Examples with Works org.orcid.jaxb.model.v3.dev1.record.summary.Works used on opensource projects

Example 36 with Works

use of org.orcid.jaxb.model.v3.dev1.record.summary.Works in project ORCID-Source by ORCID.

the class OrcidSecurityManager_ActivitiesSummaryTest method testActivitiesSummary_When_AllPrivate_NoSource_ReadLimitedToken.

@Test
public void testActivitiesSummary_When_AllPrivate_NoSource_ReadLimitedToken() {
    SecurityContextTestUtils.setUpSecurityContext(ORCID_1, CLIENT_1, ScopePathType.ACTIVITIES_READ_LIMITED);
    DistinctionSummary d1 = createDistinctionSummary(Visibility.PRIVATE, CLIENT_2);
    DistinctionSummary d2 = createDistinctionSummary(Visibility.PRIVATE, CLIENT_2);
    DistinctionSummary d3 = createDistinctionSummary(Visibility.PRIVATE, CLIENT_2);
    EducationSummary e1 = createEducationSummary(Visibility.PRIVATE, CLIENT_2);
    EducationSummary e2 = createEducationSummary(Visibility.PRIVATE, CLIENT_2);
    EducationSummary e3 = createEducationSummary(Visibility.PRIVATE, CLIENT_2);
    EmploymentSummary em1 = createEmploymentSummary(Visibility.PRIVATE, CLIENT_2);
    EmploymentSummary em2 = createEmploymentSummary(Visibility.PRIVATE, CLIENT_2);
    EmploymentSummary em3 = createEmploymentSummary(Visibility.PRIVATE, CLIENT_2);
    InvitedPositionSummary i1 = createInvitedPositionSummary(Visibility.PRIVATE, CLIENT_2);
    InvitedPositionSummary i2 = createInvitedPositionSummary(Visibility.PRIVATE, CLIENT_2);
    InvitedPositionSummary i3 = createInvitedPositionSummary(Visibility.PRIVATE, CLIENT_2);
    MembershipSummary m1 = createMembershipSummary(Visibility.PRIVATE, CLIENT_2);
    MembershipSummary m2 = createMembershipSummary(Visibility.PRIVATE, CLIENT_2);
    MembershipSummary m3 = createMembershipSummary(Visibility.PRIVATE, CLIENT_2);
    QualificationSummary q1 = createQualificationSummary(Visibility.PRIVATE, CLIENT_2);
    QualificationSummary q2 = createQualificationSummary(Visibility.PRIVATE, CLIENT_2);
    QualificationSummary q3 = createQualificationSummary(Visibility.PRIVATE, CLIENT_2);
    ServiceSummary s1 = createServiceSummary(Visibility.PRIVATE, CLIENT_2);
    ServiceSummary s2 = createServiceSummary(Visibility.PRIVATE, CLIENT_2);
    ServiceSummary s3 = createServiceSummary(Visibility.PRIVATE, CLIENT_2);
    FundingSummary f1 = createFundingSummary(Visibility.PRIVATE, CLIENT_2, EXTID_1);
    FundingSummary f2 = createFundingSummary(Visibility.PRIVATE, CLIENT_2, EXTID_2);
    FundingSummary f3 = createFundingSummary(Visibility.PRIVATE, CLIENT_2, EXTID_3);
    PeerReviewSummary p1 = createPeerReviewSummary(Visibility.PRIVATE, CLIENT_2, EXTID_1);
    PeerReviewSummary p2 = createPeerReviewSummary(Visibility.PRIVATE, CLIENT_2, EXTID_2);
    PeerReviewSummary p3 = createPeerReviewSummary(Visibility.PRIVATE, CLIENT_2, EXTID_3);
    WorkSummary w1 = createWorkSummary(Visibility.PRIVATE, CLIENT_2, EXTID_1);
    WorkSummary w2 = createWorkSummary(Visibility.PRIVATE, CLIENT_2, EXTID_2);
    WorkSummary w3 = createWorkSummary(Visibility.PRIVATE, CLIENT_2, EXTID_3);
    ActivitiesSummary as = new ActivitiesSummary();
    as.setEducations(createEducations(e1, e2, e3));
    as.setEmployments(createEmployments(em1, em2, em3));
    as.setFundings(createFundings(f1, f2, f3));
    as.setPeerReviews(createPeerReviews(p1, p2, p3));
    as.setWorks(createWorks(w1, w2, w3));
    as.setDistinctions(createDistinctions(d1, d2, d3));
    as.setInvitedPositions(createInvitedPositions(i1, i2, i3));
    as.setMemberships(createMemberships(m1, m2, m3));
    as.setQualifications(createQualifications(q1, q2, q3));
    as.setServices(createServices(s1, s2, s3));
    orcidSecurityManager.checkAndFilter(ORCID_1, as);
    assertNotNull(as);
    // Check distinctions
    assertEquals(0, as.getDistinctions().getSummaries().size());
    // Check invited positions
    assertEquals(0, as.getInvitedPositions().getSummaries().size());
    // Check memberships
    assertEquals(0, as.getMemberships().getSummaries().size());
    // Check services
    assertEquals(0, as.getServices().getSummaries().size());
    // Check qualifications
    assertEquals(0, as.getQualifications().getSummaries().size());
    // Check educations
    assertEquals(0, as.getEducations().getSummaries().size());
    // Check employments
    assertEquals(0, as.getEmployments().getSummaries().size());
    // Check fundings
    assertEquals(0, as.getFundings().getFundingGroup().size());
    // Check peer reviews
    assertEquals(0, as.getPeerReviews().getPeerReviewGroup().size());
    // Check works
    assertEquals(0, as.getWorks().getWorkGroup().size());
}

Example 37 with Works

use of org.orcid.jaxb.model.v3.dev1.record.summary.Works in project ORCID-Source by ORCID.

the class ProfileEntityManagerImpl method clearRecord.

/**
 * Clears all record info but the email addresses, that stay unmodified
 */
private void clearRecord(String orcid, Boolean disableTokens) {
    // Remove works
    workManager.removeAllWorks(orcid);
    // Remove funding
    fundingManager.removeAllFunding(orcid);
    // Remove affiliations
    affiliationsManager.removeAllAffiliations(orcid);
    // Remove peer reviews
    peerReviewManager.removeAllPeerReviews(orcid);
    // Remove addresses
    addressManager.removeAllAddress(orcid);
    // Remove external identifiers
    externalIdentifierManager.removeAllExternalIdentifiers(orcid);
    // Remove researcher urls
    researcherUrlManager.removeAllResearcherUrls(orcid);
    // Remove other names
    otherNameManager.removeAllOtherNames(orcid);
    // Remove keywords
    profileKeywordManager.removeAllKeywords(orcid);
    // Remove biography
    if (biographyManager.exists(orcid)) {
        Biography deprecatedBio = new Biography();
        deprecatedBio.setContent(null);
        deprecatedBio.setVisibility(Visibility.PRIVATE);
        biographyManager.updateBiography(orcid, deprecatedBio);
    }
    // Set the deactivated names
    if (recordNameManager.exists(orcid)) {
        Name name = new Name();
        name.setCreditName(new CreditName());
        name.setGivenNames(new GivenNames("Given Names Deactivated"));
        name.setFamilyName(new FamilyName("Family Name Deactivated"));
        name.setVisibility(Visibility.PUBLIC);
        name.setPath(orcid);
        recordNameManager.updateRecordName(orcid, name);
    }
    // 
    userConnectionDao.deleteByOrcid(orcid);
    if (disableTokens) {
        // Disable any token that belongs to this record
        orcidOauth2TokenDetailService.disableAccessTokenByUserOrcid(orcid, RevokeReason.RECORD_DEACTIVATED);
    }
    // Change default visibility to private
    profileDao.updateDefaultVisibility(orcid, org.orcid.jaxb.model.common_v2.Visibility.PRIVATE);
}

Example 38 with Works

use of org.orcid.jaxb.model.v3.dev1.record.summary.Works in project ORCID-Source by ORCID.

the class WorkManagerImpl method createNewWorkGroup.

@Override
public void createNewWorkGroup(List<Long> workIds, String orcid) {
    List<MinimizedWorkEntity> works = workEntityCacheManager.retrieveMinimizedWorks(orcid, workIds, getLastModified(orcid));
    JSONWorkExternalIdentifiersConverterV3 externalIdConverter = new JSONWorkExternalIdentifiersConverterV3(norm, localeManager);
    ExternalIDs allExternalIDs = new ExternalIDs();
    MinimizedWorkEntity userVersion = null;
    MinimizedWorkEntity userPreferred = null;
    for (MinimizedWorkEntity work : works) {
        if (orcid.equals(work.getSourceId())) {
            userVersion = work;
        }
        if (userPreferred == null || userPreferred.getDisplayIndex() < work.getDisplayIndex()) {
            userPreferred = work;
        }
        ExternalIDs externalIDs = externalIdConverter.convertFrom(work.getExternalIdentifiersJson(), null);
        for (ExternalID externalID : externalIDs.getExternalIdentifier()) {
            if (!allExternalIDs.getExternalIdentifier().contains(externalID)) {
                allExternalIDs.getExternalIdentifier().add(externalID);
            }
        }
    }
    String externalIDsJson = externalIdConverter.convertTo(allExternalIDs, null);
    if (userVersion != null) {
        userVersion.setExternalIdentifiersJson(externalIDsJson);
    } else {
        WorkEntity allPreferredMetadata = createCopyOfUserPreferredWork(userPreferred);
        allPreferredMetadata.setExternalIdentifiersJson(externalIDsJson);
        workDao.persist(allPreferredMetadata);
    }
}

Example 39 with Works

use of org.orcid.jaxb.model.v3.dev1.record.summary.Works in project ORCID-Source by ORCID.

the class WorkManagerImpl method createWorks.

/**
 * Add a list of works to the given profile
 *
 * @param works
 *            The list of works that want to be added
 * @param orcid
 *            The id of the user we want to add the works to
 *
 * @return the work bulk with the put codes of the new works or the error
 *         that indicates why a work can't be added
 */
@Override
@Transactional
public WorkBulk createWorks(String orcid, WorkBulk workBulk) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    List<Work> existingWorks = this.findWorks(orcid);
    if (workBulk.getBulk() != null && !workBulk.getBulk().isEmpty()) {
        List<BulkElement> bulk = workBulk.getBulk();
        Set<ExternalID> existingExternalIdentifiers = buildExistingExternalIdsSet(existingWorks, sourceEntity.getSourceId());
        if ((existingWorks.size() + bulk.size()) > this.maxNumOfActivities) {
            throw new ExceedMaxNumberOfElementsException();
        }
        // Check bulk size
        if (bulk.size() > maxBulkSize) {
            Locale locale = localeManager.getLocale();
            throw new IllegalArgumentException(messageSource.getMessage("apiError.validation_too_many_elements_in_bulk.exception", new Object[] { maxBulkSize }, locale));
        }
        for (int i = 0; i < bulk.size(); i++) {
            if (Work.class.isAssignableFrom(bulk.get(i).getClass())) {
                Work work = (Work) bulk.get(i);
                try {
                    activityValidator.validateWork(work, sourceEntity, true, true, null);
                    // Validate it is not duplicated
                    if (work.getExternalIdentifiers() != null) {
                        for (ExternalID extId : work.getExternalIdentifiers().getExternalIdentifier()) {
                            // normalise the provided ID
                            extId.setNormalized(new TransientNonEmptyString(norm.normalise(extId.getType(), extId.getValue())));
                            // If the external id exists and is a SELF identifier, then mark it as duplicated
                            if (existingExternalIdentifiers.contains(extId) && Relationship.SELF.equals(extId.getRelationship())) {
                                Map<String, String> params = new HashMap<String, String>();
                                params.put("clientName", sourceEntity.getSourceName());
                                throw new OrcidDuplicatedActivityException(params);
                            }
                        }
                    }
                    // Save the work
                    WorkEntity workEntity = jpaJaxbWorkAdapter.toWorkEntity(work);
                    ProfileEntity profile = profileEntityCacheManager.retrieve(orcid);
                    workEntity.setOrcid(orcid);
                    workEntity.setAddedToProfileDate(new Date());
                    // Set source id
                    if (sourceEntity.getSourceProfile() != null) {
                        workEntity.setSourceId(sourceEntity.getSourceProfile().getId());
                    }
                    if (sourceEntity.getSourceClient() != null) {
                        workEntity.setClientSourceId(sourceEntity.getSourceClient().getId());
                    }
                    setIncomingWorkPrivacy(workEntity, profile);
                    DisplayIndexCalculatorHelper.setDisplayIndexOnNewEntity(workEntity, true);
                    workDao.persist(workEntity);
                    // Update the element in the bulk
                    Work updatedWork = jpaJaxbWorkAdapter.toWork(workEntity);
                    bulk.set(i, updatedWork);
                    // Add the work extIds to the list of existing external identifiers
                    addExternalIdsToExistingSet(updatedWork, existingExternalIdentifiers);
                } catch (Exception e) {
                    // Get the exception
                    OrcidError orcidError = orcidCoreExceptionMapper.getV3OrcidError(e);
                    bulk.set(i, orcidError);
                }
            }
        }
        workDao.flush();
    }
    return workBulk;
}

Example 40 with Works

use of org.orcid.jaxb.model.v3.dev1.record.summary.Works in project ORCID-Source by ORCID.

the class ActivitiesSummaryManagerReadOnlyImpl method getActivitiesSummary.

public ActivitiesSummary getActivitiesSummary(String orcid, boolean justPublic) {
    ActivitiesSummary activities = new ActivitiesSummary();
    // Set distinctions
    List<DistinctionSummary> distinctionsList = affiliationsManager.getDistinctionSummaryList(orcid);
    Distinctions distinctions = new Distinctions();
    for (DistinctionSummary summary : distinctionsList) {
        if (justPublic) {
            if (Visibility.PUBLIC.equals(summary.getVisibility())) {
                distinctions.getSummaries().add(summary);
            }
        } else {
            distinctions.getSummaries().add(summary);
        }
    }
    activities.setDistinctions(distinctions);
    // Set educations
    List<EducationSummary> educationsList = affiliationsManager.getEducationSummaryList(orcid);
    Educations educations = new Educations();
    for (EducationSummary summary : educationsList) {
        if (justPublic) {
            if (Visibility.PUBLIC.equals(summary.getVisibility())) {
                educations.getSummaries().add(summary);
            }
        } else {
            educations.getSummaries().add(summary);
        }
    }
    activities.setEducations(educations);
    // Set employments
    List<EmploymentSummary> employmentList = affiliationsManager.getEmploymentSummaryList(orcid);
    Employments employments = new Employments();
    for (EmploymentSummary summary : employmentList) {
        if (justPublic) {
            if (Visibility.PUBLIC.equals(summary.getVisibility())) {
                employments.getSummaries().add(summary);
            }
        } else {
            employments.getSummaries().add(summary);
        }
    }
    activities.setEmployments(employments);
    // Set invited positions
    List<InvitedPositionSummary> invitedPositionsList = affiliationsManager.getInvitedPositionSummaryList(orcid);
    InvitedPositions invitedPositions = new InvitedPositions();
    for (InvitedPositionSummary summary : invitedPositionsList) {
        if (justPublic) {
            if (Visibility.PUBLIC.equals(summary.getVisibility())) {
                invitedPositions.getSummaries().add(summary);
            }
        } else {
            invitedPositions.getSummaries().add(summary);
        }
    }
    activities.setInvitedPositions(invitedPositions);
    // Set memberships
    List<MembershipSummary> membershipsList = affiliationsManager.getMembershipSummaryList(orcid);
    Memberships memberships = new Memberships();
    for (MembershipSummary summary : membershipsList) {
        if (justPublic) {
            if (Visibility.PUBLIC.equals(summary.getVisibility())) {
                memberships.getSummaries().add(summary);
            }
        } else {
            memberships.getSummaries().add(summary);
        }
    }
    activities.setMemberships(memberships);
    // Set qualifications
    List<QualificationSummary> qualificationsList = affiliationsManager.getQualificationSummaryList(orcid);
    Qualifications qualifications = new Qualifications();
    for (QualificationSummary summary : qualificationsList) {
        if (justPublic) {
            if (Visibility.PUBLIC.equals(summary.getVisibility())) {
                qualifications.getSummaries().add(summary);
            }
        } else {
            qualifications.getSummaries().add(summary);
        }
    }
    activities.setQualifications(qualifications);
    // Set services
    List<ServiceSummary> servicesList = affiliationsManager.getServiceSummaryList(orcid);
    Services services = new Services();
    for (ServiceSummary summary : servicesList) {
        if (justPublic) {
            if (Visibility.PUBLIC.equals(summary.getVisibility())) {
                services.getSummaries().add(summary);
            }
        } else {
            services.getSummaries().add(summary);
        }
    }
    activities.setServices(services);
    // Set fundings
    List<FundingSummary> fundingSummaries = fundingManager.getFundingSummaryList(orcid);
    Fundings fundings = fundingManager.groupFundings(fundingSummaries, justPublic);
    activities.setFundings(fundings);
    // Set peer reviews
    List<PeerReviewSummary> peerReviewSummaries = peerReviewManager.getPeerReviewSummaryList(orcid);
    PeerReviews peerReviews = peerReviewManager.groupPeerReviews(peerReviewSummaries, justPublic);
    activities.setPeerReviews(peerReviews);
    // Set works
    List<WorkSummary> workSummaries = workManager.getWorksSummaryList(orcid);
    Works works = workManager.groupWorks(workSummaries, justPublic);
    activities.setWorks(works);
    return activities;
}