Examples with ExternalID org.orcid.jaxb.model.v3.dev1.record.ExternalID used on opensource projects

Example 71 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class MemberV3ApiServiceDelegator_ServicesTest method testUpdateServiceDuplicateExternalIDs.

@Test(expected = OrcidDuplicatedActivityException.class)
public void testUpdateServiceDuplicateExternalIDs() {
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED, ScopePathType.ACTIVITIES_UPDATE);
    ExternalID e1 = new ExternalID();
    e1.setRelationship(Relationship.SELF);
    e1.setType("erm");
    e1.setUrl(new Url("https://orcid.org"));
    e1.setValue("err");
    ExternalID e2 = new ExternalID();
    e2.setRelationship(Relationship.SELF);
    e2.setType("err");
    e2.setUrl(new Url("http://bbc.co.uk"));
    e2.setValue("erm");
    ExternalIDs externalIDs = new ExternalIDs();
    externalIDs.getExternalIdentifier().add(e1);
    externalIDs.getExternalIdentifier().add(e2);
    Service service = (Service) Utils.getAffiliation(AffiliationType.SERVICE);
    service.setExternalIDs(externalIDs);
    Response response = serviceDelegator.createService(ORCID, service);
    assertNotNull(response);
    assertEquals(HttpStatus.SC_CREATED, response.getStatus());
    Map<?, ?> map = response.getMetadata();
    assertNotNull(map);
    assertTrue(map.containsKey("Location"));
    List<?> resultWithPutCode = (List<?>) map.get("Location");
    Long putCode1 = Long.valueOf(String.valueOf(resultWithPutCode.get(0)));
    Service another = (Service) Utils.getAffiliation(AffiliationType.SERVICE);
    response = serviceDelegator.createService(ORCID, another);
    map = response.getMetadata();
    assertNotNull(map);
    assertTrue(map.containsKey("Location"));
    resultWithPutCode = (List<?>) map.get("Location");
    Long putCode2 = Long.valueOf(String.valueOf(resultWithPutCode.get(0)));
    response = serviceDelegator.viewService(ORCID, putCode2);
    another = (Service) response.getEntity();
    another.setExternalIDs(externalIDs);
    try {
        serviceDelegator.updateService(ORCID, putCode2, another);
    } finally {
        serviceDelegator.deleteAffiliation(ORCID, putCode1);
        serviceDelegator.deleteAffiliation(ORCID, putCode2);
    }
}

Example 72 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class MemberV3ApiServiceDelegator_WorksTest method testCreateBulkWorksWithBlankTitles.

@Test
public void testCreateBulkWorksWithBlankTitles() {
    RequestAttributes previousAttrs = RequestContextHolder.getRequestAttributes();
    RequestAttributes attrs = new ServletRequestAttributes(new MockHttpServletRequest());
    attrs.setAttribute(ApiVersionFilter.API_VERSION_REQUEST_ATTRIBUTE_NAME, "3.0_dev1", RequestAttributes.SCOPE_REQUEST);
    RequestContextHolder.setRequestAttributes(attrs);
    Long time = System.currentTimeMillis();
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED, ScopePathType.ACTIVITIES_UPDATE);
    WorkBulk bulk = new WorkBulk();
    for (int i = 0; i < 5; i++) {
        Work work = new Work();
        WorkTitle title = new WorkTitle();
        title.setTitle(i == 0 ? new Title(" ") : new Title("title " + i));
        work.setWorkTitle(title);
        ExternalIDs extIds = new ExternalIDs();
        ExternalID extId = new ExternalID();
        extId.setRelationship(Relationship.SELF);
        extId.setType("doi");
        extId.setUrl(new Url("http://doi/" + i + "/" + time));
        extId.setValue("doi-" + i + "-" + time);
        extIds.getExternalIdentifier().add(extId);
        work.setWorkExternalIdentifiers(extIds);
        work.setWorkType(WorkType.BOOK);
        bulk.getBulk().add(work);
    }
    Response response = serviceDelegator.createWorks(ORCID, bulk);
    assertNotNull(response);
    assertEquals(Response.Status.OK.getStatusCode(), response.getStatus());
    bulk = (WorkBulk) response.getEntity();
    assertNotNull(bulk);
    assertEquals(5, bulk.getBulk().size());
    for (int i = 0; i < 5; i++) {
        if (i == 0) {
            assertTrue(bulk.getBulk().get(i) instanceof OrcidError);
        } else {
            assertTrue(bulk.getBulk().get(i) instanceof Work);
            serviceDelegator.deleteWork(ORCID, ((Work) bulk.getBulk().get(i)).getPutCode());
        }
    }
    RequestContextHolder.setRequestAttributes(previousAttrs);
}

Example 73 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class MemberV3ApiServiceDelegator_WorksTest method testCreateWorksWithBulkAllOK.

@Test
public void testCreateWorksWithBulkAllOK() {
    RequestAttributes previousAttrs = RequestContextHolder.getRequestAttributes();
    RequestAttributes attrs = new ServletRequestAttributes(new MockHttpServletRequest());
    attrs.setAttribute(ApiVersionFilter.API_VERSION_REQUEST_ATTRIBUTE_NAME, "3.0_dev1", RequestAttributes.SCOPE_REQUEST);
    RequestContextHolder.setRequestAttributes(attrs);
    Long time = System.currentTimeMillis();
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED, ScopePathType.ACTIVITIES_UPDATE);
    WorkBulk bulk = new WorkBulk();
    for (int i = 0; i < 5; i++) {
        Work work = new Work();
        WorkTitle title = new WorkTitle();
        title.setTitle(new Title("Bulk work " + i + " " + time));
        work.setWorkTitle(title);
        ExternalIDs extIds = new ExternalIDs();
        ExternalID extId = new ExternalID();
        extId.setRelationship(Relationship.SELF);
        extId.setType("doi");
        extId.setUrl(new Url("http://doi/" + i + "/" + time));
        extId.setValue("doi-" + i + "-" + time);
        extIds.getExternalIdentifier().add(extId);
        work.setWorkExternalIdentifiers(extIds);
        work.setWorkType(WorkType.BOOK);
        bulk.getBulk().add(work);
    }
    Response response = serviceDelegator.createWorks(ORCID, bulk);
    assertNotNull(response);
    assertEquals(Response.Status.OK.getStatusCode(), response.getStatus());
    bulk = (WorkBulk) response.getEntity();
    assertNotNull(bulk);
    assertEquals(5, bulk.getBulk().size());
    for (int i = 0; i < 5; i++) {
        assertTrue(Work.class.isAssignableFrom(bulk.getBulk().get(i).getClass()));
        Work w = (Work) bulk.getBulk().get(i);
        Utils.verifyLastModified(w.getLastModifiedDate());
        assertNotNull(w.getPutCode());
        assertTrue(0L < w.getPutCode());
        assertEquals("Bulk work " + i + " " + time, w.getWorkTitle().getTitle().getContent());
        assertNotNull(w.getExternalIdentifiers().getExternalIdentifier());
        assertEquals("doi-" + i + "-" + time, w.getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
        Response r = serviceDelegator.viewWork(ORCID, w.getPutCode());
        assertNotNull(r);
        assertEquals(Response.Status.OK.getStatusCode(), r.getStatus());
        assertEquals("Bulk work " + i + " " + time, ((Work) r.getEntity()).getWorkTitle().getTitle().getContent());
        // Delete the work
        r = serviceDelegator.deleteWork(ORCID, w.getPutCode());
        assertNotNull(r);
        assertEquals(Response.Status.NO_CONTENT.getStatusCode(), r.getStatus());
    }
    RequestContextHolder.setRequestAttributes(previousAttrs);
}

Example 74 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class FundingForm method valueOf.

public static FundingForm valueOf(Funding funding) {
    FundingForm result = new FundingForm();
    result.setDateSortString(PojoUtil.createDateSortString(funding.getStartDate(), funding.getEndDate()));
    if (funding.getPutCode() != null)
        result.setPutCode(Text.valueOf(funding.getPutCode()));
    if (funding.getAmount() != null) {
        if (StringUtils.isNotEmpty(funding.getAmount().getContent())) {
            String cleanNumber = funding.getAmount().getContent().trim();
            result.setAmount(Text.valueOf(cleanNumber));
        }
        if (funding.getAmount().getCurrencyCode() != null)
            result.setCurrencyCode(Text.valueOf(funding.getAmount().getCurrencyCode()));
        else
            result.setCurrencyCode(new Text());
    } else {
        result.setAmount(new Text());
        result.setCurrencyCode(new Text());
    }
    if (StringUtils.isNotEmpty(funding.getDescription()))
        result.setDescription(Text.valueOf(funding.getDescription()));
    else
        result.setDescription(new Text());
    if (funding.getStartDate() != null)
        result.setStartDate(Date.valueOf(funding.getStartDate()));
    if (funding.getEndDate() != null)
        result.setEndDate(Date.valueOf(funding.getEndDate()));
    if (funding.getType() != null)
        result.setFundingType(Text.valueOf(funding.getType().value()));
    else
        result.setFundingType(new Text());
    if (funding.getOrganizationDefinedType() != null) {
        OrgDefinedFundingSubType OrgDefinedFundingSubType = new OrgDefinedFundingSubType();
        OrgDefinedFundingSubType.setSubtype(Text.valueOf(funding.getOrganizationDefinedType().getContent()));
        OrgDefinedFundingSubType.setAlreadyIndexed(false);
        result.setOrganizationDefinedFundingSubType(OrgDefinedFundingSubType);
    }
    Source source = funding.getSource();
    if (source != null) {
        result.setSource(source.retrieveSourcePath());
        if (source.getSourceName() != null) {
            result.setSourceName(source.getSourceName().getContent());
        }
    }
    if (funding.getTitle() != null) {
        FundingTitleForm fundingTitle = new FundingTitleForm();
        if (funding.getTitle().getTitle() != null)
            fundingTitle.setTitle(Text.valueOf(funding.getTitle().getTitle().getContent()));
        else
            fundingTitle.setTitle(new Text());
        if (funding.getTitle().getTranslatedTitle() != null) {
            TranslatedTitleForm translatedTitle = new TranslatedTitleForm();
            translatedTitle.setContent(funding.getTitle().getTranslatedTitle().getContent());
            translatedTitle.setLanguageCode(funding.getTitle().getTranslatedTitle().getLanguageCode());
            fundingTitle.setTranslatedTitle(translatedTitle);
        }
        result.setFundingTitle(fundingTitle);
    } else {
        FundingTitleForm fundingTitle = new FundingTitleForm();
        fundingTitle.setTitle(new Text());
        result.setFundingTitle(fundingTitle);
    }
    if (funding.getUrl() != null)
        result.setUrl(Text.valueOf(funding.getUrl().getValue()));
    else
        result.setUrl(new Text());
    if (funding.getVisibility() != null)
        result.setVisibility(Visibility.valueOf(funding.getVisibility()));
    // Set the disambiguated organization
    Organization organization = funding.getOrganization();
    result.setFundingName(Text.valueOf(organization.getName()));
    DisambiguatedOrganization disambiguatedOrganization = organization.getDisambiguatedOrganization();
    if (disambiguatedOrganization != null) {
        if (StringUtils.isNotEmpty(disambiguatedOrganization.getDisambiguatedOrganizationIdentifier())) {
            result.setDisambiguatedFundingSourceId(Text.valueOf(disambiguatedOrganization.getDisambiguatedOrganizationIdentifier()));
            result.setDisambiguationSource(Text.valueOf(disambiguatedOrganization.getDisambiguationSource()));
        }
    }
    OrganizationAddress organizationAddress = organization.getAddress();
    if (organizationAddress != null) {
        if (!PojoUtil.isEmpty(organizationAddress.getCity()))
            result.setCity(Text.valueOf(organizationAddress.getCity()));
        else
            result.setCity(new Text());
        if (!PojoUtil.isEmpty(organizationAddress.getRegion()))
            result.setRegion(Text.valueOf(organizationAddress.getRegion()));
        else
            result.setRegion(new Text());
        if (organizationAddress.getCountry() != null)
            result.setCountry(Text.valueOf(organizationAddress.getCountry().value()));
        else
            result.setCountry(new Text());
    } else {
        result.setCountry(new Text());
        result.setCity(new Text());
        result.setRegion(new Text());
    }
    // Set contributors
    if (funding.getContributors() != null) {
        List<Contributor> contributors = new ArrayList<Contributor>();
        for (FundingContributor fContributor : funding.getContributors().getContributor()) {
            Contributor contributor = Contributor.valueOf(fContributor);
            contributors.add(contributor);
        }
        result.setContributors(contributors);
    }
    List<FundingExternalIdentifierForm> externalIdentifiersList = new ArrayList<FundingExternalIdentifierForm>();
    // Set external identifiers
    if (funding.getExternalIdentifiers() != null) {
        for (ExternalID fExternalIdentifier : funding.getExternalIdentifiers().getExternalIdentifier()) {
            FundingExternalIdentifierForm fundingExternalIdentifierForm = FundingExternalIdentifierForm.valueOf(fExternalIdentifier);
            externalIdentifiersList.add(fundingExternalIdentifierForm);
        }
    }
    result.setExternalIdentifiers(externalIdentifiersList);
    result.setCreatedDate(Date.valueOf(funding.getCreatedDate()));
    result.setLastModified(Date.valueOf(funding.getLastModifiedDate()));
    return result;
}

Example 75 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class WorkGroup method valueOf.

public static WorkGroup valueOf(org.orcid.jaxb.model.v3.dev1.record.summary.WorkGroup workGroup, int id, String orcid) {
    WorkGroup group = new WorkGroup();
    group.setGroupId(id);
    group.setWorks(new ArrayList<>());
    WorkType workType = null;
    Long maxDisplayIndex = null;
    for (WorkSummary workSummary : workGroup.getWorkSummary()) {
        WorkForm workForm = getWorkForm(workSummary);
        group.getWorks().add(workForm);
        Long displayIndex = Long.parseLong(workSummary.getDisplayIndex());
        if (maxDisplayIndex == null || displayIndex > maxDisplayIndex) {
            maxDisplayIndex = displayIndex;
            group.setActivePutCode(workSummary.getPutCode());
            group.setActiveVisibility(workSummary.getVisibility().name());
            group.setDefaultWork(workForm);
        }
        if (workSummary.getSource().retrieveSourcePath().equals(orcid)) {
            group.setUserVersionPresent(true);
        }
        workType = workSummary.getType();
    }
    if (workGroup.getIdentifiers() != null) {
        List<WorkExternalIdentifier> workExternalIdentifiersList = new ArrayList<WorkExternalIdentifier>();
        for (ExternalID extId : workGroup.getIdentifiers().getExternalIdentifier()) {
            if (extId.getRelationship() == null) {
                if (org.orcid.jaxb.model.message.WorkExternalIdentifierType.ISSN.equals(extId.getType())) {
                    if (WorkType.BOOK.equals(workType)) {
                        extId.setRelationship(Relationship.PART_OF);
                    } else {
                        extId.setRelationship(Relationship.SELF);
                    }
                } else if (org.orcid.jaxb.model.message.WorkExternalIdentifierType.ISBN.equals(extId.getType())) {
                    if (WorkType.BOOK_CHAPTER.equals(workType) || WorkType.CONFERENCE_PAPER.equals(workType)) {
                        extId.setRelationship(Relationship.PART_OF);
                    } else {
                        extId.setRelationship(Relationship.SELF);
                    }
                } else {
                    extId.setRelationship(Relationship.SELF);
                }
            }
            workExternalIdentifiersList.add(WorkExternalIdentifier.valueOf(extId));
        }
        group.setWorkExternalIdentifiers(workExternalIdentifiersList);
    }
    return group;
}