Examples with PeerReview org.orcid.jaxb.model.v3.dev1.record.PeerReview used on opensource projects

Example 36 with PeerReview

use of org.orcid.jaxb.model.v3.dev1.record.PeerReview in project ORCID-Source by ORCID.

the class JSONPeerReviewWorkExternalIdentifierConverterV3Test method getPeerReview.

private PeerReview getPeerReview() throws JAXBException {
    JAXBContext context = JAXBContext.newInstance(new Class[] { PeerReview.class });
    Unmarshaller unmarshaller = context.createUnmarshaller();
    String name = "/record_3.0_dev1/samples/read_samples/peer-review-full-3.0_dev1.xml";
    InputStream inputStream = getClass().getResourceAsStream(name);
    return (PeerReview) unmarshaller.unmarshal(inputStream);
}

Example 37 with PeerReview

use of org.orcid.jaxb.model.v3.dev1.record.PeerReview in project ORCID-Source by ORCID.

the class PeerReviewManagerImpl method updatePeerReview.

@Override
public PeerReview updatePeerReview(String orcid, PeerReview peerReview, boolean isApiRequest) {
    PeerReviewEntity existingEntity = peerReviewDao.getPeerReview(orcid, peerReview.getPutCode());
    Visibility originalVisibility = Visibility.fromValue(existingEntity.getVisibility().value());
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    // Save the original source
    String existingSourceId = existingEntity.getSourceId();
    String existingClientSourceId = existingEntity.getClientSourceId();
    // If request comes from the API perform validations
    if (isApiRequest) {
        activityValidator.validatePeerReview(peerReview, sourceEntity, false, isApiRequest, originalVisibility);
        validateGroupId(peerReview);
        List<PeerReview> existingReviews = this.findPeerReviews(orcid);
        for (PeerReview existing : existingReviews) {
            // Dont compare the updated peer review with the DB version
            if (!existing.getPutCode().equals(peerReview.getPutCode())) {
                activityValidator.checkExternalIdentifiersForDuplicates(peerReview.getExternalIdentifiers(), existing.getExternalIdentifiers(), existing.getSource(), sourceManager.retrieveSourceEntity());
            }
        }
    } else {
        // check vocab of external identifiers
        externalIDValidator.validateWorkOrPeerReview(peerReview.getExternalIdentifiers());
        externalIDValidator.validateWorkOrPeerReview(peerReview.getSubjectExternalIdentifier());
    }
    PeerReviewEntity updatedEntity = new PeerReviewEntity();
    orcidSecurityManager.checkSource(existingEntity);
    jpaJaxbPeerReviewAdapter.toPeerReviewEntity(peerReview, updatedEntity);
    updatedEntity.setProfile(new ProfileEntity(orcid));
    updatedEntity.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(originalVisibility.value()));
    // Be sure it doesn't overwrite the source
    updatedEntity.setSourceId(existingSourceId);
    updatedEntity.setClientSourceId(existingClientSourceId);
    OrgEntity updatedOrganization = orgManager.getOrgEntity(peerReview);
    updatedEntity.setOrg(updatedOrganization);
    updatedEntity = peerReviewDao.merge(updatedEntity);
    peerReviewDao.flush();
    notificationManager.sendAmendEmail(orcid, AmendedSection.PEER_REVIEW, createItemList(updatedEntity));
    return jpaJaxbPeerReviewAdapter.toPeerReview(updatedEntity);
}

Example 38 with PeerReview

use of org.orcid.jaxb.model.v3.dev1.record.PeerReview in project ORCID-Source by ORCID.

the class ActivityManagerImpl method pubPeerReviewsMap.

public LinkedHashMap<Long, PeerReview> pubPeerReviewsMap(String orcid) {
    List<PeerReview> peerReviews = peerReviewManager.findPeerReviews(orcid);
    LinkedHashMap<Long, PeerReview> peerReviewMap = new LinkedHashMap<>();
    if (peerReviews != null) {
        if (!peerReviews.isEmpty()) {
            for (PeerReview peerReview : peerReviews) {
                if (peerReview.getVisibility().equals(Visibility.PUBLIC)) {
                    peerReviewMap.put(peerReview.getPutCode(), peerReview);
                }
            }
        }
    }
    return peerReviewMap;
}

Example 39 with PeerReview

use of org.orcid.jaxb.model.v3.dev1.record.PeerReview in project ORCID-Source by ORCID.

the class MemberV3ApiServiceDelegator_GeneralTest method testOrcidProfileCreate_CANT_UpdateOnClaimedAccounts.

@Test
public void testOrcidProfileCreate_CANT_UpdateOnClaimedAccounts() {
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED);
    Response response = serviceDelegator.viewAddress(ORCID, 9L);
    assertNotNull(response);
    Address a = (Address) response.getEntity();
    assertNotNull(a);
    try {
        SecurityContextTestUtils.setUpSecurityContextForClientOnly();
        serviceDelegator.updateAddress(ORCID, a.getPutCode(), a);
        fail();
    } catch (IllegalStateException e) {
        assertEquals("Non client credential scope found in client request", e.getMessage());
    }
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED);
    response = serviceDelegator.viewEducation(ORCID, 20L);
    assertNotNull(response);
    Education edu = (Education) response.getEntity();
    assertNotNull(edu);
    try {
        SecurityContextTestUtils.setUpSecurityContextForClientOnly();
        serviceDelegator.updateEducation(ORCID, edu.getPutCode(), edu);
        fail();
    } catch (IllegalStateException e) {
        assertEquals("Non client credential scope found in client request", e.getMessage());
    }
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED);
    response = serviceDelegator.viewEmployment(ORCID, 17L);
    assertNotNull(response);
    Employment emp = (Employment) response.getEntity();
    assertNotNull(emp);
    try {
        SecurityContextTestUtils.setUpSecurityContextForClientOnly();
        serviceDelegator.updateEmployment(ORCID, emp.getPutCode(), emp);
        fail();
    } catch (IllegalStateException e) {
        assertEquals("Non client credential scope found in client request", e.getMessage());
    }
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED);
    response = serviceDelegator.viewExternalIdentifier(ORCID, 13L);
    assertNotNull(response);
    PersonExternalIdentifier extId = (PersonExternalIdentifier) response.getEntity();
    assertNotNull(extId);
    try {
        SecurityContextTestUtils.setUpSecurityContextForClientOnly();
        serviceDelegator.updateExternalIdentifier(ORCID, extId.getPutCode(), extId);
        fail();
    } catch (IllegalStateException e) {
        assertEquals("Non client credential scope found in client request", e.getMessage());
    }
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED);
    response = serviceDelegator.viewFunding(ORCID, 10L);
    assertNotNull(response);
    Funding f = (Funding) response.getEntity();
    assertNotNull(f);
    try {
        SecurityContextTestUtils.setUpSecurityContextForClientOnly();
        serviceDelegator.updateFunding(ORCID, f.getPutCode(), f);
        fail();
    } catch (IllegalStateException e) {
        assertEquals("Non client credential scope found in client request", e.getMessage());
    }
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED);
    response = serviceDelegator.viewKeyword(ORCID, 9L);
    assertNotNull(response);
    Keyword k = (Keyword) response.getEntity();
    assertNotNull(k);
    try {
        SecurityContextTestUtils.setUpSecurityContextForClientOnly();
        serviceDelegator.updateKeyword(ORCID, k.getPutCode(), k);
        fail();
    } catch (IllegalStateException e) {
        assertEquals("Non client credential scope found in client request", e.getMessage());
    }
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED);
    response = serviceDelegator.viewOtherName(ORCID, 13L);
    assertNotNull(response);
    OtherName o = (OtherName) response.getEntity();
    assertNotNull(o);
    try {
        SecurityContextTestUtils.setUpSecurityContextForClientOnly();
        serviceDelegator.updateOtherName(ORCID, o.getPutCode(), o);
        fail();
    } catch (IllegalStateException e) {
        assertEquals("Non client credential scope found in client request", e.getMessage());
    }
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED);
    response = serviceDelegator.viewPeerReview(ORCID, 9L);
    assertNotNull(response);
    PeerReview p = (PeerReview) response.getEntity();
    assertNotNull(p);
    try {
        SecurityContextTestUtils.setUpSecurityContextForClientOnly();
        serviceDelegator.updatePeerReview(ORCID, p.getPutCode(), p);
        fail();
    } catch (IllegalStateException e) {
        assertEquals("Non client credential scope found in client request", e.getMessage());
    }
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED);
    response = serviceDelegator.viewResearcherUrl(ORCID, 13L);
    assertNotNull(response);
    ResearcherUrl r = (ResearcherUrl) response.getEntity();
    assertNotNull(r);
    try {
        SecurityContextTestUtils.setUpSecurityContextForClientOnly();
        serviceDelegator.updateResearcherUrl(ORCID, r.getPutCode(), r);
        fail();
    } catch (IllegalStateException e) {
        assertEquals("Non client credential scope found in client request", e.getMessage());
    }
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_LIMITED);
    response = serviceDelegator.viewWork(ORCID, 11L);
    assertNotNull(response);
    Work w = (Work) response.getEntity();
    assertNotNull(w);
    try {
        SecurityContextTestUtils.setUpSecurityContextForClientOnly();
        serviceDelegator.updateWork(ORCID, w.getPutCode(), w);
        fail();
    } catch (IllegalStateException e) {
        assertEquals("Non client credential scope found in client request", e.getMessage());
    }
}

Example 40 with PeerReview

use of org.orcid.jaxb.model.v3.dev1.record.PeerReview in project ORCID-Source by ORCID.

the class MemberV3ApiServiceDelegator_PeerReviewsTest method testAddPeerReviewDuplicateFails.

@Test(expected = OrcidDuplicatedActivityException.class)
public void testAddPeerReviewDuplicateFails() {
    SecurityContextTestUtils.setUpSecurityContext("4444-4444-4444-4447", ScopePathType.READ_LIMITED, ScopePathType.ACTIVITIES_UPDATE);
    Response response = serviceDelegator.viewPeerReview("4444-4444-4444-4447", 6L);
    assertNotNull(response);
    PeerReview peerReview = (PeerReview) response.getEntity();
    assertNotNull(peerReview);
    peerReview.setUrl(new Url("http://updated.com/url"));
    peerReview.getSubjectName().getTitle().setContent("Updated Title");
    // disambiguated org is required in API v3
    DisambiguatedOrganization disambiguatedOrg = new DisambiguatedOrganization();
    disambiguatedOrg.setDisambiguatedOrganizationIdentifier("some-org");
    disambiguatedOrg.setDisambiguationSource("FUNDREF");
    peerReview.getOrganization().setDisambiguatedOrganization(disambiguatedOrg);
    peerReview.setPutCode(null);
    response = serviceDelegator.createPeerReview("4444-4444-4444-4447", peerReview);
}