Examples with Organization org.orcid.jaxb.model.v3.dev1.common.Organization used on opensource projects

Example 6 with Organization

use of org.orcid.jaxb.model.v3.dev1.common.Organization in project ORCID-Source by ORCID.

the class PeerReviewManagerTest method getPeerReview.

private PeerReview getPeerReview(String extIdValue) {
    PeerReview peerReview = new PeerReview();
    peerReview.setRole(Role.CHAIR);
    ExternalIDs extIds = new ExternalIDs();
    ExternalID extId = new ExternalID();
    extId.setRelationship(Relationship.SELF);
    extId.setType("doi");
    extId.setUrl(new Url("http://orcid.org"));
    if (extIdValue == null) {
        extId.setValue("ext-id-value");
    } else {
        extId.setValue("ext-id-value-" + extIdValue);
    }
    extIds.getExternalIdentifier().add(extId);
    peerReview.setExternalIdentifiers(extIds);
    if (extIdValue == null) {
        peerReview.setSubjectContainerName(new Title("Peer review title"));
    } else {
        peerReview.setSubjectContainerName(new Title("Peer review title " + extIdValue));
    }
    peerReview.setSubjectExternalIdentifier(extId);
    Organization org = new Organization();
    org.setName("org-name");
    OrganizationAddress address = new OrganizationAddress();
    address.setCity("city");
    address.setCountry(Iso3166Country.US);
    org.setAddress(address);
    DisambiguatedOrganization disambiguatedOrg = new DisambiguatedOrganization();
    disambiguatedOrg.setDisambiguatedOrganizationIdentifier("abc456");
    disambiguatedOrg.setDisambiguationSource("WDB");
    org.setDisambiguatedOrganization(disambiguatedOrg);
    peerReview.setOrganization(org);
    peerReview.setType(PeerReviewType.EVALUATION);
    peerReview.setVisibility(Visibility.PUBLIC);
    return peerReview;
}

Example 7 with Organization

use of org.orcid.jaxb.model.v3.dev1.common.Organization in project ORCID-Source by ORCID.

the class ActivityValidatorTest method getOrganization.

public Organization getOrganization() {
    Organization org = new Organization();
    OrganizationAddress address = new OrganizationAddress();
    address.setCity("city");
    address.setCountry(Iso3166Country.US);
    address.setRegion("region");
    org.setAddress(address);
    org.setName("name");
    org.setDisambiguatedOrganization(getDisambiguatedOrganization());
    return org;
}

Example 8 with Organization

use of org.orcid.jaxb.model.v3.dev1.common.Organization in project ORCID-Source by ORCID.

the class AffiliationsManagerImpl method updateAffiliation.

public Affiliation updateAffiliation(String orcid, Affiliation affiliation, boolean isApiRequest, AffiliationType type) {
    OrgAffiliationRelationEntity entity = orgAffiliationRelationDao.getOrgAffiliationRelation(orcid, affiliation.getPutCode());
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    // Save the original source
    String existingSourceId = entity.getSourceId();
    String existingClientSourceId = entity.getClientSourceId();
    org.orcid.jaxb.model.common_v2.Visibility originalVisibility = entity.getVisibility();
    orcidSecurityManager.checkSource(entity);
    activityValidator.validateAffiliation(affiliation, sourceEntity, false, isApiRequest, org.orcid.jaxb.model.v3.dev1.common.Visibility.fromValue(originalVisibility.value()));
    if (isApiRequest) {
        checkAffiliationExternalIDsForDuplicates(orcid, affiliation, sourceEntity);
    }
    switch(type) {
        case DISTINCTION:
            jpaJaxbDistinctionAdapter.toOrgAffiliationRelationEntity((Distinction) affiliation, entity);
            break;
        case EDUCATION:
            jpaJaxbEducationAdapter.toOrgAffiliationRelationEntity((Education) affiliation, entity);
            break;
        case EMPLOYMENT:
            jpaJaxbEmploymentAdapter.toOrgAffiliationRelationEntity((Employment) affiliation, entity);
            break;
        case INVITED_POSITION:
            jpaJaxbInvitedPositionAdapter.toOrgAffiliationRelationEntity((InvitedPosition) affiliation, entity);
            break;
        case MEMBERSHIP:
            jpaJaxbMembershipAdapter.toOrgAffiliationRelationEntity((Membership) affiliation, entity);
            break;
        case QUALIFICATION:
            jpaJaxbQualificationAdapter.toOrgAffiliationRelationEntity((Qualification) affiliation, entity);
            break;
        case SERVICE:
            jpaJaxbServiceAdapter.toOrgAffiliationRelationEntity((Service) affiliation, entity);
            break;
    }
    entity.setVisibility(originalVisibility);
    // Be sure it doesn't overwrite the source
    entity.setSourceId(existingSourceId);
    entity.setClientSourceId(existingClientSourceId);
    // Updates the give organization with the latest organization from
    // database, or, create a new one
    OrgEntity updatedOrganization = orgManager.getOrgEntity(affiliation);
    entity.setOrg(updatedOrganization);
    entity.setAffiliationType(type);
    entity = orgAffiliationRelationDao.merge(entity);
    orgAffiliationRelationDao.flush();
    Affiliation result = null;
    switch(type) {
        case DISTINCTION:
            notificationManager.sendAmendEmail(orcid, AmendedSection.DISTINCTION, createItemList(entity));
            result = jpaJaxbDistinctionAdapter.toDistinction(entity);
            break;
        case EDUCATION:
            notificationManager.sendAmendEmail(orcid, AmendedSection.EDUCATION, createItemList(entity));
            result = jpaJaxbEducationAdapter.toEducation(entity);
            break;
        case EMPLOYMENT:
            notificationManager.sendAmendEmail(orcid, AmendedSection.EMPLOYMENT, createItemList(entity));
            result = jpaJaxbEmploymentAdapter.toEmployment(entity);
            break;
        case INVITED_POSITION:
            notificationManager.sendAmendEmail(orcid, AmendedSection.INVITED_POSITION, createItemList(entity));
            result = jpaJaxbInvitedPositionAdapter.toInvitedPosition(entity);
            break;
        case MEMBERSHIP:
            notificationManager.sendAmendEmail(orcid, AmendedSection.MEMBERSHIP, createItemList(entity));
            result = jpaJaxbMembershipAdapter.toMembership(entity);
            break;
        case QUALIFICATION:
            notificationManager.sendAmendEmail(orcid, AmendedSection.QUALIFICATION, createItemList(entity));
            result = jpaJaxbQualificationAdapter.toQualification(entity);
            break;
        case SERVICE:
            notificationManager.sendAmendEmail(orcid, AmendedSection.SERVICE, createItemList(entity));
            result = jpaJaxbServiceAdapter.toService(entity);
            break;
    }
    return result;
}

Example 9 with Organization

use of org.orcid.jaxb.model.v3.dev1.common.Organization in project ORCID-Source by ORCID.

the class PeerReviewManagerImpl method createPeerReview.

@Override
public PeerReview createPeerReview(String orcid, PeerReview peerReview, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    // If request comes from the API, perform the validations
    if (isApiRequest) {
        // Validate it have at least one ext id
        activityValidator.validatePeerReview(peerReview, sourceEntity, true, isApiRequest, null);
        List<PeerReviewEntity> peerReviews = peerReviewDao.getByUser(orcid, getLastModified(orcid));
        // duplicates
        if (!sourceEntity.getSourceId().equals(orcid)) {
            if (peerReviews != null) {
                for (PeerReviewEntity entity : peerReviews) {
                    PeerReview existing = jpaJaxbPeerReviewAdapter.toPeerReview(entity);
                    activityValidator.checkExternalIdentifiersForDuplicates(peerReview.getExternalIdentifiers(), existing.getExternalIdentifiers(), existing.getSource(), sourceEntity);
                }
            }
        } else {
            // check vocab of external identifiers
            externalIDValidator.validateWorkOrPeerReview(peerReview.getExternalIdentifiers());
            externalIDValidator.validateWorkOrPeerReview(peerReview.getSubjectExternalIdentifier());
        }
        validateGroupId(peerReview);
    }
    PeerReviewEntity entity = jpaJaxbPeerReviewAdapter.toPeerReviewEntity(peerReview);
    // Updates the give organization with the latest organization from
    // database
    OrgEntity updatedOrganization = orgManager.getOrgEntity(peerReview);
    entity.setOrg(updatedOrganization);
    // Set the source
    if (sourceEntity.getSourceProfile() != null) {
        entity.setSourceId(sourceEntity.getSourceProfile().getId());
    }
    if (sourceEntity.getSourceClient() != null) {
        entity.setClientSourceId(sourceEntity.getSourceClient().getId());
    }
    ProfileEntity profile = profileEntityCacheManager.retrieve(orcid);
    entity.setProfile(profile);
    setIncomingPrivacy(entity, profile);
    DisplayIndexCalculatorHelper.setDisplayIndexOnNewEntity(entity, isApiRequest);
    peerReviewDao.persist(entity);
    peerReviewDao.flush();
    notificationManager.sendAmendEmail(orcid, AmendedSection.PEER_REVIEW, createItemList(entity));
    return jpaJaxbPeerReviewAdapter.toPeerReview(entity);
}

Example 10 with Organization

use of org.orcid.jaxb.model.v3.dev1.common.Organization in project ORCID-Source by ORCID.

the class FundingForm method valueOf.

public static FundingForm valueOf(Funding funding) {
    FundingForm result = new FundingForm();
    result.setDateSortString(PojoUtil.createDateSortString(funding.getStartDate(), funding.getEndDate()));
    if (funding.getPutCode() != null)
        result.setPutCode(Text.valueOf(funding.getPutCode()));
    if (funding.getAmount() != null) {
        if (StringUtils.isNotEmpty(funding.getAmount().getContent())) {
            String cleanNumber = funding.getAmount().getContent().trim();
            result.setAmount(Text.valueOf(cleanNumber));
        }
        if (funding.getAmount().getCurrencyCode() != null)
            result.setCurrencyCode(Text.valueOf(funding.getAmount().getCurrencyCode()));
        else
            result.setCurrencyCode(new Text());
    } else {
        result.setAmount(new Text());
        result.setCurrencyCode(new Text());
    }
    if (StringUtils.isNotEmpty(funding.getDescription()))
        result.setDescription(Text.valueOf(funding.getDescription()));
    else
        result.setDescription(new Text());
    if (funding.getStartDate() != null)
        result.setStartDate(Date.valueOf(funding.getStartDate()));
    if (funding.getEndDate() != null)
        result.setEndDate(Date.valueOf(funding.getEndDate()));
    if (funding.getType() != null)
        result.setFundingType(Text.valueOf(funding.getType().value()));
    else
        result.setFundingType(new Text());
    if (funding.getOrganizationDefinedType() != null) {
        OrgDefinedFundingSubType OrgDefinedFundingSubType = new OrgDefinedFundingSubType();
        OrgDefinedFundingSubType.setSubtype(Text.valueOf(funding.getOrganizationDefinedType().getContent()));
        OrgDefinedFundingSubType.setAlreadyIndexed(false);
        result.setOrganizationDefinedFundingSubType(OrgDefinedFundingSubType);
    }
    Source source = funding.getSource();
    if (source != null) {
        result.setSource(source.retrieveSourcePath());
        if (source.getSourceName() != null) {
            result.setSourceName(source.getSourceName().getContent());
        }
    }
    if (funding.getTitle() != null) {
        FundingTitleForm fundingTitle = new FundingTitleForm();
        if (funding.getTitle().getTitle() != null)
            fundingTitle.setTitle(Text.valueOf(funding.getTitle().getTitle().getContent()));
        else
            fundingTitle.setTitle(new Text());
        if (funding.getTitle().getTranslatedTitle() != null) {
            TranslatedTitleForm translatedTitle = new TranslatedTitleForm();
            translatedTitle.setContent(funding.getTitle().getTranslatedTitle().getContent());
            translatedTitle.setLanguageCode(funding.getTitle().getTranslatedTitle().getLanguageCode());
            fundingTitle.setTranslatedTitle(translatedTitle);
        }
        result.setFundingTitle(fundingTitle);
    } else {
        FundingTitleForm fundingTitle = new FundingTitleForm();
        fundingTitle.setTitle(new Text());
        result.setFundingTitle(fundingTitle);
    }
    if (funding.getUrl() != null)
        result.setUrl(Text.valueOf(funding.getUrl().getValue()));
    else
        result.setUrl(new Text());
    if (funding.getVisibility() != null)
        result.setVisibility(Visibility.valueOf(funding.getVisibility()));
    // Set the disambiguated organization
    Organization organization = funding.getOrganization();
    result.setFundingName(Text.valueOf(organization.getName()));
    DisambiguatedOrganization disambiguatedOrganization = organization.getDisambiguatedOrganization();
    if (disambiguatedOrganization != null) {
        if (StringUtils.isNotEmpty(disambiguatedOrganization.getDisambiguatedOrganizationIdentifier())) {
            result.setDisambiguatedFundingSourceId(Text.valueOf(disambiguatedOrganization.getDisambiguatedOrganizationIdentifier()));
            result.setDisambiguationSource(Text.valueOf(disambiguatedOrganization.getDisambiguationSource()));
        }
    }
    OrganizationAddress organizationAddress = organization.getAddress();
    if (organizationAddress != null) {
        if (!PojoUtil.isEmpty(organizationAddress.getCity()))
            result.setCity(Text.valueOf(organizationAddress.getCity()));
        else
            result.setCity(new Text());
        if (!PojoUtil.isEmpty(organizationAddress.getRegion()))
            result.setRegion(Text.valueOf(organizationAddress.getRegion()));
        else
            result.setRegion(new Text());
        if (organizationAddress.getCountry() != null)
            result.setCountry(Text.valueOf(organizationAddress.getCountry().value()));
        else
            result.setCountry(new Text());
    } else {
        result.setCountry(new Text());
        result.setCity(new Text());
        result.setRegion(new Text());
    }
    // Set contributors
    if (funding.getContributors() != null) {
        List<Contributor> contributors = new ArrayList<Contributor>();
        for (FundingContributor fContributor : funding.getContributors().getContributor()) {
            Contributor contributor = Contributor.valueOf(fContributor);
            contributors.add(contributor);
        }
        result.setContributors(contributors);
    }
    List<FundingExternalIdentifierForm> externalIdentifiersList = new ArrayList<FundingExternalIdentifierForm>();
    // Set external identifiers
    if (funding.getExternalIdentifiers() != null) {
        for (ExternalID fExternalIdentifier : funding.getExternalIdentifiers().getExternalIdentifier()) {
            FundingExternalIdentifierForm fundingExternalIdentifierForm = FundingExternalIdentifierForm.valueOf(fExternalIdentifier);
            externalIdentifiersList.add(fundingExternalIdentifierForm);
        }
    }
    result.setExternalIdentifiers(externalIdentifiersList);
    result.setCreatedDate(Date.valueOf(funding.getCreatedDate()));
    result.setLastModified(Date.valueOf(funding.getLastModifiedDate()));
    return result;
}