Examples with ProfileEntity org.orcid.persistence.jpa.entities.ProfileEntity used on opensource projects

Example 51 with ProfileEntity

use of org.orcid.persistence.jpa.entities.ProfileEntity in project ORCID-Source by ORCID.

the class PeerReviewManagerImpl method updatePeerReview.

@Override
public PeerReview updatePeerReview(String orcid, PeerReview peerReview, boolean isApiRequest) {
    PeerReviewEntity existingEntity = peerReviewDao.getPeerReview(orcid, peerReview.getPutCode());
    Visibility originalVisibility = existingEntity.getVisibility();
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    //Save the original source
    String existingSourceId = existingEntity.getSourceId();
    String existingClientSourceId = existingEntity.getClientSourceId();
    // If request comes from the API perform validations
    if (isApiRequest) {
        activityValidator.validatePeerReview(peerReview, sourceEntity, false, isApiRequest, originalVisibility);
        validateGroupId(peerReview);
        List<PeerReview> existingReviews = this.findPeerReviews(orcid, System.currentTimeMillis());
        for (PeerReview existing : existingReviews) {
            // Dont compare the updated peer review with the DB version
            if (!existing.getPutCode().equals(peerReview.getPutCode())) {
                activityValidator.checkExternalIdentifiersForDuplicates(peerReview.getExternalIdentifiers(), existing.getExternalIdentifiers(), existing.getSource(), sourceManager.retrieveSourceEntity());
            }
        }
    } else {
        //check vocab of external identifiers
        externalIDValidator.validateWorkOrPeerReview(peerReview.getExternalIdentifiers());
        externalIDValidator.validateWorkOrPeerReview(peerReview.getSubjectExternalIdentifier());
    }
    PeerReviewEntity updatedEntity = new PeerReviewEntity();
    orcidSecurityManager.checkSource(existingEntity);
    jpaJaxbPeerReviewAdapter.toPeerReviewEntity(peerReview, updatedEntity);
    updatedEntity.setProfile(new ProfileEntity(orcid));
    updatedEntity.setVisibility(originalVisibility);
    //Be sure it doesn't overwrite the source
    updatedEntity.setSourceId(existingSourceId);
    updatedEntity.setClientSourceId(existingClientSourceId);
    OrgEntity updatedOrganization = orgManager.getOrgEntity(peerReview);
    updatedEntity.setOrg(updatedOrganization);
    updatedEntity = peerReviewDao.merge(updatedEntity);
    peerReviewDao.flush();
    notificationManager.sendAmendEmail(orcid, AmendedSection.PEER_REVIEW, createItem(updatedEntity));
    return jpaJaxbPeerReviewAdapter.toPeerReview(updatedEntity);
}

Example 52 with ProfileEntity

use of org.orcid.persistence.jpa.entities.ProfileEntity in project ORCID-Source by ORCID.

the class ContributorUtils method filterContributorPrivateData.

public void filterContributorPrivateData(Funding funding) {
    if (funding.getContributors() != null && funding.getContributors().getContributor() != null) {
        for (FundingContributor contributor : funding.getContributors().getContributor()) {
            contributor.setContributorEmail(null);
            if (!PojoUtil.isEmpty(contributor.getContributorOrcid())) {
                String contributorOrcid = contributor.getContributorOrcid().getPath();
                if (profileEntityManager.orcidExists(contributorOrcid)) {
                    // contributor is an ORCID user - visibility of user's
                    // name in record must be taken into account
                    ProfileEntity profileEntity = profileEntityCacheManager.retrieve(contributorOrcid);
                    String publicContributorCreditName = cacheManager.getPublicCreditName(profileEntity);
                    CreditName creditName = new CreditName(publicContributorCreditName != null ? publicContributorCreditName : "");
                    contributor.setCreditName(creditName);
                }
            }
        }
    }
}

Example 53 with ProfileEntity

use of org.orcid.persistence.jpa.entities.ProfileEntity in project ORCID-Source by ORCID.

the class SecurityContextTestUtils method setUpSecurityContext.

public static void setUpSecurityContext(String userOrcid, String clientId, ScopePathType... scopePathTypes) {
    SecurityContextImpl securityContext = new SecurityContextImpl();
    OrcidOAuth2Authentication mockedAuthentication = mock(OrcidOAuth2Authentication.class);
    securityContext.setAuthentication(mockedAuthentication);
    SecurityContextHolder.setContext(securityContext);
    ProfileEntity userProfileEntity = new ProfileEntity(userOrcid);
    when(mockedAuthentication.getPrincipal()).thenReturn(userProfileEntity);
    Authentication userAuthentication = mock(Authentication.class);
    when(userAuthentication.getPrincipal()).thenReturn(userProfileEntity);
    when(mockedAuthentication.getUserAuthentication()).thenReturn(userAuthentication);
    Set<String> scopes = new HashSet<String>();
    if (scopePathTypes != null) {
        for (ScopePathType scopePathType : scopePathTypes) {
            scopes.add(scopePathType.value());
        }
    }
    OAuth2Request authorizationRequest = new OAuth2Request(Collections.<String, String>emptyMap(), clientId, Collections.<GrantedAuthority>emptyList(), true, scopes, Collections.<String>emptySet(), null, Collections.<String>emptySet(), Collections.<String, Serializable>emptyMap());
    when(mockedAuthentication.getOAuth2Request()).thenReturn(authorizationRequest);
    when(mockedAuthentication.isAuthenticated()).thenReturn(true);
}

Example 54 with ProfileEntity

use of org.orcid.persistence.jpa.entities.ProfileEntity in project ORCID-Source by ORCID.

the class SecurityContextTestUtils method setUpSecurityContextForClientOnly.

public static void setUpSecurityContextForClientOnly(String clientId, Set<String> scopes) {
    SecurityContextImpl securityContext = new SecurityContextImpl();
    OrcidOAuth2Authentication mockedAuthentication = mock(OrcidOAuth2Authentication.class);
    securityContext.setAuthentication(mockedAuthentication);
    SecurityContextHolder.setContext(securityContext);
    when(mockedAuthentication.getPrincipal()).thenReturn(new ProfileEntity(clientId));
    when(mockedAuthentication.isClientOnly()).thenReturn(true);
    OAuth2Request authorizationRequest = new OAuth2Request(Collections.<String, String>emptyMap(), clientId, Collections.<GrantedAuthority>emptyList(), true, scopes, Collections.<String>emptySet(), null, Collections.<String>emptySet(), Collections.<String, Serializable>emptyMap());
    when(mockedAuthentication.getOAuth2Request()).thenReturn(authorizationRequest);
    when(mockedAuthentication.isAuthenticated()).thenReturn(true);
    when(mockedAuthentication.getName()).thenReturn(clientId);
}

Example 55 with ProfileEntity

use of org.orcid.persistence.jpa.entities.ProfileEntity in project ORCID-Source by ORCID.

the class JpaJaxbAddressAdapterTest method getAddressEntity.

private AddressEntity getAddressEntity() {
    AddressEntity result = new AddressEntity();
    result.setId(Long.valueOf(1));
    result.setDateCreated(new Date());
    result.setLastModified(new Date());
    result.setIso2Country(Iso3166Country.US);
    result.setUser(new ProfileEntity("0000-0000-0000-0000"));
    result.setVisibility(Visibility.PUBLIC);
    result.setClientSourceId("APP-000000001");
    return result;
}