Examples with PeerReviews org.orcid.jaxb.model.v3.dev1.record.summary.PeerReviews used on opensource projects

Example 1 with PeerReviews

use of org.orcid.jaxb.model.v3.dev1.record.summary.PeerReviews in project ORCID-Source by ORCID.

the class PeerReviewsController method createPeerReviewIdList.

/**
 * Create a funding id list and sorts a map associated with the list in in
 * the session
 */
private List<String> createPeerReviewIdList(HttpServletRequest request) {
    String orcid = getCurrentUserOrcid();
    List<PeerReview> peerReviews = peerReviewManager.findPeerReviews(orcid);
    Map<String, String> languages = lm.buildLanguageMap(getUserLocale(), false);
    HashMap<Long, PeerReviewForm> peerReviewMap = new HashMap<>();
    List<String> peerReviewIds = new ArrayList<String>();
    if (peerReviews != null) {
        for (PeerReview peerReview : peerReviews) {
            try {
                PeerReviewForm form = PeerReviewForm.valueOf(peerReview);
                if (form.getExternalIdentifiers() != null && !form.getExternalIdentifiers().isEmpty()) {
                    for (WorkExternalIdentifier wExtId : form.getExternalIdentifiers()) {
                        if (PojoUtil.isEmpty(wExtId.getRelationship())) {
                            wExtId.setRelationship(Text.valueOf(Relationship.SELF.value()));
                        }
                    }
                }
                if (form.getTranslatedSubjectName() != null) {
                    // Set translated title language name
                    if (!(form.getTranslatedSubjectName() == null) && !StringUtils.isEmpty(form.getTranslatedSubjectName().getLanguageCode())) {
                        String languageName = languages.get(form.getTranslatedSubjectName().getLanguageCode());
                        form.getTranslatedSubjectName().setLanguageName(languageName);
                    }
                }
                form.setCountryForDisplay(getMessage(buildInternationalizationKey(CountryIsoEntity.class, peerReview.getOrganization().getAddress().getCountry().name())));
                // Set the numeric id (the table id in the group_id_record table) of the group id
                if (form.getGroupId() != null && !PojoUtil.isEmpty(form.getGroupId().getValue())) {
                    GroupIdRecord groupId = groupIdRecordManager.findByGroupId(form.getGroupId().getValue()).get();
                    form.setGroupIdPutCode(Text.valueOf(groupId.getPutCode()));
                }
                peerReviewMap.put(peerReview.getPutCode(), form);
                peerReviewIds.add(String.valueOf(peerReview.getPutCode()));
            } catch (Exception e) {
                LOGGER.error("Failed to parse as PeerReview. Put code" + peerReview.getPutCode(), e);
            }
        }
        request.getSession().setAttribute(PEER_REVIEW_MAP, peerReviewMap);
    }
    return peerReviewIds;
}

Example 2 with PeerReviews

use of org.orcid.jaxb.model.v3.dev1.record.summary.PeerReviews in project ORCID-Source by ORCID.

the class PublicAPISecurityManagerV3Test method getPeerReviews.

private PeerReviews getPeerReviews(Visibility... vs) {
    PeerReviews peerReviews = new PeerReviews();
    for (Visibility v : vs) {
        PeerReviewGroup g = new PeerReviewGroup();
        PeerReviewSummary s = new PeerReviewSummary();
        s.setVisibility(v);
        g.getPeerReviewSummary().add(s);
        peerReviews.getPeerReviewGroup().add(g);
    }
    return peerReviews;
}

Example 3 with PeerReviews

use of org.orcid.jaxb.model.v3.dev1.record.summary.PeerReviews in project ORCID-Source by ORCID.

the class PeerReviewManagerReadOnlyImpl method groupPeerReviews.

/**
 * Generate a grouped list of peer reviews with the given list of peer reviews
 *
 * @param peerReviews
 *          The list of peer reviews to group
 * @param justPublic
 *          Specify if we want to group only the public elements in the given list
 * @return PeerReviews element with the PeerReviewSummary elements grouped
 */
@Override
public PeerReviews groupPeerReviews(List<PeerReviewSummary> peerReviews, boolean justPublic) {
    ActivitiesGroupGenerator groupGenerator = new ActivitiesGroupGenerator();
    PeerReviews result = new PeerReviews();
    for (PeerReviewSummary peerReview : peerReviews) {
        if (justPublic && !peerReview.getVisibility().equals(org.orcid.jaxb.model.v3.dev1.common.Visibility.PUBLIC)) {
        // If it is just public and the funding is not public, just
        // ignore it
        } else {
            groupGenerator.group(peerReview);
        }
    }
    List<ActivitiesGroup> groups = groupGenerator.getGroups();
    for (ActivitiesGroup group : groups) {
        Set<GroupAble> groupKeys = group.getGroupKeys();
        Set<GroupableActivity> activities = group.getActivities();
        PeerReviewGroup peerReviewGroup = new PeerReviewGroup();
        // Fill the peer review groups with the external identifiers
        if (groupKeys == null || groupKeys.isEmpty()) {
            // Initialize the ids as an empty list
            peerReviewGroup.getIdentifiers().getExternalIdentifier();
        } else {
            for (GroupAble groupKey : groupKeys) {
                PeerReviewGroupKey key = (PeerReviewGroupKey) groupKey;
                ExternalID id = new ExternalID();
                // TODO: this is not nice
                id.setType(PeerReviewGroupKey.KEY_NAME);
                id.setValue(key.getGroupId());
                peerReviewGroup.getIdentifiers().getExternalIdentifier().add(id);
            }
        }
        // Fill the peer review group with the list of activities
        for (GroupableActivity activity : activities) {
            PeerReviewSummary peerReviewSummary = (PeerReviewSummary) activity;
            peerReviewGroup.getPeerReviewSummary().add(peerReviewSummary);
        }
        // Sort the peer reviews
        Collections.sort(peerReviewGroup.getPeerReviewSummary(), new GroupableActivityComparator());
        result.getPeerReviewGroup().add(peerReviewGroup);
    }
    return result;
}

Example 4 with PeerReviews

use of org.orcid.jaxb.model.v3.dev1.record.summary.PeerReviews in project ORCID-Source by ORCID.

the class RecordTest method testViewRecordFromMemberAPI.

@Test
public void testViewRecordFromMemberAPI() throws InterruptedException, JSONException {
    String accessToken = getAccessToken();
    assertNotNull(accessToken);
    ClientResponse response = memberV3Dev1ApiClient.viewRecord(getUser1OrcidId(), accessToken);
    assertNotNull(response);
    assertEquals("invalid " + response, 200, response.getStatus());
    Record record = response.getEntity(Record.class);
    assertNotNull(record);
    assertNotNull(record.getOrcidIdentifier());
    assertEquals(getUser1OrcidId(), record.getOrcidIdentifier().getPath());
    // Check the visibility of every activity that exists
    if (record.getActivitiesSummary() != null) {
        // Distinctions
        if (record.getActivitiesSummary().getDistinctions() != null) {
            Distinctions e = record.getActivitiesSummary().getDistinctions();
            if (e.getSummaries() != null) {
                for (DistinctionSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Educations
        if (record.getActivitiesSummary().getEducations() != null) {
            Educations e = record.getActivitiesSummary().getEducations();
            if (e.getSummaries() != null) {
                for (EducationSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Employments
        if (record.getActivitiesSummary().getEmployments() != null) {
            Employments e = record.getActivitiesSummary().getEmployments();
            if (e.getSummaries() != null) {
                for (EmploymentSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // InvitedPositions
        if (record.getActivitiesSummary().getInvitedPositions() != null) {
            InvitedPositions e = record.getActivitiesSummary().getInvitedPositions();
            if (e.getSummaries() != null) {
                for (InvitedPositionSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Memberships
        if (record.getActivitiesSummary().getMemberships() != null) {
            Memberships e = record.getActivitiesSummary().getMemberships();
            if (e.getSummaries() != null) {
                for (MembershipSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Qualifications
        if (record.getActivitiesSummary().getQualifications() != null) {
            Qualifications e = record.getActivitiesSummary().getQualifications();
            if (e.getSummaries() != null) {
                for (QualificationSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Services
        if (record.getActivitiesSummary().getServices() != null) {
            Services e = record.getActivitiesSummary().getServices();
            if (e.getSummaries() != null) {
                for (ServiceSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Fundings
        if (record.getActivitiesSummary().getFundings() != null) {
            Fundings f = record.getActivitiesSummary().getFundings();
            List<FundingGroup> groups = f.getFundingGroup();
            if (groups != null) {
                for (FundingGroup fGroup : groups) {
                    List<FundingSummary> summaries = fGroup.getFundingSummary();
                    if (summaries != null) {
                        for (FundingSummary s : summaries) {
                            assertNotNull(s.getSource());
                            assertNotNull(s.getVisibility());
                            Visibility v = s.getVisibility();
                            // If the visibility is PRIVATE the client should be the owner
                            if (Visibility.PRIVATE.equals(v)) {
                                assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                            }
                        }
                    }
                }
            }
        }
        // PeerReviews
        if (record.getActivitiesSummary().getPeerReviews() != null) {
            PeerReviews p = record.getActivitiesSummary().getPeerReviews();
            List<PeerReviewGroup> groups = p.getPeerReviewGroup();
            if (groups != null) {
                for (PeerReviewGroup pGroup : groups) {
                    List<PeerReviewSummary> summaries = pGroup.getPeerReviewSummary();
                    if (summaries != null) {
                        for (PeerReviewSummary s : summaries) {
                            assertNotNull(s.getSource());
                            assertNotNull(s.getVisibility());
                            Visibility v = s.getVisibility();
                            // If the visibility is PRIVATE the client should be the owner
                            if (Visibility.PRIVATE.equals(v)) {
                                assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                            }
                        }
                    }
                }
            }
        }
        // Works
        if (record.getActivitiesSummary().getWorks() != null) {
            Works w = record.getActivitiesSummary().getWorks();
            List<WorkGroup> groups = w.getWorkGroup();
            if (groups != null) {
                for (WorkGroup wGroup : groups) {
                    List<WorkSummary> summaries = wGroup.getWorkSummary();
                    if (summaries != null) {
                        for (WorkSummary s : summaries) {
                            assertNotNull(s.getSource());
                            assertNotNull(s.getVisibility());
                            Visibility v = s.getVisibility();
                            // If the visibility is PRIVATE the client should be the owner
                            if (Visibility.PRIVATE.equals(v)) {
                                assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                            }
                        }
                    }
                }
            }
        }
    }
    // Check the visibility of every biography elements that exists
    if (record.getPerson() != null) {
        // Address
        if (record.getPerson().getAddresses() != null) {
            Addresses addresses = record.getPerson().getAddresses();
            List<Address> list = addresses.getAddress();
            if (list != null) {
                for (Address o : list) {
                    assertNotNull(o.getSource());
                    assertNotNull(o.getVisibility());
                    Visibility v = o.getVisibility();
                    // If the visibility is PRIVATE the client should be the owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), o.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Biography
        if (record.getPerson().getBiography() != null) {
            Biography b = record.getPerson().getBiography();
            if (b != null) {
                assertNotNull(b.getVisibility());
                if (Visibility.PRIVATE.equals(b.getVisibility())) {
                    fail("Visibility is private");
                }
            }
        }
        // Emails
        if (record.getPerson().getEmails() != null) {
            Emails emails = record.getPerson().getEmails();
            List<Email> list = emails.getEmails();
            if (list != null) {
                for (Email e : list) {
                    assertNotNull(e.getVisibility());
                    if (Visibility.PRIVATE.equals(e.getVisibility())) {
                        fail("Email " + e.getEmail() + " is private");
                    }
                }
            }
        }
        // External identifiers
        if (record.getPerson().getExternalIdentifiers() != null) {
            PersonExternalIdentifiers extIds = record.getPerson().getExternalIdentifiers();
            List<PersonExternalIdentifier> list = extIds.getExternalIdentifiers();
            if (list != null) {
                for (PersonExternalIdentifier e : list) {
                    assertNotNull(e.getVisibility());
                    if (Visibility.PRIVATE.equals(e.getVisibility())) {
                        assertEquals(getClient1ClientId(), e.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Keywords
        if (record.getPerson().getKeywords() != null) {
            Keywords keywords = record.getPerson().getKeywords();
            List<Keyword> list = keywords.getKeywords();
            if (list != null) {
                for (Keyword e : list) {
                    assertNotNull(e.getVisibility());
                    if (Visibility.PRIVATE.equals(e.getVisibility())) {
                        assertEquals(getClient1ClientId(), e.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Name
        if (record.getPerson().getName() != null) {
            Name name = record.getPerson().getName();
            if (Visibility.PRIVATE.equals(name.getVisibility())) {
                fail("Name is private");
            }
        }
        // Other names
        if (record.getPerson().getOtherNames() != null) {
            OtherNames otherNames = record.getPerson().getOtherNames();
            List<OtherName> list = otherNames.getOtherNames();
            if (list != null) {
                for (OtherName e : list) {
                    assertNotNull(e.getVisibility());
                    if (Visibility.PRIVATE.equals(e.getVisibility())) {
                        assertEquals(getClient1ClientId(), e.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Researcher urls
        if (record.getPerson().getResearcherUrls() != null) {
            ResearcherUrls rUrls = record.getPerson().getResearcherUrls();
            List<ResearcherUrl> list = rUrls.getResearcherUrls();
            if (list != null) {
                for (ResearcherUrl e : list) {
                    assertNotNull(e.getVisibility());
                    if (Visibility.PRIVATE.equals(e.getVisibility())) {
                        assertEquals(getClient1ClientId(), e.getSource().retrieveSourcePath());
                    }
                }
            }
        }
    }
}

Example 5 with PeerReviews

use of org.orcid.jaxb.model.v3.dev1.record.summary.PeerReviews in project ORCID-Source by ORCID.

the class PeerReviewManagerTest method testGroupPeerReviews_groupOnlyPublicPeerReviews2.

@Test
public void testGroupPeerReviews_groupOnlyPublicPeerReviews2() {
    PeerReviewSummary s1 = getPeerReviewSummary("public-peer-review-group-id-1", "ext-id-1", Visibility.PUBLIC);
    PeerReviewSummary s2 = getPeerReviewSummary("limited-peer-review-group-id-1", "ext-id-2", Visibility.LIMITED);
    PeerReviewSummary s3 = getPeerReviewSummary("private-peer-review-group-id-1", "ext-id-3", Visibility.PRIVATE);
    PeerReviewSummary s4 = getPeerReviewSummary("public-peer-review-group-id-1", "ext-id-4", Visibility.PUBLIC);
    PeerReviewSummary s5 = getPeerReviewSummary("limited-peer-review-group-id-1", "ext-id-5", Visibility.LIMITED);
    PeerReviewSummary s6 = getPeerReviewSummary("private-peer-review-group-id-1", "ext-id-6", Visibility.PRIVATE);
    PeerReviewSummary s7 = getPeerReviewSummary("public-peer-review-group-id-2", "ext-id-7", Visibility.PUBLIC);
    PeerReviewSummary s8 = getPeerReviewSummary("limited-peer-review-group-id-2", "ext-id-8", Visibility.LIMITED);
    PeerReviewSummary s9 = getPeerReviewSummary("private-peer-review-group-id-2", "ext-id-9", Visibility.PRIVATE);
    List<PeerReviewSummary> peerReviewList = Arrays.asList(s1, s2, s3, s4, s5, s6, s7, s8, s9);
    /**
     * They should be grouped as
     *
     * Group 1: ext-id-1 + ext-id-4
     * Group 2: ext-id-7
     */
    PeerReviews peerReviews = peerReviewManager.groupPeerReviews(peerReviewList, true);
    assertNotNull(peerReviews);
    assertEquals(2, peerReviews.getPeerReviewGroup().size());
    assertEquals(1, peerReviews.getPeerReviewGroup().get(0).getIdentifiers().getExternalIdentifier().size());
    assertEquals("public-peer-review-group-id-1", peerReviews.getPeerReviewGroup().get(0).getIdentifiers().getExternalIdentifier().get(0).getValue());
    assertEquals(2, peerReviews.getPeerReviewGroup().get(0).getPeerReviewSummary().size());
    assertThat(peerReviews.getPeerReviewGroup().get(0).getPeerReviewSummary().get(0).getExternalIdentifiers().getExternalIdentifier().get(0).getValue(), anyOf(is("ext-id-1"), is("ext-id-4")));
    assertThat(peerReviews.getPeerReviewGroup().get(0).getPeerReviewSummary().get(1).getExternalIdentifiers().getExternalIdentifier().get(0).getValue(), anyOf(is("ext-id-1"), is("ext-id-4")));
    assertEquals(1, peerReviews.getPeerReviewGroup().get(1).getIdentifiers().getExternalIdentifier().size());
    assertEquals("public-peer-review-group-id-2", peerReviews.getPeerReviewGroup().get(1).getIdentifiers().getExternalIdentifier().get(0).getValue());
    assertEquals(1, peerReviews.getPeerReviewGroup().get(1).getPeerReviewSummary().size());
    assertEquals("ext-id-7", peerReviews.getPeerReviewGroup().get(1).getPeerReviewSummary().get(0).getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
}