Examples with SourceEntity org.orcid.persistence.jpa.entities.SourceEntity used on opensource projects

Example 11 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class OrcidSecurityManagerImpl method checkProfile.

/**
     * Checks a record status and throw an exception indicating if the profile
     * have any of the following conditions: - The record is not claimed and is
     * not old enough nor being accessed by its creator - It is locked - It is
     * deprecated - It is deactivated
     * 
     * @throws OrcidDeprecatedException
     *             in case the account is deprecated
     * @throws OrcidNotClaimedException
     *             in case the account is not claimed
     * @throws LockedException
     *             in the case the account is locked
     */
@Override
public void checkProfile(String orcid) throws NoResultException, OrcidDeprecatedException, OrcidNotClaimedException, LockedException {
    ProfileEntity profile = null;
    try {
        profile = profileEntityCacheManager.retrieve(orcid);
    } catch (IllegalArgumentException e) {
        throw new NoResultException();
    }
    // Check if the user record is deprecated
    if (profile.getPrimaryRecord() != null) {
        StringBuffer primary = new StringBuffer(baseUrl).append("/").append(profile.getPrimaryRecord().getId());
        Map<String, String> params = new HashMap<String, String>();
        params.put(OrcidDeprecatedException.ORCID, primary.toString());
        if (profile.getDeprecatedDate() != null) {
            XMLGregorianCalendar calendar = DateUtils.convertToXMLGregorianCalendar(profile.getDeprecatedDate());
            params.put(OrcidDeprecatedException.DEPRECATED_DATE, calendar.toString());
        }
        throw new OrcidDeprecatedException(params);
    }
    // Check if the profile is not claimed and not old enough
    if ((profile.getClaimed() == null || Boolean.FALSE.equals(profile.getClaimed())) && !isOldEnough(profile)) {
        // Let the creator access the profile even if it is not claimed and
        // not old enough
        SourceEntity currentSourceEntity = sourceManager.retrieveSourceEntity();
        String profileSource = profile.getSource() == null ? null : profile.getSource().getSourceId();
        String currentSource = currentSourceEntity == null ? null : currentSourceEntity.getSourceId();
        // the profile source, throw an exception
        if (profileSource == null || !Objects.equals(profileSource, currentSource)) {
            throw new OrcidNotClaimedException();
        }
    }
    // Check if the record is locked
    if (!profile.isAccountNonLocked()) {
        LockedException lockedException = new LockedException();
        lockedException.setOrcid(profile.getId());
        throw lockedException;
    }
}

Example 12 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class ProfileFundingManagerImpl method createFunding.

/**
     * Add a new funding to the given user
     * @param orcid
     *          The user to add the funding
     * @param funding
     *          The funding to add
     * @return the added funding                  
     * */
@Override
@Transactional
public Funding createFunding(String orcid, Funding funding, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    activityValidator.validateFunding(funding, sourceEntity, true, isApiRequest, null);
    //Check for duplicates
    List<ProfileFundingEntity> existingFundings = profileFundingDao.getByUser(orcid);
    List<Funding> fundings = jpaJaxbFundingAdapter.toFunding(existingFundings);
    if (fundings != null && isApiRequest) {
        for (Funding exstingFunding : fundings) {
            activityValidator.checkFundingExternalIdentifiersForDuplicates(funding.getExternalIdentifiers(), exstingFunding.getExternalIdentifiers(), exstingFunding.getSource(), sourceEntity);
        }
    }
    ProfileFundingEntity profileFundingEntity = jpaJaxbFundingAdapter.toProfileFundingEntity(funding);
    //Updates the give organization with the latest organization from database
    OrgEntity updatedOrganization = orgManager.getOrgEntity(funding);
    profileFundingEntity.setOrg(updatedOrganization);
    //Set the source
    if (sourceEntity.getSourceProfile() != null) {
        profileFundingEntity.setSourceId(sourceEntity.getSourceProfile().getId());
    }
    if (sourceEntity.getSourceClient() != null) {
        profileFundingEntity.setClientSourceId(sourceEntity.getSourceClient().getId());
    }
    ProfileEntity profile = profileEntityCacheManager.retrieve(orcid);
    profileFundingEntity.setProfile(profile);
    setIncomingWorkPrivacy(profileFundingEntity, profile);
    DisplayIndexCalculatorHelper.setDisplayIndexOnNewEntity(profileFundingEntity, isApiRequest);
    profileFundingDao.persist(profileFundingEntity);
    profileFundingDao.flush();
    if (isApiRequest) {
        notificationManager.sendAmendEmail(orcid, AmendedSection.FUNDING, createItem(profileFundingEntity));
    }
    return jpaJaxbFundingAdapter.toFunding(profileFundingEntity);
}

Example 13 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class ProfileFundingManagerImpl method updateFunding.

/**
     * Updates a funding that belongs to the given user
     * @param orcid
     *          The user
     * @param funding
     *          The funding to update
     * @return the updated funding                  
     * */
@Override
public Funding updateFunding(String orcid, Funding funding, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    ProfileFundingEntity pfe = profileFundingDao.getProfileFunding(orcid, funding.getPutCode());
    Visibility originalVisibility = pfe.getVisibility();
    //Save the original source
    String existingSourceId = pfe.getSourceId();
    String existingClientSourceId = pfe.getClientSourceId();
    activityValidator.validateFunding(funding, sourceEntity, false, isApiRequest, originalVisibility);
    if (!isApiRequest) {
        List<ProfileFundingEntity> existingFundings = profileFundingDao.getByUser(orcid);
        for (ProfileFundingEntity existingFunding : existingFundings) {
            Funding existing = jpaJaxbFundingAdapter.toFunding(existingFunding);
            if (!existing.getPutCode().equals(funding.getPutCode())) {
                activityValidator.checkFundingExternalIdentifiersForDuplicates(funding.getExternalIdentifiers(), existing.getExternalIdentifiers(), existing.getSource(), sourceEntity);
            }
        }
    }
    orcidSecurityManager.checkSource(pfe);
    jpaJaxbFundingAdapter.toProfileFundingEntity(funding, pfe);
    pfe.setVisibility(originalVisibility);
    //Be sure it doesn't overwrite the source
    pfe.setSourceId(existingSourceId);
    pfe.setClientSourceId(existingClientSourceId);
    //Updates the give organization with the latest organization from database, or, create a new one
    OrgEntity updatedOrganization = orgManager.getOrgEntity(funding);
    pfe.setOrg(updatedOrganization);
    pfe = profileFundingDao.merge(pfe);
    profileFundingDao.flush();
    if (!isApiRequest) {
        notificationManager.sendAmendEmail(orcid, AmendedSection.FUNDING, createItem(pfe));
    }
    return jpaJaxbFundingAdapter.toFunding(pfe);
}

Example 14 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class OrgManagerImpl method createUpdate.

@Override
public OrgEntity createUpdate(OrgEntity org) {
    OrgEntity existingOrg = orgDao.findByNameCityRegionAndCountry(org.getName(), org.getCity(), org.getRegion(), org.getCountry());
    if (existingOrg != null) {
        return existingOrg;
    }
    String sourceId = sourceManager.retrieveSourceOrcid();
    org.setSource(new SourceEntity(sourceId));
    orgDao.persist(org);
    return org;
}

Example 15 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class OtherNameManagerImpl method updateOtherName.

@Override
@Transactional
public OtherName updateOtherName(String orcid, Long putCode, OtherName otherName, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    OtherNameEntity updatedOtherNameEntity = otherNameDao.getOtherName(orcid, putCode);
    Visibility originalVisibility = Visibility.fromValue(updatedOtherNameEntity.getVisibility().value());
    //Save the original source
    String existingSourceId = updatedOtherNameEntity.getSourceId();
    String existingClientSourceId = updatedOtherNameEntity.getClientSourceId();
    // Validate the other name
    PersonValidator.validateOtherName(otherName, sourceEntity, false, isApiRequest, originalVisibility);
    // Validate it is not duplicated
    List<OtherNameEntity> existingOtherNames = otherNameDao.getOtherNames(orcid, getLastModified(orcid));
    for (OtherNameEntity existing : existingOtherNames) {
        if (isDuplicated(existing, otherName, sourceEntity)) {
            Map<String, String> params = new HashMap<String, String>();
            params.put("type", "otherName");
            params.put("value", otherName.getContent());
            throw new OrcidDuplicatedElementException(params);
        }
    }
    orcidSecurityManager.checkSource(updatedOtherNameEntity);
    jpaJaxbOtherNameAdapter.toOtherNameEntity(otherName, updatedOtherNameEntity);
    updatedOtherNameEntity.setLastModified(new Date());
    //Be sure it doesn't overwrite the source
    updatedOtherNameEntity.setSourceId(existingSourceId);
    updatedOtherNameEntity.setClientSourceId(existingClientSourceId);
    otherNameDao.merge(updatedOtherNameEntity);
    return jpaJaxbOtherNameAdapter.toOtherName(updatedOtherNameEntity);
}