Examples with PeerReview org.orcid.jaxb.model.record_v2.PeerReview used on opensource projects

Example 46 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class SourceInActivitiesTest method sourceDoesntChange_PeerReview_Test.

@Test
public void sourceDoesntChange_PeerReview_Test() {
    when(mockSourceManager.retrieveSourceEntity()).thenReturn(new SourceEntity(new ProfileEntity(userOrcid)));
    PeerReview peerReview1 = getPeerReview(userOrcid);
    assertNotNull(peerReview1);
    assertNotNull(peerReview1.getSubjectName());
    assertNotNull(peerReview1.getSubjectName().getTitle());
    assertFalse(PojoUtil.isEmpty(peerReview1.getSubjectName().getTitle().getContent()));
    assertEquals(userOrcid, peerReview1.retrieveSourcePath());
    when(mockSourceManager.retrieveSourceEntity()).thenReturn(new SourceEntity(new ClientDetailsEntity(CLIENT_1_ID)));
    PeerReview peerReview2 = getPeerReview(userOrcid);
    assertNotNull(peerReview2);
    assertNotNull(peerReview2.getSubjectName());
    assertNotNull(peerReview2.getSubjectName().getTitle());
    assertFalse(PojoUtil.isEmpty(peerReview2.getSubjectName().getTitle().getContent()));
    assertEquals(CLIENT_1_ID, peerReview2.retrieveSourcePath());
    when(mockSourceManager.retrieveSourceEntity()).thenReturn(new SourceEntity(new ClientDetailsEntity(CLIENT_2_ID)));
    PeerReview peerReview3 = getPeerReview(userOrcid);
    assertNotNull(peerReview3);
    assertNotNull(peerReview3.getSubjectName());
    assertNotNull(peerReview3.getSubjectName().getTitle());
    assertFalse(PojoUtil.isEmpty(peerReview3.getSubjectName().getTitle().getContent()));
    assertEquals(CLIENT_2_ID, peerReview3.retrieveSourcePath());
    when(mockSourceManager.retrieveSourceEntity()).thenReturn(new SourceEntity(new ProfileEntity(userOrcid)));
    PeerReview peerReview4 = getPeerReview(userOrcid);
    assertNotNull(peerReview4);
    assertNotNull(peerReview4.getSubjectName());
    assertNotNull(peerReview4.getSubjectName().getTitle());
    assertFalse(PojoUtil.isEmpty(peerReview4.getSubjectName().getTitle().getContent()));
    assertEquals(userOrcid, peerReview4.retrieveSourcePath());
    PeerReview fromDb1 = peerReviewManager.getPeerReview(userOrcid, peerReview1.getPutCode());
    assertNotNull(fromDb1);
    assertEquals(userOrcid, fromDb1.retrieveSourcePath());
    PeerReview fromDb2 = peerReviewManager.getPeerReview(userOrcid, peerReview2.getPutCode());
    assertNotNull(fromDb2);
    assertEquals(CLIENT_1_ID, fromDb2.retrieveSourcePath());
    PeerReview fromDb3 = peerReviewManager.getPeerReview(userOrcid, peerReview3.getPutCode());
    assertNotNull(fromDb3);
    assertEquals(CLIENT_2_ID, fromDb3.retrieveSourcePath());
    PeerReview fromDb4 = peerReviewManager.getPeerReview(userOrcid, peerReview4.getPutCode());
    assertNotNull(fromDb4);
    assertEquals(userOrcid, fromDb4.retrieveSourcePath());
}

Example 47 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class MapperFacadeFactory method getPeerReviewMapperFacade.

public MapperFacade getPeerReviewMapperFacade() {
    MapperFactory mapperFactory = getNewMapperFactory();
    ConverterFactory converterFactory = mapperFactory.getConverterFactory();
    converterFactory.registerConverter("workExternalIdentifiersConverterId", new JSONWorkExternalIdentifiersConverterV2());
    converterFactory.registerConverter("workExternalIdentifierConverterId", new JSONPeerReviewWorkExternalIdentifierConverterV2());
    // do same as work
    ClassMapBuilder<PeerReview, PeerReviewEntity> classMap = mapperFactory.classMap(PeerReview.class, PeerReviewEntity.class);
    addV2CommonFields(classMap);
    registerSourceConverters(mapperFactory, classMap);
    classMap.field("url.value", "url");
    classMap.field("organization.name", "org.name");
    classMap.field("organization.address.city", "org.city");
    classMap.field("organization.address.region", "org.region");
    classMap.field("organization.address.country", "org.country");
    classMap.field("organization.disambiguatedOrganization.disambiguatedOrganizationIdentifier", "org.orgDisambiguated.sourceId");
    classMap.field("organization.disambiguatedOrganization.disambiguationSource", "org.orgDisambiguated.sourceType");
    classMap.field("groupId", "groupId");
    classMap.field("subjectType", "subjectType");
    classMap.field("subjectUrl.value", "subjectUrl");
    classMap.field("subjectName.title.content", "subjectName");
    classMap.field("subjectName.translatedTitle.content", "subjectTranslatedName");
    classMap.field("subjectName.translatedTitle.languageCode", "subjectTranslatedNameLanguageCode");
    classMap.field("subjectContainerName.content", "subjectContainerName");
    classMap.fieldMap("externalIdentifiers", "externalIdentifiersJson").converter("workExternalIdentifiersConverterId").add();
    classMap.fieldMap("subjectExternalIdentifier", "subjectExternalIdentifiersJson").converter("workExternalIdentifierConverterId").add();
    classMap.register();
    ClassMapBuilder<PeerReviewSummary, PeerReviewEntity> peerReviewSummaryClassMap = mapperFactory.classMap(PeerReviewSummary.class, PeerReviewEntity.class);
    addV2CommonFields(peerReviewSummaryClassMap);
    registerSourceConverters(mapperFactory, peerReviewSummaryClassMap);
    peerReviewSummaryClassMap.fieldMap("externalIdentifiers", "externalIdentifiersJson").converter("workExternalIdentifiersConverterId").add();
    peerReviewSummaryClassMap.field("organization.name", "org.name");
    peerReviewSummaryClassMap.field("organization.address.city", "org.city");
    peerReviewSummaryClassMap.field("organization.address.region", "org.region");
    peerReviewSummaryClassMap.field("organization.address.country", "org.country");
    peerReviewSummaryClassMap.field("organization.disambiguatedOrganization.disambiguatedOrganizationIdentifier", "org.orgDisambiguated.sourceId");
    peerReviewSummaryClassMap.field("organization.disambiguatedOrganization.disambiguationSource", "org.orgDisambiguated.sourceType");
    peerReviewSummaryClassMap.register();
    mapperFactory.classMap(FuzzyDate.class, CompletionDateEntity.class).field("year.value", "year").field("month.value", "month").field("day.value", "day").register();
    return mapperFactory.getMapperFacade();
}

Example 48 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class PeerReviewManagerReadOnlyImpl method groupPeerReviews.

/**
 * Generate a grouped list of peer reviews with the given list of peer reviews
 *
 * @param peerReviews
 *          The list of peer reviews to group
 * @param justPublic
 *          Specify if we want to group only the public elements in the given list
 * @return PeerReviews element with the PeerReviewSummary elements grouped
 */
@Override
public PeerReviews groupPeerReviews(List<PeerReviewSummary> peerReviews, boolean justPublic) {
    ActivitiesGroupGenerator groupGenerator = new ActivitiesGroupGenerator();
    PeerReviews result = new PeerReviews();
    for (PeerReviewSummary peerReview : peerReviews) {
        if (justPublic && !peerReview.getVisibility().equals(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC)) {
        // If it is just public and the funding is not public, just
        // ignore it
        } else {
            groupGenerator.group(peerReview);
        }
    }
    List<ActivitiesGroup> groups = groupGenerator.getGroups();
    for (ActivitiesGroup group : groups) {
        Set<GroupAble> groupKeys = group.getGroupKeys();
        Set<GroupableActivity> activities = group.getActivities();
        PeerReviewGroup peerReviewGroup = new PeerReviewGroup();
        // Fill the peer review groups with the external identifiers
        if (groupKeys == null || groupKeys.isEmpty()) {
            // Initialize the ids as an empty list
            peerReviewGroup.getIdentifiers().getExternalIdentifier();
        } else {
            for (GroupAble groupKey : groupKeys) {
                PeerReviewGroupKey key = (PeerReviewGroupKey) groupKey;
                ExternalID id = new ExternalID();
                // TODO: this is not nice
                id.setType(PeerReviewGroupKey.KEY_NAME);
                id.setValue(key.getGroupId());
                peerReviewGroup.getIdentifiers().getExternalIdentifier().add(id);
            }
        }
        // Fill the peer review group with the list of activities
        for (GroupableActivity activity : activities) {
            PeerReviewSummary peerReviewSummary = (PeerReviewSummary) activity;
            peerReviewGroup.getPeerReviewSummary().add(peerReviewSummary);
        }
        // Sort the peer reviews
        Collections.sort(peerReviewGroup.getPeerReviewSummary(), new GroupableActivityComparator());
        result.getPeerReviewGroup().add(peerReviewGroup);
    }
    return result;
}

Example 49 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class ValidateV2IdentifiersTest method testPeerReview.

/**
 * Test both types of identifier here
 *
 * @throws SAXException
 * @throws IOException
 * @throws JAXBException
 * @throws ParserConfigurationException
 */
@Test
public void testPeerReview() throws SAXException, IOException, JAXBException, ParserConfigurationException {
    PeerReview peerReview = unmarshallFromPath("/record_2.0/samples/read_samples/peer-review-2.0.xml", PeerReview.class);
    ExternalID id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    ExternalID subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
    Validator validator = getValidator("peer-review");
    validator.validate(marshall(PeerReview.class, peerReview));
    validator.validate(marshallToDOM(PeerReview.class, peerReview));
    // do the full record too
    peerReview = unmarshallFromPath("/record_2.0/samples/read_samples/peer-review-full-2.0.xml", PeerReview.class);
    id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
}

Example 50 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class ValidateV2RC3Identifiers method testPeerReview.

/**
 * Test both types of identifier here
 *
 * @throws SAXException
 * @throws IOException
 * @throws JAXBException
 * @throws ParserConfigurationException
 */
@Test
public void testPeerReview() throws SAXException, IOException, JAXBException, ParserConfigurationException {
    PeerReview peerReview = unmarshallFromPath("/record_2.0_rc3/samples/peer-review-2.0_rc3.xml", PeerReview.class);
    ExternalID id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    ExternalID subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
    Validator validator = getValidator("peer-review");
    validator.validate(marshall(PeerReview.class, peerReview));
    validator.validate(marshallToDOM(PeerReview.class, peerReview));
    // do the full record too
    peerReview = unmarshallFromPath("/record_2.0_rc3/samples/peer-review-full-2.0_rc3.xml", PeerReview.class);
    id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
}