReview.setUrl(new Url("http://peer_review/3"));
    WorkExternalIdentifier pExtId3 = new WorkExternalIdentifier();
    pExtId3.setWorkExternalIdentifierType(WorkExternalIdentifierType.EID);
    pExtId3.setWorkExternalIdentifierId(new WorkExternalIdentifierId("eid-ext-id" + System.currentTimeMillis()));
    pExtId3.setRelationship(Relationship.SELF);
    peerReview.getExternalIdentifiers().getExternalIdentifier().clear();
    peerReview.getExternalIdentifiers().getExternalIdentifier().add(pExtId3);
    // Add 3, with different ext ids
    postResponse = memberV2ApiClient.createPeerReviewXml(this.getUser1OrcidId(), peerReview, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    peerReview.setGroupId(groupRecords.get(0).getGroupId());
    peerReview.getSubjectName().getTitle().setContent("PeerReview # 4");
    peerReview.getCompletionDate().setDay(new Day(4));
    peerReview.getCompletionDate().setMonth(new Month(4));
    peerReview.getCompletionDate().setYear(new Year(2018));
    peerReview.setUrl(new Url("http://peer_review/4"));
    WorkExternalIdentifier pExtId4 = new WorkExternalIdentifier();
    pExtId4.setWorkExternalIdentifierType(WorkExternalIdentifierType.EID);
    pExtId4.setWorkExternalIdentifierId(new WorkExternalIdentifierId("eid-ext-id" + System.currentTimeMillis()));
    pExtId4.setRelationship(Relationship.SELF);
    peerReview.getExternalIdentifiers().getExternalIdentifier().clear();
    peerReview.getExternalIdentifiers().getExternalIdentifier().add(pExtId4);
    // Add 4, without ext ids
    postResponse = memberV2ApiClient.createPeerReviewXml(this.getUser1OrcidId(), peerReview, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    /**
         * Now, get the summaries and verify the following: - Education summary
         * is complete - Employment summary is complete - There are 3 groups of
         * fundings -- One group with 2 fundings -- One group with one funding
         * with ext ids -- One group with one funding without ext ids
         * 
         * - There are 3 groups of works -- One group with 2 works -- One group
         * with one work with ext ids -- One group with one work without ext ids
         * 
         * peer review -- There are 3 groups of peer reviews -- One group with 2 
         * peer reviews -- One groups with one peer review and ext ids -- One 
         * group with one peer review but without ext ids 
         **/
    ClientResponse activitiesResponse = memberV2ApiClient.viewActivities(this.getUser1OrcidId(), accessTokenForClient1);
    assertEquals(Response.Status.OK.getStatusCode(), activitiesResponse.getStatus());
    ActivitiesSummary activities = activitiesResponse.getEntity(ActivitiesSummary.class);
    assertNotNull(activities);
    assertFalse(activities.getEducations().getSummaries().isEmpty());
    boolean found = false;
    Long educationPutCode = null;
    for (EducationSummary summary : activities.getEducations().getSummaries()) {
        if (summary.getRoleTitle() != null && summary.getRoleTitle().equals("education:role-title")) {
            assertEquals("education:department-name", summary.getDepartmentName());
            assertEquals(FuzzyDate.valueOf(1848, 2, 2), summary.getStartDate());
            assertEquals(FuzzyDate.valueOf(1848, 2, 2), summary.getEndDate());
            educationPutCode = summary.getPutCode();
            found = true;
            break;
        }
    }
    assertTrue("Education not found", found);
    assertFalse(activities.getEmployments().getSummaries().isEmpty());
    found = false;
    Long employmentPutCode = null;
    for (EmploymentSummary summary : activities.getEmployments().getSummaries()) {
        if (summary.getRoleTitle() != null && summary.getRoleTitle().equals("affiliation:role-title")) {
            assertEquals("affiliation:department-name", summary.getDepartmentName());
            assertEquals(FuzzyDate.valueOf(1848, 2, 2), summary.getStartDate());
            assertEquals(FuzzyDate.valueOf(1848, 2, 2), summary.getEndDate());
            employmentPutCode = summary.getPutCode();
            found = true;
            break;
        }
    }
    assertTrue("Employment not found", found);
    assertNotNull(activities.getFundings());
    boolean found1 = false, found2 = false, found3 = false, found4 = false;
    List<Long> fundingPutCodes = new ArrayList<Long>();
    for (FundingGroup group : activities.getFundings().getFundingGroup()) {
        for (FundingSummary summary : group.getFundingSummary()) {
            if (summary.getTitle().getTitle().getContent().equals("common:title")) {
                found1 = true;
                fundingPutCodes.add(summary.getPutCode());
            } else if (summary.getTitle().getTitle().getContent().equals("Funding # 2")) {
                found2 = true;
                fundingPutCodes.add(summary.getPutCode());
            } else if (summary.getTitle().getTitle().getContent().equals("Funding # 3")) {
                found3 = true;
                fundingPutCodes.add(summary.getPutCode());
            }
        }
    }
    assertTrue("One of the fundings was not found: 1(" + found1 + ") 2(" + found2 + ") 3(" + found3 + ")", found1 == found2 == found3 == true);
    assertNotNull(activities.getWorks());
    found1 = found2 = found3 = false;
    List<Long> worksPutCodes = new ArrayList<Long>();
    for (WorkGroup group : activities.getWorks().getWorkGroup()) {
        for (WorkSummary summary : group.getWorkSummary()) {
            if (summary.getTitle().getTitle().getContent().equals("Current treatment of left main coronary artery disease")) {
                found1 = true;
                worksPutCodes.add(summary.getPutCode());
            } else if (summary.getTitle().getTitle().getContent().equals("Work # 2")) {
                found2 = true;
                worksPutCodes.add(summary.getPutCode());
            } else if (summary.getTitle().getTitle().getContent().equals("Work # 3")) {
                found3 = true;
                worksPutCodes.add(summary.getPutCode());
            }
        }
    }
    assertTrue("One of the works was not found: 1(" + found1 + ") 2(" + found2 + ") 3(" + found3 + ")", found1 == found2 == found3 == true);
    assertNotNull(activities.getPeerReviews());
    found1 = found2 = found3 = found4 = false;
    List<Long> peerReviewPutCodes = new ArrayList<Long>();
    for (PeerReviewGroup group : activities.getPeerReviews().getPeerReviewGroup()) {
        for (PeerReviewSummary summary : group.getPeerReviewSummary()) {
            if (summary.getCompletionDate() != null && summary.getCompletionDate().getYear() != null) {
                if (summary.getCompletionDate().getYear().getValue().equals("1848")) {
                    found1 = true;
                    peerReviewPutCodes.add(summary.getPutCode());
                } else if (summary.getCompletionDate().getYear().getValue().equals("2016")) {
                    found2 = true;
                    peerReviewPutCodes.add(summary.getPutCode());
                } else if (summary.getCompletionDate().getYear().getValue().equals("2017")) {
                    found3 = true;
                    peerReviewPutCodes.add(summary.getPutCode());
                } else if (summary.getCompletionDate().getYear().getValue().equals("2018")) {
                    found4 = true;
                    peerReviewPutCodes.add(summary.getPutCode());
                }
            }
        }
    }
    assertTrue("One of the peer reviews was not found: 1(" + found1 + ") 2(" + found2 + ") 3(" + found3 + ") 4(" + found4 + ")", found1 == found2 == found3 == found4 == true);
    //Delete all created elements
    ClientResponse deleteResponse = memberV2ApiClient.deleteEmploymentXml(this.getUser1OrcidId(), employmentPutCode, accessTokenForClient1);
    assertNotNull(deleteResponse);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
    deleteResponse = memberV2ApiClient.deleteEducationXml(this.getUser1OrcidId(), educationPutCode, accessTokenForClient1);
    assertNotNull(deleteResponse);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
    for (Long putCode : fundingPutCodes) {
        deleteResponse = memberV2ApiClient.deleteFundingXml(this.getUser1OrcidId(), putCode, accessTokenForClient1);
        assertNotNull(deleteResponse);
        if (Response.Status.NO_CONTENT.getStatusCode() != deleteResponse.getStatus()) {
            //It belongs to client2, so, delete it with client2 token
            deleteResponse = memberV2ApiClient.deleteFundingXml(this.getUser1OrcidId(), putCode, accessTokenForClient2);
            assertNotNull(deleteResponse);
            assertEquals("Unable to delete funding " + putCode, Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
        }
    }
    for (Long putCode : worksPutCodes) {
        deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode, accessTokenForClient1);
        assertNotNull(deleteResponse);
        if (Response.Status.NO_CONTENT.getStatusCode() != deleteResponse.getStatus()) {
            //It belongs to client2, so, delete it with client2 token
            deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode, accessTokenForClient2);
            assertNotNull(deleteResponse);
            assertEquals("Unable to delete work " + putCode, Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
        }
    }
    for (Long putCode : peerReviewPutCodes) {
        deleteResponse = memberV2ApiClient.deletePeerReviewXml(this.getUser1OrcidId(), putCode, accessTokenForClient1);
        assertNotNull(deleteResponse);
        if (Response.Status.NO_CONTENT.getStatusCode() != deleteResponse.getStatus()) {
            //It belongs to client2, so, delete it with client2 token
            deleteResponse = memberV2ApiClient.deletePeerReviewXml(this.getUser1OrcidId(), putCode, accessTokenForClient2);
            assertNotNull(deleteResponse);
            assertEquals("Unable to delete peer review " + putCode, Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
        }
    }
}