Examples with ResourceList org.sagebionetworks.bridge.models.ResourceList used on opensource projects

Example 1 with ResourceList

use of org.sagebionetworks.bridge.models.ResourceList in project BridgeServer2 by Sage-Bionetworks.

the class AppController method getAppMemberships.

@GetMapping(path = { "/v1/apps/memberships", "/v3/studies/memberships" }, produces = { APPLICATION_JSON_UTF8_VALUE })
public String getAppMemberships() throws Exception {
    UserSession session = getAuthenticatedSession();
    if (session.getParticipant().getRoles().isEmpty()) {
        throw new UnauthorizedException(APP_ACCESS_EXCEPTION_MSG);
    }
    Stream<App> stream = null;
    if (!session.isSynapseAuthenticated()) {
        // If they have not signed in via Synapse, they cannot switch apps, so don't return any
        stream = ImmutableList.<App>of().stream();
    } else if (session.isInRole(SUPERADMIN)) {
        // Superadmins can see all apps and can switch between all apps.
        stream = appService.getApps().stream().filter(s -> s.isActive());
    } else {
        // Otherwise, apps are linked by Synapse user ID.
        List<String> appIds = accountService.getAppIdsForUser(session.getParticipant().getSynapseUserId());
        stream = appIds.stream().map(id -> appService.getApp(id)).filter(s -> s.isActive() && appIds.contains(s.getIdentifier()));
    }
    List<App> apps = stream.sorted(APP_COMPARATOR).collect(toList());
    return APP_LIST_WRITER.writeValueAsString(new ResourceList<App>(apps, true));
}

Example 2 with ResourceList

use of org.sagebionetworks.bridge.models.ResourceList in project BridgeServer2 by Sage-Bionetworks.

the class StudyActivityEventService method getRecentStudyActivityEvents.

/**
 * Get a complete set of all events for this user, where the timestamp of each entry is the most recent timestamp
 * as determined by the <code>createdOn</code> value of the record (in other words, the time of creation as measured
 * by the server, and not the client or the time of the event).
 *
 * @param appId
 *      the appId of the study
 * @param studyId
 *      the study in which these events have occurred
 * @param userId
 *      the ID of the participant account
 * @return
 *      a complete set of event records for this user, including the most recent record for each event
 */
public ResourceList<StudyActivityEvent> getRecentStudyActivityEvents(String appId, String studyId, String userId) {
    checkNotNull(userId);
    checkNotNull(studyId);
    Account account = accountService.getAccount(AccountId.forId(appId, userId)).orElseThrow(() -> new EntityNotFoundException(Account.class));
    List<StudyActivityEvent> events = dao.getRecentStudyActivityEvents(userId, studyId);
    addEnrollmentIfMissing(account, events, studyId);
    // There are some global events related to authentication and account creation that
    // are useful when working with study-specific events, so add these from the global
    // system.
    Map<String, DateTime> map = activityEventService.getActivityEventMap(appId, account.getHealthCode());
    for (String fieldName : GLOBAL_EVENTS_OF_INTEREST) {
        addIfPresent(events, map, fieldName, true);
    }
    events.sort(Comparator.comparing(StudyActivityEvent::getEventId));
    return new ResourceList<>(events, true);
}

Example 3 with ResourceList

use of org.sagebionetworks.bridge.models.ResourceList in project BridgeServer2 by Sage-Bionetworks.

the class AdherenceServiceTest method getEventStreamAdherenceReport.

@Test
public void getEventStreamAdherenceReport() {
    RequestContext.set(new RequestContext.Builder().withCallerUserId(TEST_USER_ID).withCallerEnrolledStudies(ImmutableSet.of(TEST_STUDY_ID)).build());
    Study study = Study.create();
    study.setScheduleGuid(SCHEDULE_GUID);
    when(mockStudyService.getStudy(TEST_APP_ID, TEST_STUDY_ID, true)).thenReturn(study);
    List<TimelineMetadata> metadata = ImmutableList.of();
    when(mockScheduleService.getScheduleMetadata(SCHEDULE_GUID)).thenReturn(metadata);
    ResourceList<StudyActivityEvent> events = new ResourceList<>(ImmutableList.of(), true);
    when(mockStudyActivityEventService.getRecentStudyActivityEvents(TEST_APP_ID, TEST_STUDY_ID, TEST_USER_ID)).thenReturn(events);
    PagedResourceList<AdherenceRecord> adherencePage = new PagedResourceList<>(ImmutableList.of(), 0);
    when(mockRecordDao.getAdherenceRecords(any())).thenReturn(adherencePage);
    EventStreamAdherenceReport report = service.getEventStreamAdherenceReport(TEST_APP_ID, TEST_STUDY_ID, TEST_USER_ID, EVENT_TS, TEST_CLIENT_TIME_ZONE, true);
    assertTrue(report.getStreams().isEmpty());
    assertEquals(report.getTimestamp(), EVENT_TS.withZone(DateTimeZone.forID(TEST_CLIENT_TIME_ZONE)));
    assertEquals(report.getAdherencePercent(), 100);
    verify(mockRecordDao).getAdherenceRecords(searchCaptor.capture());
    AdherenceRecordsSearch search = searchCaptor.getValue();
    assertTrue(search.getCurrentTimestampsOnly());
    assertTrue(search.getIncludeRepeats());
    assertEquals(search.getAdherenceRecordType(), AdherenceRecordType.SESSION);
    assertEquals(search.getStudyId(), TEST_STUDY_ID);
    assertEquals(search.getUserId(), TEST_USER_ID);
}

Example 4 with ResourceList

use of org.sagebionetworks.bridge.models.ResourceList in project BridgeServer2 by Sage-Bionetworks.

the class AdherenceServiceTest method getWeeklyAdherenceReport_studyHasNoSchedule.

@Test
public void getWeeklyAdherenceReport_studyHasNoSchedule() {
    RequestContext.set(new RequestContext.Builder().withCallerRoles(ImmutableSet.of(ADMIN)).build());
    Account account = Account.create();
    account.setAppId(TEST_APP_ID);
    account.setId(TEST_USER_ID);
    account.setFirstName("firstName");
    account.setLastName("lastName");
    account.setEmail(TestConstants.EMAIL);
    account.setPhone(TestConstants.PHONE);
    account.setClientTimeZone(TEST_CLIENT_TIME_ZONE);
    account.getEnrollments().add(Enrollment.create(TEST_APP_ID, TEST_STUDY_ID, TEST_USER_ID, TEST_EXTERNAL_ID));
    Study study = Study.create();
    when(mockStudyService.getStudy(TEST_APP_ID, TEST_STUDY_ID, true)).thenReturn(study);
    List<StudyActivityEvent> events = ImmutableList.of();
    ResourceList<StudyActivityEvent> page = new ResourceList<>(events, true);
    when(mockStudyActivityEventService.getRecentStudyActivityEvents(TEST_APP_ID, TEST_STUDY_ID, TEST_USER_ID)).thenReturn(page);
    PagedResourceList<AdherenceRecord> page2 = new PagedResourceList<>(ImmutableList.of(), 0);
    when(mockRecordDao.getAdherenceRecords(any())).thenReturn(page2);
    WeeklyAdherenceReport retValue = service.getWeeklyAdherenceReport(TEST_APP_ID, TEST_STUDY_ID, account);
    assertEquals(retValue.getAppId(), TEST_APP_ID);
    assertEquals(retValue.getStudyId(), TEST_STUDY_ID);
    assertEquals(retValue.getUserId(), TEST_USER_ID);
    assertEquals(retValue.getClientTimeZone(), TEST_CLIENT_TIME_ZONE);
    assertEquals(retValue.getCreatedOn(), MODIFIED_ON.withZone(DateTimeZone.forID(TEST_CLIENT_TIME_ZONE)));
    assertNull(retValue.getWeeklyAdherencePercent());
    assertEquals(retValue.getParticipant().getIdentifier(), TEST_USER_ID);
    verify(mockReportDao).saveWeeklyAdherenceReport(retValue);
// The contents of the weekly report are tested separately by testing the generator
}

Example 5 with ResourceList

use of org.sagebionetworks.bridge.models.ResourceList in project BridgeServer2 by Sage-Bionetworks.

the class AdherenceServiceTest method getStudyAdherenceReport.

@Test
public void getStudyAdherenceReport() throws Exception {
    RequestContext.set(new RequestContext.Builder().withCallerUserId("id").withOrgSponsoredStudies(ImmutableSet.of(TEST_STUDY_ID)).withCallerRoles(ImmutableSet.of(STUDY_COORDINATOR)).build());
    Account account = Account.create();
    account.setAppId(TEST_APP_ID);
    account.setDataGroups(ImmutableSet.of(BridgeConstants.TEST_USER_GROUP));
    account.setId(TEST_USER_ID);
    account.setClientTimeZone("America/Chicago");
    Study study = Study.create();
    study.setScheduleGuid(SCHEDULE_GUID);
    when(mockStudyService.getStudy(TEST_APP_ID, TEST_STUDY_ID, true)).thenReturn(study);
    when(mockScheduleService.getScheduleMetadata(SCHEDULE_GUID)).thenReturn(StudyAdherenceReportGeneratorTest.createTimelineMetadata());
    ResourceList<StudyActivityEvent> events = new ResourceList<>(StudyAdherenceReportGeneratorTest.createEvents());
    when(mockStudyActivityEventService.getRecentStudyActivityEvents(TEST_APP_ID, TEST_STUDY_ID, TEST_USER_ID)).thenReturn(events);
    StudyBurst burst = new StudyBurst();
    burst.setIdentifier("Study Burst");
    burst.setOriginEventId("timeline_retrieved");
    burst.setUpdateType(IMMUTABLE);
    burst.setDelay(Period.parse("P1W"));
    burst.setOccurrences(3);
    burst.setInterval(Period.parse("P1W"));
    StudyActivityEventIdsMap map = new StudyActivityEventIdsMap();
    map.addStudyBursts(ImmutableList.of(burst));
    when(mockStudyService.getStudyActivityEventIdsMap(TEST_APP_ID, TEST_STUDY_ID)).thenReturn(map);
    PagedResourceList<AdherenceRecord> records = new PagedResourceList<>(StudyAdherenceReportGeneratorTest.createAdherenceRecords(), 10);
    when(mockRecordDao.getAdherenceRecords(any())).thenReturn(records);
    StudyAdherenceReport report = service.getStudyAdherenceReport(TEST_APP_ID, TEST_STUDY_ID, account);
    assertEquals(report.getParticipant().getIdentifier(), TEST_USER_ID);
    assertTrue(report.isTestAccount());
    assertEquals(report.getCreatedOn(), MODIFIED_ON.withZone(DateTimeZone.forID("America/Chicago")));
    assertEquals(report.getClientTimeZone(), "America/Chicago");
    verify(mockReportDao).saveWeeklyAdherenceReport(weeklyReportCaptor.capture());
    WeeklyAdherenceReport weeklyReport = weeklyReportCaptor.getValue();
    assertEquals(weeklyReport.getAppId(), TEST_APP_ID);
    assertEquals(weeklyReport.getStudyId(), TEST_STUDY_ID);
    assertEquals(weeklyReport.getUserId(), TEST_USER_ID);
    assertEquals(weeklyReport.getParticipant(), report.getParticipant());
    assertEquals(weeklyReport.getProgression(), ParticipantStudyProgress.IN_PROGRESS);
    assertTrue(weeklyReport.isTestAccount());
    assertEquals(weeklyReport.getClientTimeZone(), "America/Chicago");
    assertEquals(weeklyReport.getCreatedOn(), MODIFIED_ON.withZone(DateTimeZone.forID("America/Chicago")));
    assertEquals(weeklyReport.getNextActivity().getSessionGuid(), "initialSurveyGuid");
}