Examples with ExternalID org.orcid.jaxb.model.v3.dev1.record.ExternalID used on opensource projects

Example 81 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class ValidateV3_dev1SamplesTest method testUnmarshallWorks.

@Test
public void testUnmarshallWorks() throws JAXBException, SAXException, URISyntaxException {
    Works works = (Works) unmarshallFromPath("/record_3.0_dev1/samples/read_samples/works-3.0_dev1.xml", Works.class, "/record_3.0_dev1/activities-3.0_dev1.xsd");
    assertNotNull(works);
    assertNotNull(works.getLastModifiedDate());
    assertNotNull(works.getLastModifiedDate().getValue());
    assertEquals(3, works.getWorkGroup().size());
    boolean foundWorkWithNoExtIds = false;
    for (WorkGroup group : works.getWorkGroup()) {
        assertNotNull(group.getLastModifiedDate().getValue());
        assertNotNull(group.getIdentifiers().getExternalIdentifier());
        if (group.getIdentifiers().getExternalIdentifier().isEmpty()) {
            WorkSummary summary = group.getWorkSummary().get(0);
            assertEquals("1", summary.getDisplayIndex());
            assertEquals(1, summary.getExternalIdentifiers().getExternalIdentifier().size());
            assertEquals("doi", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getType());
            assertEquals("https://doi.org/123456", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getUrl().getValue());
            assertEquals("123456", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
            assertEquals("/8888-8888-8888-8880/work/3356", summary.getPath());
            assertEquals("03", summary.getPublicationDate().getDay().getValue());
            assertEquals("03", summary.getPublicationDate().getMonth().getValue());
            assertEquals("2017", summary.getPublicationDate().getYear().getValue());
            assertEquals("Work # 0", summary.getTitle().getTitle().getContent());
            assertEquals(WorkType.CONFERENCE_PAPER, summary.getType());
            assertEquals(Visibility.PUBLIC, summary.getVisibility());
            foundWorkWithNoExtIds = true;
        } else {
            assertEquals(1, group.getIdentifiers().getExternalIdentifier().size());
            ExternalID extId = group.getIdentifiers().getExternalIdentifier().get(0);
            if (extId.getType().equals("arxiv")) {
                assertEquals(Relationship.SELF, extId.getRelationship());
                assertEquals("http://arxiv.org/abs/123456", extId.getUrl().getValue());
                assertEquals("123456", extId.getValue());
            } else if (extId.getType().equals("bibcode")) {
                assertEquals(Relationship.SELF, extId.getRelationship());
                assertEquals("http://adsabs.harvard.edu/abs/4567", extId.getUrl().getValue());
                assertEquals("4567", extId.getValue());
            } else {
                fail("Invalid ext id type " + extId.getType());
            }
            assertEquals(1, group.getWorkSummary().size());
            WorkSummary summary = group.getWorkSummary().get(0);
            if (summary.getPutCode().equals(Long.valueOf(3357))) {
                assertEquals("1", summary.getDisplayIndex());
                assertEquals(1, summary.getExternalIdentifiers().getExternalIdentifier().size());
                assertEquals("arxiv", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getType());
                assertEquals("http://arxiv.org/abs/123456", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getUrl().getValue());
                assertEquals("123456", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
                assertEquals("/8888-8888-8888-8880/work/3357", summary.getPath());
                assertEquals("02", summary.getPublicationDate().getDay().getValue());
                assertEquals("02", summary.getPublicationDate().getMonth().getValue());
                assertEquals("2017", summary.getPublicationDate().getYear().getValue());
                assertEquals("Work # 1", summary.getTitle().getTitle().getContent());
                assertEquals(WorkType.CONFERENCE_PAPER, summary.getType());
                assertEquals(Visibility.PUBLIC, summary.getVisibility());
            } else if (summary.getPutCode().equals(Long.valueOf(3358))) {
                assertEquals("1", summary.getDisplayIndex());
                assertEquals(1, summary.getExternalIdentifiers().getExternalIdentifier().size());
                assertEquals("bibcode", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getType());
                assertEquals("http://adsabs.harvard.edu/abs/4567", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getUrl().getValue());
                assertEquals("4567", summary.getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
                assertEquals("/8888-8888-8888-8880/work/3358", summary.getPath());
                assertEquals("03", summary.getPublicationDate().getDay().getValue());
                assertEquals("03", summary.getPublicationDate().getMonth().getValue());
                assertEquals("2017", summary.getPublicationDate().getYear().getValue());
                assertEquals("Work # 2", summary.getTitle().getTitle().getContent());
                assertEquals(WorkType.JOURNAL_ARTICLE, summary.getType());
                assertEquals(Visibility.PUBLIC, summary.getVisibility());
            } else {
                fail("Invalid put code " + summary.getPutCode());
            }
        }
    }
    assertTrue(foundWorkWithNoExtIds);
}

Example 82 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class MemberV3ApiServiceDelegator_DistinctionsTest method testUpdateDistinctionDuplicateExternalIDs.

@Test(expected = OrcidDuplicatedActivityException.class)
public void testUpdateDistinctionDuplicateExternalIDs() {
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED, ScopePathType.ACTIVITIES_UPDATE);
    ExternalID e1 = new ExternalID();
    e1.setRelationship(Relationship.SELF);
    e1.setType("erm");
    e1.setUrl(new Url("https://orcid.org"));
    e1.setValue("err");
    ExternalID e2 = new ExternalID();
    e2.setRelationship(Relationship.SELF);
    e2.setType("err");
    e2.setUrl(new Url("http://bbc.co.uk"));
    e2.setValue("erm");
    ExternalIDs externalIDs = new ExternalIDs();
    externalIDs.getExternalIdentifier().add(e1);
    externalIDs.getExternalIdentifier().add(e2);
    Distinction distinction = (Distinction) Utils.getAffiliation(AffiliationType.DISTINCTION);
    distinction.setExternalIDs(externalIDs);
    Response response = serviceDelegator.createDistinction(ORCID, distinction);
    assertNotNull(response);
    assertEquals(HttpStatus.SC_CREATED, response.getStatus());
    Map<?, ?> map = response.getMetadata();
    assertNotNull(map);
    assertTrue(map.containsKey("Location"));
    List<?> resultWithPutCode = (List<?>) map.get("Location");
    Long putCode1 = Long.valueOf(String.valueOf(resultWithPutCode.get(0)));
    Distinction another = (Distinction) Utils.getAffiliation(AffiliationType.DISTINCTION);
    response = serviceDelegator.createDistinction(ORCID, another);
    map = response.getMetadata();
    assertNotNull(map);
    assertTrue(map.containsKey("Location"));
    resultWithPutCode = (List<?>) map.get("Location");
    Long putCode2 = Long.valueOf(String.valueOf(resultWithPutCode.get(0)));
    response = serviceDelegator.viewDistinction(ORCID, putCode2);
    another = (Distinction) response.getEntity();
    another.setExternalIDs(externalIDs);
    try {
        serviceDelegator.updateDistinction(ORCID, putCode2, another);
    } finally {
        serviceDelegator.deleteAffiliation(ORCID, putCode1);
        serviceDelegator.deleteAffiliation(ORCID, putCode2);
    }
}

Example 83 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class MemberV3ApiServiceDelegator_MembershipsTest method testUpdateMembershipDuplicateExternalIDs.

@Test(expected = OrcidDuplicatedActivityException.class)
public void testUpdateMembershipDuplicateExternalIDs() {
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED, ScopePathType.ACTIVITIES_UPDATE);
    ExternalID e1 = new ExternalID();
    e1.setRelationship(Relationship.SELF);
    e1.setType("erm");
    e1.setUrl(new Url("https://orcid.org"));
    e1.setValue("err");
    ExternalID e2 = new ExternalID();
    e2.setRelationship(Relationship.SELF);
    e2.setType("err");
    e2.setUrl(new Url("http://bbc.co.uk"));
    e2.setValue("erm");
    ExternalIDs externalIDs = new ExternalIDs();
    externalIDs.getExternalIdentifier().add(e1);
    externalIDs.getExternalIdentifier().add(e2);
    Membership membership = (Membership) Utils.getAffiliation(AffiliationType.MEMBERSHIP);
    membership.setExternalIDs(externalIDs);
    Response response = serviceDelegator.createMembership(ORCID, membership);
    assertNotNull(response);
    assertEquals(HttpStatus.SC_CREATED, response.getStatus());
    Map<?, ?> map = response.getMetadata();
    assertNotNull(map);
    assertTrue(map.containsKey("Location"));
    List<?> resultWithPutCode = (List<?>) map.get("Location");
    Long putCode1 = Long.valueOf(String.valueOf(resultWithPutCode.get(0)));
    Membership another = (Membership) Utils.getAffiliation(AffiliationType.MEMBERSHIP);
    response = serviceDelegator.createMembership(ORCID, another);
    map = response.getMetadata();
    assertNotNull(map);
    assertTrue(map.containsKey("Location"));
    resultWithPutCode = (List<?>) map.get("Location");
    Long putCode2 = Long.valueOf(String.valueOf(resultWithPutCode.get(0)));
    response = serviceDelegator.viewMembership(ORCID, putCode2);
    another = (Membership) response.getEntity();
    another.setExternalIDs(externalIDs);
    try {
        serviceDelegator.updateMembership(ORCID, putCode2, another);
    } finally {
        serviceDelegator.deleteAffiliation(ORCID, putCode1);
        serviceDelegator.deleteAffiliation(ORCID, putCode2);
    }
}

Example 84 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class MemberV3ApiServiceDelegator_MembershipsTest method testAddMembershipsDuplicateExternalIDs.

@Test(expected = OrcidDuplicatedActivityException.class)
public void testAddMembershipsDuplicateExternalIDs() {
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED, ScopePathType.ACTIVITIES_UPDATE);
    ExternalID e1 = new ExternalID();
    e1.setRelationship(Relationship.SELF);
    e1.setType("erm");
    e1.setUrl(new Url("https://orcid.org"));
    e1.setValue("err");
    ExternalID e2 = new ExternalID();
    e2.setRelationship(Relationship.SELF);
    e2.setType("err");
    e2.setUrl(new Url("http://bbc.co.uk"));
    e2.setValue("erm");
    ExternalIDs externalIDs = new ExternalIDs();
    externalIDs.getExternalIdentifier().add(e1);
    externalIDs.getExternalIdentifier().add(e2);
    Membership membership = (Membership) Utils.getAffiliation(AffiliationType.MEMBERSHIP);
    membership.setExternalIDs(externalIDs);
    Response response = serviceDelegator.createMembership(ORCID, membership);
    assertNotNull(response);
    assertEquals(HttpStatus.SC_CREATED, response.getStatus());
    Map<?, ?> map = response.getMetadata();
    assertNotNull(map);
    assertTrue(map.containsKey("Location"));
    List<?> resultWithPutCode = (List<?>) map.get("Location");
    Long putCode = Long.valueOf(String.valueOf(resultWithPutCode.get(0)));
    try {
        Membership duplicate = (Membership) Utils.getAffiliation(AffiliationType.MEMBERSHIP);
        duplicate.setExternalIDs(externalIDs);
        serviceDelegator.createMembership(ORCID, duplicate);
    } finally {
        serviceDelegator.deleteAffiliation(ORCID, putCode);
    }
}

Example 85 with ExternalID

use of org.orcid.jaxb.model.v3.dev1.record.ExternalID in project ORCID-Source by ORCID.

the class MemberV3ApiServiceDelegator_PeerReviewsTest method testAddPeerReviewWithSameExtIdValueButDifferentExtIdType.

@Test
public void testAddPeerReviewWithSameExtIdValueButDifferentExtIdType() {
    SecurityContextTestUtils.setUpSecurityContext("4444-4444-4444-4444", ScopePathType.READ_LIMITED, ScopePathType.ACTIVITIES_UPDATE);
    PeerReview peerReview1 = new PeerReview();
    ExternalIDs weis1 = new ExternalIDs();
    ExternalID wei1 = new ExternalID();
    wei1.setRelationship(null);
    wei1.setValue("same_but_different_type");
    wei1.setType(WorkExternalIdentifierType.DOI.value());
    weis1.getExternalIdentifier().add(wei1);
    peerReview1.setExternalIdentifiers(weis1);
    peerReview1.setGroupId("issn:0000003");
    peerReview1.setOrganization(Utils.getOrganization());
    peerReview1.setRole(Role.CHAIR);
    peerReview1.setSubjectContainerName(new Title("subject-container-name"));
    peerReview1.setSubjectExternalIdentifier(wei1);
    WorkTitle workTitle1 = new WorkTitle();
    workTitle1.setTitle(new Title("work-title"));
    peerReview1.setSubjectName(workTitle1);
    peerReview1.setSubjectType(WorkType.DATA_SET);
    peerReview1.setType(PeerReviewType.EVALUATION);
    Response response1 = serviceDelegator.createPeerReview("4444-4444-4444-4444", peerReview1);
    assertNotNull(response1);
    assertEquals(Response.Status.CREATED.getStatusCode(), response1.getStatus());
    Map<?, ?> map = response1.getMetadata();
    assertNotNull(map);
    assertTrue(map.containsKey("Location"));
    List<?> resultWithPutCode = (List<?>) map.get("Location");
    Long putCode1 = Long.valueOf(String.valueOf(resultWithPutCode.get(0)));
    PeerReview peerReview2 = new PeerReview();
    ExternalIDs weis2 = new ExternalIDs();
    ExternalID wei2 = new ExternalID();
    wei2.setRelationship(null);
    // Same value
    wei2.setValue("same_but_different_type");
    // But different
    wei2.setType(WorkExternalIdentifierType.ARXIV.value());
    // type
    weis2.getExternalIdentifier().add(wei2);
    peerReview2.setExternalIdentifiers(weis2);
    peerReview2.setGroupId("issn:0000003");
    peerReview2.setOrganization(Utils.getOrganization());
    peerReview2.setRole(Role.CHAIR);
    peerReview2.setSubjectContainerName(new Title("subject-container-name"));
    peerReview2.setSubjectExternalIdentifier(wei2);
    WorkTitle workTitle2 = new WorkTitle();
    workTitle2.setTitle(new Title("work-title"));
    peerReview2.setSubjectName(workTitle2);
    peerReview2.setSubjectType(WorkType.DATA_SET);
    peerReview2.setType(PeerReviewType.EVALUATION);
    Response response2 = serviceDelegator.createPeerReview("4444-4444-4444-4444", peerReview2);
    assertNotNull(response2);
    assertEquals(Response.Status.CREATED.getStatusCode(), response2.getStatus());
    map = response2.getMetadata();
    assertNotNull(map);
    assertTrue(map.containsKey("Location"));
    resultWithPutCode = (List<?>) map.get("Location");
    Long putCode2 = Long.valueOf(String.valueOf(resultWithPutCode.get(0)));
    // Delete new peer reviews so they don't affect other tests
    serviceDelegator.deletePeerReview("4444-4444-4444-4444", putCode1);
    serviceDelegator.deletePeerReview("4444-4444-4444-4444", putCode2);
}