Examples with ProfileEntity org.orcid.persistence.jpa.entities.ProfileEntity used on opensource projects

Example 76 with ProfileEntity

use of org.orcid.persistence.jpa.entities.ProfileEntity in project ORCID-Source by ORCID.

the class WorkspaceController method getOtherNamesFormJson.

@RequestMapping(value = "/my-orcid/otherNamesForms.json", method = RequestMethod.GET)
@ResponseBody
public OtherNamesForm getOtherNamesFormJson(HttpServletRequest request) throws NoSuchRequestHandlingMethodException {
    long lastModifiedTime = getLastModifiedTime(getCurrentUserOrcid());
    OtherNames otherNames = otherNameManager.getOtherNames(getCurrentUserOrcid(), lastModifiedTime);
    OtherNamesForm form = OtherNamesForm.valueOf(otherNames);
    //Set the default visibility
    ProfileEntity profile = profileEntityCacheManager.retrieve(getCurrentUserOrcid());
    if (profile != null && profile.getActivitiesVisibilityDefault() != null) {
        form.setVisibility(Visibility.valueOf(profile.getActivitiesVisibilityDefault()));
    }
    return form;
}

Example 77 with ProfileEntity

use of org.orcid.persistence.jpa.entities.ProfileEntity in project ORCID-Source by ORCID.

the class WorkManagerImpl method createWork.

@Override
@Transactional
public Work createWork(String orcid, Work work, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    if (isApiRequest) {
        activityValidator.validateWork(work, sourceEntity, true, isApiRequest, null);
        // duplicates
        if (!sourceEntity.getSourceId().equals(orcid)) {
            long lastModifiedTime = getLastModified(orcid);
            List<Work> existingWorks = this.findWorks(orcid, lastModifiedTime);
            if (existingWorks != null) {
                for (Work existing : existingWorks) {
                    activityValidator.checkExternalIdentifiersForDuplicates(work.getExternalIdentifiers(), existing.getExternalIdentifiers(), existing.getSource(), sourceEntity);
                }
            }
        }
    } else {
        // validate external ID vocab
        externalIDValidator.validateWorkOrPeerReview(work.getExternalIdentifiers());
    }
    WorkEntity workEntity = jpaJaxbWorkAdapter.toWorkEntity(work);
    ProfileEntity profile = profileEntityCacheManager.retrieve(orcid);
    workEntity.setProfile(profile);
    workEntity.setAddedToProfileDate(new Date());
    // Set source id 
    if (sourceEntity.getSourceProfile() != null) {
        workEntity.setSourceId(sourceEntity.getSourceProfile().getId());
    }
    if (sourceEntity.getSourceClient() != null) {
        workEntity.setClientSourceId(sourceEntity.getSourceClient().getId());
    }
    setIncomingWorkPrivacy(workEntity, profile);
    DisplayIndexCalculatorHelper.setDisplayIndexOnNewEntity(workEntity, isApiRequest);
    workDao.persist(workEntity);
    workDao.flush();
    notificationManager.sendAmendEmail(orcid, AmendedSection.WORK, createItem(workEntity));
    return jpaJaxbWorkAdapter.toWork(workEntity);
}

Example 78 with ProfileEntity

use of org.orcid.persistence.jpa.entities.ProfileEntity in project ORCID-Source by ORCID.

the class ResearcherUrlManagerImpl method updateResearcherUrls.

/**
     * Update the researcher urls associated with a specific account
     * 
     * @param orcid
     * @param researcherUrls
     * */
@Override
@Transactional
public ResearcherUrls updateResearcherUrls(String orcid, ResearcherUrls researcherUrls) {
    List<ResearcherUrlEntity> existingEntities = researcherUrlDao.getResearcherUrls(orcid, getLastModified(orcid));
    //Delete the deleted ones
    for (ResearcherUrlEntity existingEntity : existingEntities) {
        boolean deleteMe = true;
        if (researcherUrls.getResearcherUrls() != null) {
            for (ResearcherUrl updatedOrNew : researcherUrls.getResearcherUrls()) {
                if (existingEntity.getId().equals(updatedOrNew.getPutCode())) {
                    deleteMe = false;
                    break;
                }
            }
        }
        if (deleteMe) {
            try {
                researcherUrlDao.deleteResearcherUrl(existingEntity.getProfile().getId(), existingEntity.getId());
            } catch (Exception e) {
                throw new ApplicationException("Unable to delete researcher url " + existingEntity.getId(), e);
            }
        }
    }
    // Update or create new
    if (researcherUrls != null && researcherUrls.getResearcherUrls() != null) {
        for (ResearcherUrl updatedOrNew : researcherUrls.getResearcherUrls()) {
            if (updatedOrNew.getPutCode() != null) {
                //Update the existing ones
                for (ResearcherUrlEntity existingEntity : existingEntities) {
                    if (existingEntity.getId().equals(updatedOrNew.getPutCode())) {
                        existingEntity.setLastModified(new Date());
                        existingEntity.setVisibility(updatedOrNew.getVisibility());
                        existingEntity.setUrl(updatedOrNew.getUrl().getValue());
                        existingEntity.setUrlName(updatedOrNew.getUrlName());
                        existingEntity.setDisplayIndex(updatedOrNew.getDisplayIndex());
                        researcherUrlDao.merge(existingEntity);
                    }
                }
            } else {
                //Add the new ones
                ResearcherUrlEntity newResearcherUrl = jpaJaxbResearcherUrlAdapter.toResearcherUrlEntity(updatedOrNew);
                SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
                ProfileEntity profile = new ProfileEntity(orcid);
                newResearcherUrl.setUser(profile);
                newResearcherUrl.setDateCreated(new Date());
                newResearcherUrl.setLastModified(new Date());
                if (sourceEntity.getSourceProfile() != null) {
                    newResearcherUrl.setSourceId(sourceEntity.getSourceProfile().getId());
                }
                if (sourceEntity.getSourceClient() != null) {
                    newResearcherUrl.setClientSourceId(sourceEntity.getSourceClient().getId());
                }
                newResearcherUrl.setVisibility(updatedOrNew.getVisibility());
                newResearcherUrl.setDisplayIndex(updatedOrNew.getDisplayIndex());
                researcherUrlDao.persist(newResearcherUrl);
            }
        }
    }
    return researcherUrls;
}

Example 79 with ProfileEntity

use of org.orcid.persistence.jpa.entities.ProfileEntity in project ORCID-Source by ORCID.

the class ResearcherUrlManagerImpl method createResearcherUrl.

@Override
public ResearcherUrl createResearcherUrl(String orcid, ResearcherUrl researcherUrl, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    // Validate the researcher url
    PersonValidator.validateResearcherUrl(researcherUrl, sourceEntity, true, isApiRequest, null);
    // Validate it is not duplicated
    List<ResearcherUrlEntity> existingResearcherUrls = researcherUrlDao.getResearcherUrls(orcid, getLastModified(orcid));
    for (ResearcherUrlEntity existing : existingResearcherUrls) {
        if (isDuplicated(existing, researcherUrl, sourceEntity)) {
            Map<String, String> params = new HashMap<String, String>();
            params.put("type", "researcher-url");
            params.put("value", researcherUrl.getUrlName());
            throw new OrcidDuplicatedElementException(params);
        }
    }
    ResearcherUrlEntity newEntity = jpaJaxbResearcherUrlAdapter.toResearcherUrlEntity(researcherUrl);
    ProfileEntity profile = profileEntityCacheManager.retrieve(orcid);
    newEntity.setUser(profile);
    newEntity.setDateCreated(new Date());
    //Set the source
    if (sourceEntity.getSourceProfile() != null) {
        newEntity.setSourceId(sourceEntity.getSourceProfile().getId());
    }
    if (sourceEntity.getSourceClient() != null) {
        newEntity.setClientSourceId(sourceEntity.getSourceClient().getId());
    }
    setIncomingPrivacy(newEntity, profile);
    DisplayIndexCalculatorHelper.setDisplayIndexOnNewEntity(newEntity, isApiRequest);
    researcherUrlDao.persist(newEntity);
    return jpaJaxbResearcherUrlAdapter.toResearcherUrl(newEntity);
}

Example 80 with ProfileEntity

use of org.orcid.persistence.jpa.entities.ProfileEntity in project ORCID-Source by ORCID.

the class OrcidRandomValueTokenServicesImpl method refreshAccessToken.

@Override
@Transactional
public OAuth2AccessToken refreshAccessToken(String refreshTokenValue, TokenRequest tokenRequest) throws AuthenticationException {
    String parentTokenValue = tokenRequest.getRequestParameters().get(OrcidOauth2Constants.AUTHORIZATION);
    String clientId = tokenRequest.getClientId();
    String scopes = tokenRequest.getRequestParameters().get(OAuth2Utils.SCOPE);
    Long expiresIn = tokenRequest.getRequestParameters().containsKey(OrcidOauth2Constants.EXPIRES_IN) ? Long.valueOf(tokenRequest.getRequestParameters().get(OrcidOauth2Constants.EXPIRES_IN)) : 0L;
    Boolean revokeOld = tokenRequest.getRequestParameters().containsKey(OrcidOauth2Constants.REVOKE_OLD) ? Boolean.valueOf(tokenRequest.getRequestParameters().get(OrcidOauth2Constants.REVOKE_OLD)) : true;
    // Check if the refresh token is enabled
    if (!customSupportRefreshToken) {
        throw new InvalidGrantException("Invalid refresh token: " + refreshTokenValue);
    }
    // Check if the client support refresh token
    ClientDetailsEntity clientDetails = clientDetailsEntityCacheManager.retrieve(clientId);
    if (!clientDetails.getAuthorizedGrantTypes().contains(OrcidOauth2Constants.REFRESH_TOKEN)) {
        throw new InvalidGrantException("Client " + clientId + " doesnt have refresh token enabled");
    }
    OrcidOauth2TokenDetail parentToken = orcidOauth2TokenDetailDao.findByTokenValue(parentTokenValue);
    ProfileEntity profileEntity = new ProfileEntity(parentToken.getProfile().getId());
    OrcidOauth2TokenDetail newToken = new OrcidOauth2TokenDetail();
    newToken.setApproved(true);
    newToken.setClientDetailsId(clientId);
    newToken.setDateCreated(new Date());
    newToken.setLastModified(new Date());
    newToken.setPersistent(parentToken.isPersistent());
    newToken.setProfile(profileEntity);
    newToken.setRedirectUri(parentToken.getRedirectUri());
    newToken.setRefreshTokenValue(UUID.randomUUID().toString());
    newToken.setResourceId(parentToken.getResourceId());
    newToken.setResponseType(parentToken.getResponseType());
    newToken.setState(parentToken.getState());
    newToken.setTokenDisabled(false);
    if (expiresIn <= 0) {
        //If expiresIn is 0 or less, set the parent token 
        newToken.setTokenExpiration(parentToken.getTokenExpiration());
    } else {
        //Assumes expireIn already contains the real expired time expressed in millis 
        newToken.setTokenExpiration(new Date(expiresIn));
    }
    newToken.setTokenType(parentToken.getTokenType());
    newToken.setTokenValue(UUID.randomUUID().toString());
    newToken.setVersion(parentToken.getVersion());
    if (PojoUtil.isEmpty(scopes)) {
        newToken.setScope(parentToken.getScope());
    } else {
        newToken.setScope(scopes);
    }
    //Generate an authentication object to be able to generate the authentication key
    Set<String> scopesSet = OAuth2Utils.parseParameterList(newToken.getScope());
    AuthorizationRequest request = new AuthorizationRequest(clientId, scopesSet);
    request.setApproved(true);
    Authentication authentication = new OrcidOauth2UserAuthentication(profileEntity, true);
    OrcidOAuth2Authentication orcidAuthentication = new OrcidOAuth2Authentication(request, authentication, newToken.getTokenValue());
    newToken.setAuthenticationKey(authenticationKeyGenerator.extractKey(orcidAuthentication));
    // Store the new token and return it
    orcidOauth2TokenDetailDao.persist(newToken);
    // Revoke the old token when required
    if (revokeOld) {
        orcidOauth2TokenDetailDao.disableAccessToken(parentTokenValue);
    }
    // Save the changes
    orcidOauth2TokenDetailDao.flush();
    // and return it                
    return toOAuth2AccessToken(newToken);
}