Examples with PeerReview org.orcid.jaxb.model.record_v2.PeerReview used on opensource projects

Example 51 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class ValidateV2RC4Identifiers method testPeerReview.

/**
 * Test both types of identifier here
 *
 * @throws SAXException
 * @throws IOException
 * @throws JAXBException
 * @throws ParserConfigurationException
 */
@Test
public void testPeerReview() throws SAXException, IOException, JAXBException, ParserConfigurationException {
    PeerReview peerReview = unmarshallFromPath("/record_2.0_rc4/samples/peer-review-2.0_rc4.xml", PeerReview.class);
    ExternalID id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    ExternalID subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
    Validator validator = getValidator("peer-review");
    validator.validate(marshall(PeerReview.class, peerReview));
    validator.validate(marshallToDOM(PeerReview.class, peerReview));
    // do the full record too
    peerReview = unmarshallFromPath("/record_2.0_rc4/samples/peer-review-full-2.0_rc4.xml", PeerReview.class);
    id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
}

Example 52 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class ValidateV2_1IdentifiersTest method testPeerReview.

/**
 * Test both types of identifier here
 *
 * @throws SAXException
 * @throws IOException
 * @throws JAXBException
 * @throws ParserConfigurationException
 */
@Test
public void testPeerReview() throws SAXException, IOException, JAXBException, ParserConfigurationException {
    PeerReview peerReview = unmarshallFromPath("/record_2.1/samples/read_samples/peer-review-2.1.xml", PeerReview.class);
    ExternalID id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    ExternalID subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
    Validator validator = getValidator("peer-review");
    validator.validate(marshall(PeerReview.class, peerReview));
    validator.validate(marshallToDOM(PeerReview.class, peerReview));
    // do the full record too
    peerReview = unmarshallFromPath("/record_2.1/samples/read_samples/peer-review-full-2.1.xml", PeerReview.class);
    id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
}

Example 53 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class PeerReviewManagerImpl method createPeerReview.

@Override
public PeerReview createPeerReview(String orcid, PeerReview peerReview, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    // If request comes from the API, perform the validations
    if (isApiRequest) {
        // Validate it have at least one ext id
        activityValidator.validatePeerReview(peerReview, sourceEntity, true, isApiRequest, null);
        List<PeerReviewEntity> peerReviews = peerReviewDao.getByUser(orcid, getLastModified(orcid));
        // duplicates
        if (!sourceEntity.getSourceId().equals(orcid)) {
            if (peerReviews != null) {
                for (PeerReviewEntity entity : peerReviews) {
                    PeerReview existing = jpaJaxbPeerReviewAdapter.toPeerReview(entity);
                    activityValidator.checkExternalIdentifiersForDuplicates(peerReview.getExternalIdentifiers(), existing.getExternalIdentifiers(), existing.getSource(), sourceEntity);
                }
            }
        } else {
            // check vocab of external identifiers
            externalIDValidator.validateWorkOrPeerReview(peerReview.getExternalIdentifiers());
            externalIDValidator.validateWorkOrPeerReview(peerReview.getSubjectExternalIdentifier());
        }
        validateGroupId(peerReview);
    }
    PeerReviewEntity entity = jpaJaxbPeerReviewAdapter.toPeerReviewEntity(peerReview);
    // Updates the give organization with the latest organization from
    // database
    OrgEntity updatedOrganization = orgManager.getOrgEntity(peerReview);
    entity.setOrg(updatedOrganization);
    // Set the source
    if (sourceEntity.getSourceProfile() != null) {
        entity.setSourceId(sourceEntity.getSourceProfile().getId());
    }
    if (sourceEntity.getSourceClient() != null) {
        entity.setClientSourceId(sourceEntity.getSourceClient().getId());
    }
    ProfileEntity profile = profileEntityCacheManager.retrieve(orcid);
    entity.setProfile(profile);
    setIncomingPrivacy(entity, profile);
    DisplayIndexCalculatorHelper.setDisplayIndexOnNewEntity(entity, isApiRequest);
    peerReviewDao.persist(entity);
    peerReviewDao.flush();
    notificationManager.sendAmendEmail(orcid, AmendedSection.PEER_REVIEW, createItemList(entity));
    return jpaJaxbPeerReviewAdapter.toPeerReview(entity);
}

Example 54 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class PeerReviewManagerImpl method updatePeerReview.

@Override
public PeerReview updatePeerReview(String orcid, PeerReview peerReview, boolean isApiRequest) {
    PeerReviewEntity existingEntity = peerReviewDao.getPeerReview(orcid, peerReview.getPutCode());
    Visibility originalVisibility = existingEntity.getVisibility();
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    // Save the original source
    String existingSourceId = existingEntity.getSourceId();
    String existingClientSourceId = existingEntity.getClientSourceId();
    // If request comes from the API perform validations
    if (isApiRequest) {
        activityValidator.validatePeerReview(peerReview, sourceEntity, false, isApiRequest, originalVisibility);
        validateGroupId(peerReview);
        List<PeerReview> existingReviews = this.findPeerReviews(orcid);
        for (PeerReview existing : existingReviews) {
            // Dont compare the updated peer review with the DB version
            if (!existing.getPutCode().equals(peerReview.getPutCode())) {
                activityValidator.checkExternalIdentifiersForDuplicates(peerReview.getExternalIdentifiers(), existing.getExternalIdentifiers(), existing.getSource(), sourceManager.retrieveSourceEntity());
            }
        }
    } else {
        // check vocab of external identifiers
        externalIDValidator.validateWorkOrPeerReview(peerReview.getExternalIdentifiers());
        externalIDValidator.validateWorkOrPeerReview(peerReview.getSubjectExternalIdentifier());
    }
    PeerReviewEntity updatedEntity = new PeerReviewEntity();
    orcidSecurityManager.checkSource(existingEntity);
    jpaJaxbPeerReviewAdapter.toPeerReviewEntity(peerReview, updatedEntity);
    updatedEntity.setProfile(new ProfileEntity(orcid));
    updatedEntity.setVisibility(originalVisibility);
    // Be sure it doesn't overwrite the source
    updatedEntity.setSourceId(existingSourceId);
    updatedEntity.setClientSourceId(existingClientSourceId);
    OrgEntity updatedOrganization = orgManager.getOrgEntity(peerReview);
    updatedEntity.setOrg(updatedOrganization);
    updatedEntity = peerReviewDao.merge(updatedEntity);
    peerReviewDao.flush();
    notificationManager.sendAmendEmail(orcid, AmendedSection.PEER_REVIEW, createItemList(updatedEntity));
    return jpaJaxbPeerReviewAdapter.toPeerReview(updatedEntity);
}

Example 55 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class JpaJaxbPeerReviewAdapterTest method testToOrgAffiliationRelationEntity.

@Test
public void testToOrgAffiliationRelationEntity() throws JAXBException {
    PeerReview e = getPeerReview(true);
    assertNotNull(e);
    PeerReviewEntity pe = jpaJaxbPeerReviewAdapter.toPeerReviewEntity(e);
    assertNotNull(pe);
    // General info
    assertEquals(Long.valueOf(12345), pe.getId());
    assertEquals(Visibility.PRIVATE.value(), pe.getVisibility().value());
    assertEquals("{\"workExternalIdentifier\":[{\"relationship\":\"SELF\",\"url\":{\"value\":\"http://orcid.org\"},\"workExternalIdentifierType\":\"SOURCE_WORK_ID\",\"workExternalIdentifierId\":{\"content\":\"work:external-identifier-id\"}}]}", pe.getExternalIdentifiersJson());
    assertEquals("reviewer", pe.getRole().value());
    assertEquals("review", pe.getType().value());
    assertEquals("peer-review:url", pe.getUrl());
    // Dates
    assertEquals(Integer.valueOf(2), pe.getCompletionDate().getDay());
    assertEquals(Integer.valueOf(2), pe.getCompletionDate().getMonth());
    assertEquals(Integer.valueOf(1848), pe.getCompletionDate().getYear());
    // Source
    assertNull(pe.getSourceId());
    assertNull(pe.getClientSourceId());
    assertNull(pe.getElementSourceId());
    // Check org values
    assertEquals("common:name", pe.getOrg().getName());
    assertEquals("common:city", pe.getOrg().getCity());
    assertEquals("common:region", pe.getOrg().getRegion());
    assertEquals(Iso3166Country.AF.value(), pe.getOrg().getCountry().value());
    assertEquals("common:disambiguated-organization-identifier", pe.getOrg().getOrgDisambiguated().getSourceId());
    assertEquals("common:disambiguation-source", pe.getOrg().getOrgDisambiguated().getSourceType());
    // Check subject
    assertEquals("{\"relationship\":\"SELF\",\"url\":{\"value\":\"http://orcid.org\"},\"workExternalIdentifierType\":\"DOI\",\"workExternalIdentifierId\":{\"content\":\"peer-review:subject-external-identifier-id\"}}", pe.getSubjectExternalIdentifiersJson());
    assertEquals("peer-review:subject-container-name", pe.getSubjectContainerName());
    assertEquals("peer-review:subject-name", pe.getSubjectName());
    assertEquals("peer-review:subject-translated-name", pe.getSubjectTranslatedName());
    assertEquals("en", pe.getSubjectTranslatedNameLanguageCode());
    assertEquals("peer-review:subject-url", pe.getSubjectUrl());
    assertEquals(WorkType.JOURNAL_ARTICLE, pe.getSubjectType());
    // Check group id
    assertEquals("orcid-generated:12345", pe.getGroupId());
}