Examples with GroupableActivity org.orcid.jaxb.model.v3.dev1.record.GroupableActivity used on opensource projects

Example 1 with GroupableActivity

use of org.orcid.jaxb.model.v3.dev1.record.GroupableActivity in project ORCID-Source by ORCID.

the class PeerReviewManagerReadOnlyImpl method groupPeerReviews.

/**
 * Generate a grouped list of peer reviews with the given list of peer reviews
 *
 * @param peerReviews
 *          The list of peer reviews to group
 * @param justPublic
 *          Specify if we want to group only the public elements in the given list
 * @return PeerReviews element with the PeerReviewSummary elements grouped
 */
@Override
public PeerReviews groupPeerReviews(List<PeerReviewSummary> peerReviews, boolean justPublic) {
    ActivitiesGroupGenerator groupGenerator = new ActivitiesGroupGenerator();
    PeerReviews result = new PeerReviews();
    for (PeerReviewSummary peerReview : peerReviews) {
        if (justPublic && !peerReview.getVisibility().equals(org.orcid.jaxb.model.v3.dev1.common.Visibility.PUBLIC)) {
        // If it is just public and the funding is not public, just
        // ignore it
        } else {
            groupGenerator.group(peerReview);
        }
    }
    List<ActivitiesGroup> groups = groupGenerator.getGroups();
    for (ActivitiesGroup group : groups) {
        Set<GroupAble> groupKeys = group.getGroupKeys();
        Set<GroupableActivity> activities = group.getActivities();
        PeerReviewGroup peerReviewGroup = new PeerReviewGroup();
        // Fill the peer review groups with the external identifiers
        if (groupKeys == null || groupKeys.isEmpty()) {
            // Initialize the ids as an empty list
            peerReviewGroup.getIdentifiers().getExternalIdentifier();
        } else {
            for (GroupAble groupKey : groupKeys) {
                PeerReviewGroupKey key = (PeerReviewGroupKey) groupKey;
                ExternalID id = new ExternalID();
                // TODO: this is not nice
                id.setType(PeerReviewGroupKey.KEY_NAME);
                id.setValue(key.getGroupId());
                peerReviewGroup.getIdentifiers().getExternalIdentifier().add(id);
            }
        }
        // Fill the peer review group with the list of activities
        for (GroupableActivity activity : activities) {
            PeerReviewSummary peerReviewSummary = (PeerReviewSummary) activity;
            peerReviewGroup.getPeerReviewSummary().add(peerReviewSummary);
        }
        // Sort the peer reviews
        Collections.sort(peerReviewGroup.getPeerReviewSummary(), new GroupableActivityComparator());
        result.getPeerReviewGroup().add(peerReviewGroup);
    }
    return result;
}

Example 2 with GroupableActivity

use of org.orcid.jaxb.model.v3.dev1.record.GroupableActivity in project ORCID-Source by ORCID.

the class ProfileFundingManagerReadOnlyImpl method groupFundings.

/**
 * Generate a grouped list of funding with the given list of funding
 *
 * @param fundings
 *          The list of fundings to group
 * @param justPublic
 *          Specify if we want to group only the public elements in the given list
 * @return Fundings element with the FundingSummary elements grouped
 */
@Override
public Fundings groupFundings(List<FundingSummary> fundings, boolean justPublic) {
    ActivitiesGroupGenerator groupGenerator = new ActivitiesGroupGenerator();
    Fundings result = new Fundings();
    for (FundingSummary funding : fundings) {
        if (justPublic && !funding.getVisibility().equals(org.orcid.jaxb.model.v3.dev1.common.Visibility.PUBLIC)) {
        // If it is just public and the funding is not public, just
        // ignore it
        } else {
            groupGenerator.group(funding);
        }
    }
    List<ActivitiesGroup> groups = groupGenerator.getGroups();
    for (ActivitiesGroup group : groups) {
        Set<GroupAble> externalIdentifiers = group.getGroupKeys();
        Set<GroupableActivity> activities = group.getActivities();
        FundingGroup fundingGroup = new FundingGroup();
        // Fill the funding groups with the external identifiers
        if (externalIdentifiers == null || externalIdentifiers.isEmpty()) {
            // Initialize the ids as an empty list
            fundingGroup.getIdentifiers().getExternalIdentifier();
        } else {
            for (GroupAble extId : externalIdentifiers) {
                ExternalID fundingExtId = (ExternalID) extId;
                fundingGroup.getIdentifiers().getExternalIdentifier().add(fundingExtId.clone());
            }
        }
        // Fill the funding group with the list of activities
        for (GroupableActivity activity : activities) {
            FundingSummary fundingSummary = (FundingSummary) activity;
            fundingGroup.getFundingSummary().add(fundingSummary);
        }
        // Sort the fundings
        Collections.sort(fundingGroup.getFundingSummary(), new GroupableActivityComparator());
        result.getFundingGroup().add(fundingGroup);
    }
    return result;
}

Example 3 with GroupableActivity

use of org.orcid.jaxb.model.v3.dev1.record.GroupableActivity in project ORCID-Source by ORCID.

the class OrcidSecurityManagerImpl method filterExternalIdentifiers.

/**
 * Filter the group external identifiers to match the external identifiers
 * that belongs to the activities it have after filtering
 *
 * @param group
 *            The group we want to filter the external identifiers
 */
private void filterExternalIdentifiers(Group group) {
    // Iterate over every external identifier and check if it is still
    // present in the list of filtered elements
    ExternalIDs extIds = group.getIdentifiers();
    Iterator<ExternalID> extIdsIt = extIds.getExternalIdentifier().iterator();
    while (extIdsIt.hasNext()) {
        ExternalID extId = extIdsIt.next();
        boolean found = false;
        for (GroupableActivity summary : group.getActivities()) {
            if (summary.getExternalIdentifiers() != null) {
                if (summary.getExternalIdentifiers().getExternalIdentifier().contains(extId)) {
                    found = true;
                    break;
                }
            }
        }
        // If the ext id is not found, remove it from the list of ext ids
        if (!found) {
            extIdsIt.remove();
        }
    }
}

Example 4 with GroupableActivity

use of org.orcid.jaxb.model.v3.dev1.record.GroupableActivity in project ORCID-Source by ORCID.

the class ActivitiesGroup method merge.

public void merge(ActivitiesGroup group) {
    Set<GroupableActivity> otherActivities = group.getActivities();
    Set<GroupAble> otherKeys = group.getGroupKeys();
    // The incoming groups should always contain at least one key, we should not merge activities without keys
    if (otherKeys.isEmpty())
        throw new IllegalArgumentException("Unable to merge a group without external identifiers");
    // Merge group keys
    for (GroupAble otherKey : otherKeys) {
        if (!groupKeys.contains(otherKey))
            groupKeys.add(otherKey);
    }
    // Merge activities
    for (GroupableActivity activity : otherActivities) {
        // We assume the activity is not already there, anyway it is a set
        activities.add(activity);
    }
}

Example 5 with GroupableActivity

use of org.orcid.jaxb.model.v3.dev1.record.GroupableActivity in project ORCID-Source by ORCID.

the class ActivitiesGroup method belongsToGroup.

@Deprecated
public /**
 * This method is only used by tests to confirm accuracy of ActivitiesGroupGenerator and should not be used in production
 *
 * @param activity
 * @return
 */
boolean belongsToGroup(GroupableActivity activity) {
    boolean isPeerReview = PeerReviewSummary.class.isAssignableFrom(activity.getClass());
    // If there are no grouping keys
    if (groupKeys == null || groupKeys.isEmpty()) {
        if (isPeerReview) {
            return false;
        } else {
            if (activity.getExternalIdentifiers() == null || activity.getExternalIdentifiers().getExternalIdentifier() == null || activity.getExternalIdentifiers().getExternalIdentifier().isEmpty()) {
                // If the activity doesn't have any external identifier, check if the activity is in the group
                if (activities.contains(activity))
                    return true;
                else
                    return false;
            } else {
                // If any of the activities pass the grouping validation, the activity must belong to other group
                for (GroupAble extId : activity.getExternalIdentifiers().getExternalIdentifier()) {
                    if (extId.isGroupAble())
                        return false;
                }
                // If none of the activities pass the groupings validation, so, lets check if the group actually contains the activity
                if (activities.contains(activity))
                    return true;
                else
                    return false;
            }
        }
    }
    if (isPeerReview) {
        PeerReviewSummary peerReviewSummary = (PeerReviewSummary) activity;
        PeerReviewGroupKey prgk = new PeerReviewGroupKey();
        prgk.setGroupId(peerReviewSummary.getGroupId());
        if (prgk.isGroupAble()) {
            if (groupKeys.contains(prgk)) {
                return true;
            }
        }
    } else {
        // Check existing keys
        ExternalIdentifiersContainer container = activity.getExternalIdentifiers();
        if (container != null) {
            List<? extends GroupAble> extIds = (List<? extends GroupAble>) container.getExternalIdentifier();
            for (GroupAble extId : extIds) {
                // First check keys restrictions
                if (extId.isGroupAble()) {
                    // If any of the keys already exists on this group, return true
                    if (containsKey(extId))
                        return true;
                }
            }
        }
    }
    return false;
}