Examples with ParticipantCohortAnnotation org.pmiops.workbench.db.model.ParticipantCohortAnnotation used on opensource projects

Example 11 with ParticipantCohortAnnotation

use of org.pmiops.workbench.db.model.ParticipantCohortAnnotation in project workbench by all-of-us.

the class ParticipantCohortAnnotationDaoTest method findByCohortReviewIdAndCohortAnnotationDefinitionIdAndParticipantId.

@Test
public void findByCohortReviewIdAndCohortAnnotationDefinitionIdAndParticipantId() throws Exception {
    ParticipantCohortAnnotation expectedPCA = new ParticipantCohortAnnotation().annotationId(annotationId).cohortAnnotationDefinitionId(cohortAnnotationDefinitionId).cohortReviewId(cohortReviewId).participantId(participantId).annotationValueBoolean(Boolean.TRUE);
    ParticipantCohortAnnotation actualPCA = participantCohortAnnotationDao.findByCohortReviewIdAndCohortAnnotationDefinitionIdAndParticipantId(cohortReviewId, cohortAnnotationDefinitionId, participantId);
    assertEquals(expectedPCA, actualPCA);
}

Example 12 with ParticipantCohortAnnotation

use of org.pmiops.workbench.db.model.ParticipantCohortAnnotation in project workbench by all-of-us.

the class CohortReviewServiceImplTest method saveParticipantCohortAnnotationNotFoundCohortAnnotationDefinition.

@Test
public void saveParticipantCohortAnnotationNotFoundCohortAnnotationDefinition() throws Exception {
    long cohortAnnotationDefinitionId = 1;
    long cohortReviewId = 1;
    long participantId = 1;
    ParticipantCohortAnnotation participantCohortAnnotation = new ParticipantCohortAnnotation().annotationValueBoolean(Boolean.TRUE).cohortAnnotationDefinitionId(cohortAnnotationDefinitionId).cohortReviewId(cohortReviewId).participantId(participantId);
    when(cohortAnnotationDefinitionDao.findOne(cohortAnnotationDefinitionId)).thenReturn(null);
    try {
        cohortReviewService.saveParticipantCohortAnnotation(cohortReviewId, participantCohortAnnotation);
        fail("Should have thrown NotFoundExcpetion!");
    } catch (NotFoundException e) {
        assertEquals("Not Found: No cohort annotation definition found for id: " + cohortAnnotationDefinitionId, e.getMessage());
    }
    verify(cohortAnnotationDefinitionDao).findOne(cohortAnnotationDefinitionId);
    verifyNoMoreMockInteractions();
}

Example 13 with ParticipantCohortAnnotation

use of org.pmiops.workbench.db.model.ParticipantCohortAnnotation in project workbench by all-of-us.

the class CohortReviewServiceImplTest method updateParticipantCohortAnnotationModify.

@Test
public void updateParticipantCohortAnnotationModify() throws Exception {
    long annotationId = 1;
    long cohortAnnotationDefinitionId = 1;
    long cohortReviewId = 1;
    long participantId = 1;
    ParticipantCohortAnnotation participantCohortAnnotation = new ParticipantCohortAnnotation().annotationValueBoolean(Boolean.TRUE).cohortAnnotationDefinitionId(cohortAnnotationDefinitionId).cohortReviewId(cohortReviewId).participantId(participantId);
    ModifyParticipantCohortAnnotationRequest modifyRequest = new ModifyParticipantCohortAnnotationRequest().annotationValueBoolean(Boolean.FALSE);
    CohortAnnotationDefinition cohortAnnotationDefinition = createCohortAnnotationDefinition(cohortAnnotationDefinitionId, AnnotationType.BOOLEAN);
    when(participantCohortAnnotationDao.findByAnnotationIdAndCohortReviewIdAndParticipantId(annotationId, cohortReviewId, participantId)).thenReturn(participantCohortAnnotation);
    when(cohortAnnotationDefinitionDao.findOne(cohortAnnotationDefinitionId)).thenReturn(cohortAnnotationDefinition);
    cohortReviewService.updateParticipantCohortAnnotation(annotationId, cohortReviewId, participantId, modifyRequest);
    verify(participantCohortAnnotationDao).findByAnnotationIdAndCohortReviewIdAndParticipantId(annotationId, cohortReviewId, participantId);
    verify(cohortAnnotationDefinitionDao).findOne(cohortAnnotationDefinitionId);
    verifyNoMoreMockInteractions();
}

Example 14 with ParticipantCohortAnnotation

use of org.pmiops.workbench.db.model.ParticipantCohortAnnotation in project workbench by all-of-us.

the class CohortReviewServiceImplTest method saveParticipantCohortAnnotationBadRequest.

@Test
public void saveParticipantCohortAnnotationBadRequest() throws Exception {
    long cohortAnnotationDefinitionId = 1;
    long cohortReviewId = 1;
    long participantId = 1;
    ParticipantCohortAnnotation participantCohortAnnotation = new ParticipantCohortAnnotation().cohortAnnotationDefinitionId(cohortAnnotationDefinitionId).cohortReviewId(cohortReviewId).participantId(participantId);
    assertParticipantCohortAnnotationBadRequest(participantCohortAnnotation, createCohortAnnotationDefinition(cohortAnnotationDefinitionId, AnnotationType.BOOLEAN));
    assertParticipantCohortAnnotationBadRequest(participantCohortAnnotation, createCohortAnnotationDefinition(cohortAnnotationDefinitionId, AnnotationType.STRING));
    assertParticipantCohortAnnotationBadRequest(participantCohortAnnotation, createCohortAnnotationDefinition(cohortAnnotationDefinitionId, AnnotationType.INTEGER));
    assertParticipantCohortAnnotationBadRequest(participantCohortAnnotation, createCohortAnnotationDefinition(cohortAnnotationDefinitionId, AnnotationType.STRING));
    assertParticipantCohortAnnotationBadRequest(participantCohortAnnotation, createCohortAnnotationDefinition(cohortAnnotationDefinitionId, AnnotationType.ENUM));
}

Example 15 with ParticipantCohortAnnotation

use of org.pmiops.workbench.db.model.ParticipantCohortAnnotation in project workbench by all-of-us.

the class CohortReviewServiceImpl method updateParticipantCohortAnnotation.

@Override
public ParticipantCohortAnnotation updateParticipantCohortAnnotation(Long annotationId, Long cohortReviewId, Long participantId, ModifyParticipantCohortAnnotationRequest modifyRequest) {
    ParticipantCohortAnnotation participantCohortAnnotation = participantCohortAnnotationDao.findByAnnotationIdAndCohortReviewIdAndParticipantId(annotationId, cohortReviewId, participantId);
    if (participantCohortAnnotation == null) {
        throw new NotFoundException(String.format("Not Found: Participant Cohort Annotation does not exist for annotationId: %s, cohortReviewId: %s, participantId: %s", annotationId, cohortReviewId, participantId));
    }
    participantCohortAnnotation.annotationValueString(modifyRequest.getAnnotationValueString()).annotationValueEnum(modifyRequest.getAnnotationValueEnum()).annotationValueDateString(modifyRequest.getAnnotationValueDate()).annotationValueBoolean(modifyRequest.getAnnotationValueBoolean()).annotationValueInteger(modifyRequest.getAnnotationValueInteger());
    CohortAnnotationDefinition cohortAnnotationDefinition = findCohortAnnotationDefinition(participantCohortAnnotation.getCohortAnnotationDefinitionId());
    validateParticipantCohortAnnotation(participantCohortAnnotation, cohortAnnotationDefinition);
    return participantCohortAnnotationDao.save(participantCohortAnnotation);
}