Examples with ConcurrentModificationException org.sagebionetworks.bridge.exceptions.ConcurrentModificationException used on opensource projects

Example 1 with ConcurrentModificationException

use of org.sagebionetworks.bridge.exceptions.ConcurrentModificationException in project BridgeServer2 by Sage-Bionetworks.

the class DynamoCompoundActivityDefinitionDao method updateCompoundActivityDefinition.

/**
 * {@inheritDoc}
 */
@Override
public CompoundActivityDefinition updateCompoundActivityDefinition(CompoundActivityDefinition compoundActivityDefinition) {
    // Currently, both a save expression and a mismatched version number will throw a
    // ConditionalCheckFailedException, so it's not possible to distinguish between an EntityNotFound and a
    // ConcurrentModificationException using a single atomic DDB request. Since ConcurrentModification is more
    // nefarious, we'll use the atomic operation for that and use a load-before-update to check that the def
    // already exists.
    // Call get() to verify the def exists. This will throw an EntityNotFoundException if it doesn't exist.
    String taskId = compoundActivityDefinition.getTaskId();
    getCompoundActivityDefinition(compoundActivityDefinition.getAppId(), taskId);
    // Call DDB mapper to save.
    try {
        mapper.save(compoundActivityDefinition);
    } catch (ConditionalCheckFailedException ex) {
        throw new ConcurrentModificationException(compoundActivityDefinition);
    }
    return compoundActivityDefinition;
}

Example 2 with ConcurrentModificationException

use of org.sagebionetworks.bridge.exceptions.ConcurrentModificationException in project BridgeServer2 by Sage-Bionetworks.

the class DynamoCompoundActivityDefinitionDao method createCompoundActivityDefinition.

/**
 * {@inheritDoc}
 */
@Override
public CompoundActivityDefinition createCompoundActivityDefinition(CompoundActivityDefinition compoundActivityDefinition) {
    // Currently, all CompoundActivityDefinitions are DynamoCompoundActivityDefinitions.
    DynamoCompoundActivityDefinition ddbDef = (DynamoCompoundActivityDefinition) compoundActivityDefinition;
    // Clear the version. This allows people to copy-paste defs.
    ddbDef.setVersion(null);
    // Call DDB to create.
    try {
        mapper.save(ddbDef);
    } catch (ConditionalCheckFailedException ex) {
        throw new ConcurrentModificationException(ddbDef);
    }
    return ddbDef;
}

Example 3 with ConcurrentModificationException

use of org.sagebionetworks.bridge.exceptions.ConcurrentModificationException in project BridgeServer2 by Sage-Bionetworks.

the class UploadService method uploadComplete.

public void uploadComplete(String appId, UploadCompletionClient completedBy, Upload upload, boolean redrive) {
    String uploadId = upload.getUploadId();
    // We don't want to kick off upload validation on an upload that already has upload validation.
    if (!upload.canBeValidated() && !redrive) {
        logger.info(String.format("uploadComplete called for upload %s, which is already complete", uploadId));
        return;
    }
    final String objectId = upload.getObjectId();
    ObjectMetadata obj;
    try {
        Stopwatch stopwatch = Stopwatch.createStarted();
        obj = s3Client.getObjectMetadata(uploadBucket, objectId);
        logger.info("Finished getting S3 metadata for bucket " + uploadBucket + " key " + objectId + " in " + stopwatch.elapsed(TimeUnit.MILLISECONDS) + " ms");
    } catch (AmazonS3Exception ex) {
        if (ex.getStatusCode() == 404) {
            throw new NotFoundException(ex);
        } else {
            // Only S3 404s are mapped to 404s. Everything else is an internal server error.
            throw new BridgeServiceException(ex);
        }
    }
    String sse = obj.getSSEAlgorithm();
    if (!AES_256_SERVER_SIDE_ENCRYPTION.equals(sse)) {
        logger.error("Missing S3 server-side encryption (SSE) for presigned upload " + uploadId + ".");
    }
    try {
        uploadDao.uploadComplete(completedBy, upload);
    } catch (ConcurrentModificationException ex) {
        // The old workflow is the app calls uploadComplete. The new workflow has an S3 trigger to call
        // uploadComplete. During the transition, it's very likely that this will be called twice, sometimes
        // concurrently. As such, we should log and squelch the ConcurrentModificationException.
        logger.info("Concurrent modification of upload " + uploadId + " while marking upload complete");
        // and duplicate records.
        return;
    }
    // kick off upload validation
    App app = appService.getApp(appId);
    if (BridgeUtils.isExporter3Configured(app)) {
        exporter3Service.completeUpload(app, upload);
    }
    // For backwards compatibility, always call Legacy Exporter 2.0. In the future, we may introduce a setting to
    // disable this for new apps.
    uploadValidationService.validateUpload(appId, upload);
}

Example 4 with ConcurrentModificationException

use of org.sagebionetworks.bridge.exceptions.ConcurrentModificationException in project BridgeServer2 by Sage-Bionetworks.

the class DynamoUploadDao method uploadComplete.

/**
 * {@inheritDoc}
 */
@Override
public void uploadComplete(@Nonnull UploadCompletionClient completedBy, @Nonnull Upload upload) {
    DynamoUpload2 upload2 = (DynamoUpload2) upload;
    upload2.setStatus(UploadStatus.VALIDATION_IN_PROGRESS);
    // TODO: If we globalize Bridge, we'll need to make this timezone configurable.
    upload2.setUploadDate(LocalDate.now(BridgeConstants.LOCAL_TIME_ZONE));
    upload2.setCompletedOn(DateUtils.getCurrentMillisFromEpoch());
    upload2.setCompletedBy(completedBy);
    try {
        mapper.save(upload2);
    } catch (ConditionalCheckFailedException ex) {
        throw new ConcurrentModificationException("Upload " + upload.getUploadId() + " is already complete");
    }
}

Example 5 with ConcurrentModificationException

use of org.sagebionetworks.bridge.exceptions.ConcurrentModificationException in project BridgeServer2 by Sage-Bionetworks.

the class DynamoSurveyDaoTest method createSurveyConditionalCheckFailedException.

@SuppressWarnings("unchecked")
@Test
public void createSurveyConditionalCheckFailedException() {
    DynamoSurvey survey = new DynamoSurvey();
    survey.setAppId(TEST_APP_ID);
    mockSurveyMapper(survey);
    mockSurveyElementMapper();
    when(mockSurveyElementMapper.query(eq(DynamoSurveyElement.class), any())).thenReturn(mockElementQueryList);
    doThrow(new ConditionalCheckFailedException("")).when(mockSurveyMapper).save(any());
    try {
        dao.createSurvey(survey);
        fail("Should have thrown exceptions");
    } catch (ConcurrentModificationException e) {
        verify(mockSurveyElementMapper, times(2)).batchDelete(any(List.class));
    }
}