Examples with Affiliation org.orcid.jaxb.model.v3.dev1.record.Affiliation used on opensource projects

Example 1 with Affiliation

use of org.orcid.jaxb.model.v3.dev1.record.Affiliation in project ORCID-Source by ORCID.

the class OrcidInfo method publicPreview.

@RequestMapping(value = { "/{orcid:(?:\\d{4}-){3,}\\d{3}[\\dX]}", "/{orcid:(?:\\d{4}-){3,}\\d{3}[\\dX]}/print" })
public ModelAndView publicPreview(HttpServletRequest request, HttpServletResponse response, @RequestParam(value = "page", defaultValue = "1") int pageNo, @RequestParam(value = "v", defaultValue = "0") int v, @RequestParam(value = "maxResults", defaultValue = "15") int maxResults, @PathVariable("orcid") String orcid) {
    ProfileEntity profile = null;
    try {
        profile = profileEntityCacheManager.retrieve(orcid);
    } catch (Exception e) {
        response.setStatus(HttpStatus.NOT_FOUND.value());
        return new ModelAndView("error-404");
    }
    try {
        // Check if the profile is deprecated, non claimed or locked
        orcidSecurityManager.checkProfile(orcid);
    } catch (OrcidDeprecatedException | OrcidNotClaimedException | LockedException | DeactivatedException e) {
        ModelAndView mav = new ModelAndView("public_profile_unavailable");
        mav.addObject("effectiveUserOrcid", orcid);
        String displayName = "";
        if (e instanceof OrcidDeprecatedException) {
            PersonalDetails publicPersonalDetails = personalDetailsManager.getPublicPersonalDetails(orcid);
            if (publicPersonalDetails.getName() != null) {
                Name name = publicPersonalDetails.getName();
                if (name.getVisibility().equals(Visibility.PUBLIC)) {
                    if (name.getCreditName() != null && !PojoUtil.isEmpty(name.getCreditName().getContent())) {
                        displayName = name.getCreditName().getContent();
                    } else {
                        if (name.getGivenNames() != null && !PojoUtil.isEmpty(name.getGivenNames().getContent())) {
                            displayName = name.getGivenNames().getContent() + " ";
                        }
                        if (name.getFamilyName() != null && !PojoUtil.isEmpty(name.getFamilyName().getContent())) {
                            displayName += name.getFamilyName().getContent();
                        }
                    }
                }
            }
            mav.addObject("deprecated", true);
            mav.addObject("primaryRecord", profile.getPrimaryRecord().getId());
        } else if (e instanceof OrcidNotClaimedException) {
            displayName = localeManager.resolveMessage("orcid.reserved_for_claim");
        } else if (e instanceof LockedException) {
            mav.addObject("locked", true);
            mav.addObject("isPublicProfile", true);
            displayName = localeManager.resolveMessage("public_profile.deactivated.given_names") + " " + localeManager.resolveMessage("public_profile.deactivated.family_name");
        } else {
            mav.addObject("deactivated", true);
            displayName = localeManager.resolveMessage("public_profile.deactivated.given_names") + " " + localeManager.resolveMessage("public_profile.deactivated.family_name");
        }
        if (!PojoUtil.isEmpty(displayName)) {
            mav.addObject("title", getMessage("layout.public-layout.title", displayName, orcid));
            mav.addObject("displayName", displayName);
        }
        return mav;
    }
    long lastModifiedTime = getLastModifiedTime(orcid);
    ModelAndView mav = null;
    if (request.getRequestURI().contains("/print")) {
        mav = new ModelAndView("print_public_record");
        mav.addObject("hideUserVoiceScript", true);
    } else {
        mav = new ModelAndView("public_profile_v3");
    }
    mav.addObject("isPublicProfile", true);
    mav.addObject("effectiveUserOrcid", orcid);
    mav.addObject("lastModifiedTime", lastModifiedTime);
    boolean isProfileEmtpy = true;
    PersonalDetails publicPersonalDetails = personalDetailsManager.getPublicPersonalDetails(orcid);
    // Fill personal details
    if (publicPersonalDetails != null) {
        // Get display name
        String displayName = "";
        if (publicPersonalDetails.getName() != null) {
            Name name = publicPersonalDetails.getName();
            if (name.getVisibility().equals(Visibility.PUBLIC)) {
                if (name.getCreditName() != null && !PojoUtil.isEmpty(name.getCreditName().getContent())) {
                    displayName = name.getCreditName().getContent();
                } else {
                    if (name.getGivenNames() != null && !PojoUtil.isEmpty(name.getGivenNames().getContent())) {
                        displayName = name.getGivenNames().getContent() + " ";
                    }
                    if (name.getFamilyName() != null && !PojoUtil.isEmpty(name.getFamilyName().getContent())) {
                        displayName += name.getFamilyName().getContent();
                    }
                }
            }
        }
        if (!PojoUtil.isEmpty(displayName)) {
            // <Published Name> (<ORCID iD>) - ORCID | Connecting Research
            // and Researchers
            mav.addObject("title", getMessage("layout.public-layout.title", displayName.trim(), orcid));
            mav.addObject("displayName", displayName);
        }
        // Get biography
        if (publicPersonalDetails.getBiography() != null) {
            Biography bio = publicPersonalDetails.getBiography();
            if (Visibility.PUBLIC.equals(bio.getVisibility()) && !PojoUtil.isEmpty(bio.getContent())) {
                isProfileEmtpy = false;
                mav.addObject("biography", bio);
            }
        }
        // Fill other names
        OtherNames publicOtherNames = publicPersonalDetails.getOtherNames();
        if (publicOtherNames != null && publicOtherNames.getOtherNames() != null) {
            Iterator<OtherName> it = publicOtherNames.getOtherNames().iterator();
            while (it.hasNext()) {
                OtherName otherName = it.next();
                if (!Visibility.PUBLIC.equals(otherName.getVisibility())) {
                    it.remove();
                }
            }
        }
        Map<String, List<OtherName>> groupedOtherNames = groupOtherNames(publicOtherNames);
        mav.addObject("publicGroupedOtherNames", groupedOtherNames);
    }
    // Fill biography elements
    // Fill country
    Addresses publicAddresses = addressManager.getPublicAddresses(orcid);
    Map<String, String> countryNames = new HashMap<String, String>();
    if (publicAddresses != null && publicAddresses.getAddress() != null) {
        Address publicAddress = null;
        // The primary address will be the one with the lowest display index
        for (Address address : publicAddresses.getAddress()) {
            countryNames.put(address.getCountry().getValue().value(), getcountryName(address.getCountry().getValue().value()));
            if (publicAddress == null) {
                publicAddress = address;
            }
        }
        if (publicAddress != null) {
            mav.addObject("publicAddress", publicAddress);
            mav.addObject("countryNames", countryNames);
            Map<String, List<Address>> groupedAddresses = groupAddresses(publicAddresses);
            mav.addObject("publicGroupedAddresses", groupedAddresses);
        }
    }
    // Fill keywords
    Keywords publicKeywords = keywordManager.getPublicKeywords(orcid);
    Map<String, List<Keyword>> groupedKeywords = groupKeywords(publicKeywords);
    mav.addObject("publicGroupedKeywords", groupedKeywords);
    // Fill researcher urls
    ResearcherUrls publicResearcherUrls = researcherUrlManager.getPublicResearcherUrls(orcid);
    Map<String, List<ResearcherUrl>> groupedResearcherUrls = groupResearcherUrls(publicResearcherUrls);
    mav.addObject("publicGroupedResearcherUrls", groupedResearcherUrls);
    // Fill emails
    Emails publicEmails = emailManager.getPublicEmails(orcid);
    Map<String, List<Email>> groupedEmails = groupEmails(publicEmails);
    mav.addObject("publicGroupedEmails", groupedEmails);
    // Fill external identifiers
    PersonExternalIdentifiers publicPersonExternalIdentifiers = externalIdentifierManager.getPublicExternalIdentifiers(orcid);
    Map<String, List<PersonExternalIdentifier>> groupedExternalIdentifiers = groupExternalIdentifiers(publicPersonExternalIdentifiers);
    mav.addObject("publicGroupedPersonExternalIdentifiers", groupedExternalIdentifiers);
    LinkedHashMap<Long, Affiliation> affiliationMap = new LinkedHashMap<>();
    LinkedHashMap<Long, Funding> fundingMap = new LinkedHashMap<>();
    LinkedHashMap<Long, PeerReview> peerReviewMap = new LinkedHashMap<>();
    if (worksPaginator.getPublicWorksCount(orcid) > 0) {
        isProfileEmtpy = false;
    }
    affiliationMap = activityManager.affiliationMap(orcid);
    if (affiliationMap.size() > 0) {
        isProfileEmtpy = false;
    } else {
        mav.addObject("affiliationsEmpty", true);
    }
    fundingMap = activityManager.fundingMap(orcid);
    if (fundingMap.size() > 0)
        isProfileEmtpy = false;
    else {
        mav.addObject("fundingEmpty", true);
    }
    peerReviewMap = activityManager.pubPeerReviewsMap(orcid);
    if (peerReviewMap.size() > 0) {
        isProfileEmtpy = false;
    } else {
        mav.addObject("peerReviewsEmpty", true);
    }
    ObjectMapper mapper = new ObjectMapper();
    try {
        String affiliationIdsJson = mapper.writeValueAsString(affiliationMap.keySet());
        String fundingIdsJson = mapper.writeValueAsString(fundingMap.keySet());
        String peerReviewIdsJson = mapper.writeValueAsString(peerReviewMap.keySet());
        mav.addObject("affiliationIdsJson", StringEscapeUtils.escapeEcmaScript(affiliationIdsJson));
        mav.addObject("fundingIdsJson", StringEscapeUtils.escapeEcmaScript(fundingIdsJson));
        mav.addObject("peerReviewIdsJson", StringEscapeUtils.escapeEcmaScript(peerReviewIdsJson));
        mav.addObject("isProfileEmpty", isProfileEmtpy);
    } catch (JsonGenerationException e) {
        e.printStackTrace();
    } catch (JsonMappingException e) {
        e.printStackTrace();
    } catch (IOException e) {
        e.printStackTrace();
    }
    if (!profile.isReviewed()) {
        if (isProfileValidForIndex(profile)) {
            int countTokens = orcidOauth2TokenService.findCountByUserName(orcid, lastModifiedTime);
            if (!profile.isAccountNonLocked() || countTokens == 0 || (!CreationMethod.WEBSITE.value().equals(profile.getCreationMethod()) && !CreationMethod.DIRECT.value().equals(profile.getCreationMethod()))) {
                mav.addObject("noIndex", true);
            }
        } else {
            mav.addObject("noIndex", true);
        }
    }
    return mav;
}

Example 2 with Affiliation

use of org.orcid.jaxb.model.v3.dev1.record.Affiliation in project ORCID-Source by ORCID.

the class AffiliationsController method addAffiliation.

/**
 * Adds a new affiliations
 *
 * @param affiliationForm
 */
private void addAffiliation(AffiliationForm affiliationForm) {
    Affiliation affiliation = affiliationForm.toAffiliation();
    if (affiliation instanceof Distinction) {
        affiliation = affiliationsManager.createDistinctionAffiliation(getCurrentUserOrcid(), (Distinction) affiliation, false);
    } else if (affiliation instanceof Education) {
        affiliation = affiliationsManager.createEducationAffiliation(getCurrentUserOrcid(), (Education) affiliation, false);
    } else if (affiliation instanceof Employment) {
        affiliation = affiliationsManager.createEmploymentAffiliation(getCurrentUserOrcid(), (Employment) affiliation, false);
    } else if (affiliation instanceof InvitedPosition) {
        affiliation = affiliationsManager.createInvitedPositionAffiliation(getCurrentUserOrcid(), (InvitedPosition) affiliation, false);
    } else if (affiliation instanceof Membership) {
        affiliation = affiliationsManager.createMembershipAffiliation(getCurrentUserOrcid(), (Membership) affiliation, false);
    } else if (affiliation instanceof Qualification) {
        affiliation = affiliationsManager.createQualificationAffiliation(getCurrentUserOrcid(), (Qualification) affiliation, false);
    } else if (affiliation instanceof Service) {
        affiliation = affiliationsManager.createServiceAffiliation(getCurrentUserOrcid(), (Service) affiliation, false);
    } else {
        throw new IllegalArgumentException("Invalid affiliation type: " + affiliation.getClass().getName());
    }
    affiliationForm.setPutCode(Text.valueOf(affiliation.getPutCode()));
}

Example 3 with Affiliation

use of org.orcid.jaxb.model.v3.dev1.record.Affiliation in project ORCID-Source by ORCID.

the class AffiliationForm method toAffiliation.

public Affiliation toAffiliation() {
    Affiliation affiliation = null;
    if (AffiliationType.DISTINCTION.value().equals(affiliationType.getValue())) {
        affiliation = new Distinction();
    } else if (AffiliationType.EDUCATION.value().equals(affiliationType.getValue())) {
        affiliation = new Education();
    } else if (AffiliationType.EMPLOYMENT.value().equals(affiliationType.getValue())) {
        affiliation = new Employment();
    } else if (AffiliationType.INVITED_POSITION.value().equals(affiliationType.getValue())) {
        affiliation = new InvitedPosition();
    } else if (AffiliationType.MEMBERSHIP.value().equals(affiliationType.getValue())) {
        affiliation = new Membership();
    } else if (AffiliationType.QUALIFICATION.value().equals(affiliationType.getValue())) {
        affiliation = new Qualification();
    } else if (AffiliationType.SERVICE.value().equals(affiliationType.getValue())) {
        affiliation = new Service();
    }
    if (!PojoUtil.isEmpty(putCode)) {
        affiliation.setPutCode(Long.valueOf(putCode.getValue()));
    }
    if (visibility != null && visibility.getVisibility() != null) {
        affiliation.setVisibility(org.orcid.jaxb.model.v3.dev1.common.Visibility.fromValue(visibility.getVisibility().value()));
    }
    Organization organization = new Organization();
    affiliation.setOrganization(organization);
    organization.setName(affiliationName.getValue());
    OrganizationAddress organizationAddress = new OrganizationAddress();
    organization.setAddress(organizationAddress);
    organizationAddress.setCity(city.getValue());
    if (!PojoUtil.isEmpty(region)) {
        organizationAddress.setRegion(region.getValue());
    }
    if (!PojoUtil.isEmpty(disambiguatedAffiliationSourceId)) {
        organization.setDisambiguatedOrganization(new DisambiguatedOrganization());
        organization.getDisambiguatedOrganization().setDisambiguatedOrganizationIdentifier(disambiguatedAffiliationSourceId.getValue());
        organization.getDisambiguatedOrganization().setDisambiguationSource(disambiguationSource.getValue());
    }
    organizationAddress.setCountry(Iso3166Country.fromValue(country.getValue()));
    if (!PojoUtil.isEmpty(roleTitle)) {
        affiliation.setRoleTitle(roleTitle.getValue());
    }
    if (!PojoUtil.isEmpty(departmentName)) {
        affiliation.setDepartmentName(departmentName.getValue());
    }
    if (!PojoUtil.isEmpty(startDate)) {
        affiliation.setStartDate(startDate.toV3FuzzyDate());
    }
    if (!PojoUtil.isEmpty(endDate)) {
        affiliation.setEndDate(endDate.toV3FuzzyDate());
    }
    if (!PojoUtil.isEmpty(url)) {
        affiliation.setUrl(new Url(url.getValue()));
    }
    if (affiliationExternalIdentifiers != null) {
        ExternalIDs externalIDs = new ExternalIDs();
        for (AffiliationExternalIdentifier affiliationExternalIdentifier : affiliationExternalIdentifiers) {
            externalIDs.getExternalIdentifier().add(affiliationExternalIdentifier.toExternalID());
        }
        affiliation.setExternalIDs(externalIDs);
    }
    return affiliation;
}

Example 4 with Affiliation

use of org.orcid.jaxb.model.v3.dev1.record.Affiliation in project ORCID-Source by ORCID.

the class AffiliationForm method valueOf.

public static AffiliationForm valueOf(Affiliation affiliation) {
    AffiliationForm form = new AffiliationForm();
    if (affiliation instanceof Distinction) {
        form.setAffiliationType(Text.valueOf(AffiliationType.DISTINCTION.value()));
    } else if (affiliation instanceof Education) {
        form.setAffiliationType(Text.valueOf(AffiliationType.EDUCATION.value()));
    } else if (affiliation instanceof Employment) {
        form.setAffiliationType(Text.valueOf(AffiliationType.EMPLOYMENT.value()));
    } else if (affiliation instanceof InvitedPosition) {
        form.setAffiliationType(Text.valueOf(AffiliationType.INVITED_POSITION.value()));
    } else if (affiliation instanceof Membership) {
        form.setAffiliationType(Text.valueOf(AffiliationType.MEMBERSHIP.value()));
    } else if (affiliation instanceof Qualification) {
        form.setAffiliationType(Text.valueOf(AffiliationType.QUALIFICATION.value()));
    } else if (affiliation instanceof Service) {
        form.setAffiliationType(Text.valueOf(AffiliationType.SERVICE.value()));
    }
    form.setPutCode(Text.valueOf(affiliation.getPutCode()));
    form.setVisibility(Visibility.valueOf(affiliation.getVisibility()));
    Organization organization = affiliation.getOrganization();
    form.setDateSortString(PojoUtil.createDateSortString(affiliation));
    form.setAffiliationName(Text.valueOf(organization.getName()));
    OrganizationAddress address = organization.getAddress();
    form.setCity(Text.valueOf(address.getCity()));
    if (organization.getDisambiguatedOrganization() != null) {
        if (organization.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier() != null) {
            form.setDisambiguatedAffiliationSourceId(Text.valueOf(organization.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier()));
            form.setDisambiguationSource(Text.valueOf(organization.getDisambiguatedOrganization().getDisambiguationSource()));
            form.setOrgDisambiguatedId(Text.valueOf(String.valueOf(organization.getDisambiguatedOrganization().getId())));
        }
    }
    if (address.getRegion() != null) {
        form.setRegion(Text.valueOf(address.getRegion()));
    } else {
        form.setRegion(new Text());
    }
    if (address.getCountry() != null) {
        form.setCountry(Text.valueOf(address.getCountry().value()));
    } else {
        form.setCountry(new Text());
    }
    if (affiliation.getDepartmentName() != null) {
        form.setDepartmentName(Text.valueOf(affiliation.getDepartmentName()));
    } else {
        form.setDepartmentName(new Text());
    }
    if (affiliation.getRoleTitle() != null) {
        form.setRoleTitle(Text.valueOf(affiliation.getRoleTitle()));
    } else {
        form.setRoleTitle(new Text());
    }
    if (affiliation.getStartDate() != null) {
        form.setStartDate(Date.valueOf(affiliation.getStartDate()));
    }
    if (affiliation.getEndDate() != null) {
        form.setEndDate(Date.valueOf(affiliation.getEndDate()));
    }
    Source source = affiliation.getSource();
    if (source != null) {
        form.setSource(source.retrieveSourcePath());
        if (source.getSourceName() != null) {
            form.setSourceName(source.getSourceName().getContent());
        }
    }
    if (affiliation.getUrl() != null) {
        form.setUrl(Text.valueOf(affiliation.getUrl().getValue()));
    } else {
        form.setUrl(new Text());
    }
    if (affiliation.getExternalIDs() != null) {
        List<AffiliationExternalIdentifier> affiliationExternalIdentifiers = new ArrayList<>();
        for (ExternalID externalID : affiliation.getExternalIDs().getExternalIdentifier()) {
            affiliationExternalIdentifiers.add(AffiliationExternalIdentifier.valueOf(externalID));
        }
        form.setAffiliationExternalIdentifiers(affiliationExternalIdentifiers);
    }
    form.setCreatedDate(Date.valueOf(affiliation.getCreatedDate()));
    form.setLastModified(Date.valueOf(affiliation.getLastModifiedDate()));
    return form;
}

Example 5 with Affiliation

use of org.orcid.jaxb.model.v3.dev1.record.Affiliation in project ORCID-Source by ORCID.

the class OrcidInfo method getAffiliationsJson.

@RequestMapping(value = "/{orcid:(?:\\d{4}-){3,}\\d{3}[\\dX]}/affiliations.json")
@ResponseBody
public List<AffiliationForm> getAffiliationsJson(HttpServletRequest request, @PathVariable("orcid") String orcid, @RequestParam(value = "affiliationIds") String workIdsStr) {
    List<AffiliationForm> affs = new ArrayList<AffiliationForm>();
    Map<Long, Affiliation> affMap = activityManager.affiliationMap(orcid);
    String[] affIds = workIdsStr.split(",");
    for (String id : affIds) {
        Affiliation aff = affMap.get(Long.valueOf(id));
        validateVisibility(aff.getVisibility());
        AffiliationForm form = AffiliationForm.valueOf(aff);
        form.setCountryForDisplay(getMessage(buildInternationalizationKey(CountryIsoEntity.class, aff.getOrganization().getAddress().getCountry().name())));
        if (form.getOrgDisambiguatedId() != null) {
            OrgDisambiguated orgDisambiguated = orgDisambiguatedManager.findInDB(Long.parseLong(form.getOrgDisambiguatedId().getValue()));
            form.setOrgDisambiguatedName(orgDisambiguated.getValue());
            form.setOrgDisambiguatedUrl(orgDisambiguated.getUrl());
            form.setOrgDisambiguatedCity(orgDisambiguated.getCity());
            form.setOrgDisambiguatedRegion(orgDisambiguated.getRegion());
            form.setOrgDisambiguatedCountry(orgDisambiguated.getCountry());
            if (orgDisambiguated.getOrgDisambiguatedExternalIdentifiers() != null) {
                form.setOrgDisambiguatedExternalIdentifiers(orgDisambiguated.getOrgDisambiguatedExternalIdentifiers());
            }
        }
        affs.add(form);
    }
    return affs;
}