Examples with FieldSetMapper org.powo.job.dwc.taxon.FieldSetMapper used on opensource projects

Example 1 with FieldSetMapper

use of org.powo.job.dwc.taxon.FieldSetMapper in project powop by RBGKew.

the class TaxonParsingTest method setUp.

@Before
public final void setUp() throws Exception {
    String[] names = new String[] { "http://rs.tdwg.org/dwc/terms/taxonID", "http://rs.tdwg.org/dwc/terms/scientificName", "http://rs.tdwg.org/dwc/terms/scientificNameID", "http://rs.tdwg.org/dwc/terms/scientificNameAuthorship", "http://rs.tdwg.org/dwc/terms/taxonRank", "http://rs.tdwg.org/dwc/terms/taxonomicStatus", "http://rs.tdwg.org/dwc/terms/parentNameUsageID", "http://rs.tdwg.org/dwc/terms/acceptedNameUsageID", "http://rs.tdwg.org/dwc/terms/genus", "http://rs.tdwg.org/dwc/terms/subgenus", "http://rs.tdwg.org/dwc/terms/specificEpithet", "http://rs.tdwg.org/dwc/terms/infraspecificEpithet", "http://purl.org/dc/elements/1.1/identifier", "http://purl.org/dc/elements/1.1/modified", "http://purl.org/dc/elements/1.1/source" };
    DelimitedLineTokenizer tokenizer = new DelimitedLineTokenizer();
    tokenizer.setDelimiter(DelimitedLineTokenizer.DELIMITER_TAB);
    tokenizer.setNames(names);
    taxonService = EasyMock.createMock(TaxonService.class);
    @SuppressWarnings("rawtypes") Set<Converter> converters = new HashSet<>();
    converters.add(new StringToIsoDateTimeConverter());
    converters.add(new TaxonomicStatusConverter());
    converters.add(new RankConverter());
    converters.add(new NomenclaturalStatusConverter());
    ConversionServiceFactoryBean factoryBean = new ConversionServiceFactoryBean();
    factoryBean.setConverters(converters);
    factoryBean.afterPropertiesSet();
    ConversionService conversionService = factoryBean.getObject();
    FieldSetMapper fieldSetMapper = new FieldSetMapper();
    fieldSetMapper.setFieldNames(names);
    fieldSetMapper.setDefaultValues(new HashMap<String, String>());
    fieldSetMapper.setConversionService(conversionService);
    DefaultLineMapper<Taxon> lineMapper = new DefaultLineMapper<Taxon>();
    lineMapper.setFieldSetMapper(fieldSetMapper);
    lineMapper.setLineTokenizer(tokenizer);
    flatFileItemReader.setEncoding("UTF-8");
    flatFileItemReader.setLinesToSkip(0);
    flatFileItemReader.setResource(content);
    flatFileItemReader.setLineMapper(lineMapper);
    flatFileItemReader.afterPropertiesSet();
}