Examples with AccountRef org.sagebionetworks.bridge.models.accounts.AccountRef used on opensource projects

Example 1 with AccountRef

use of org.sagebionetworks.bridge.models.accounts.AccountRef in project BridgeServer2 by Sage-Bionetworks.

the class AdherenceService method getWeeklyAdherenceReport.

public WeeklyAdherenceReport getWeeklyAdherenceReport(String appId, String studyId, Account account) {
    Stopwatch watch = Stopwatch.createStarted();
    DateTime createdOn = getDateTime();
    String timeZone = null;
    if (account.getClientTimeZone() != null) {
        timeZone = account.getClientTimeZone();
    } else {
        timeZone = getDefaultTimeZoneId();
    }
    StudyAdherenceReport report = generateReport(appId, studyId, account.getId(), createdOn, timeZone, (state) -> StudyAdherenceReportGenerator.INSTANCE.generate(state));
    report.setParticipant(new AccountRef(account, studyId));
    report.setTestAccount(account.getDataGroups().contains(TEST_USER_GROUP));
    report.setCreatedOn(createdOn);
    report.setClientTimeZone(timeZone);
    WeeklyAdherenceReport weeklyReport = deriveWeeklyAdherenceFromStudyAdherenceReport(studyId, account, report);
    watch.stop();
    LOG.info("Weekly adherence report took " + watch.elapsed(TimeUnit.MILLISECONDS) + "ms");
    return weeklyReport;
}

Example 2 with AccountRef

use of org.sagebionetworks.bridge.models.accounts.AccountRef in project BridgeServer2 by Sage-Bionetworks.

the class WeeklyAdherenceReportTest method canSerialize.

@Test
public void canSerialize() {
    Account account = Account.create();
    account.setId(TEST_USER_ID);
    NextActivity nextActivity = NextActivity.create(new EventStreamDay());
    WeeklyAdherenceReportRow row = new WeeklyAdherenceReportRow();
    row.setLabel("rowLabel");
    row.setSearchableLabel(":rowLabel:");
    row.setSessionGuid("sessionGuid");
    row.setSessionSymbol("sessionSymbol");
    row.setSessionName("sessionName");
    row.setStudyBurstId("studyBurstId");
    row.setStudyBurstNum(2);
    row.setWeekInStudy(4);
    row.setStartEventId("event1");
    WeeklyAdherenceReport report = new WeeklyAdherenceReport();
    report.setAppId(TEST_APP_ID);
    report.setStudyId(TEST_STUDY_ID);
    report.setUserId(TEST_USER_ID);
    report.setClientTimeZone(TEST_CLIENT_TIME_ZONE);
    report.setCreatedOn(MODIFIED_ON);
    report.setSearchableLabels(ImmutableSet.of("label1", "label2"));
    report.setParticipant(new AccountRef(account, "study1"));
    report.setTestAccount(true);
    report.setProgression(IN_PROGRESS);
    report.setWeeklyAdherencePercent(79);
    report.setRows(ImmutableList.of(row));
    report.setWeekInStudy(2);
    report.setStartDate(LocalDate.parse("2022-02-02"));
    report.setByDayEntries(ImmutableMap.of(new Integer(6), ImmutableList.of(new EventStreamDay())));
    report.setNextActivity(nextActivity);
    // It's there, it works, it's persisted, but it's not part of JSON output
    assertTrue(report.isTestAccount());
    // These are not in the JSON
    assertEquals(report.getAppId(), TEST_APP_ID);
    assertEquals(report.getStudyId(), TEST_STUDY_ID);
    assertEquals(report.getUserId(), TEST_USER_ID);
    assertEquals(report.getSearchableLabels(), ImmutableSet.of("label1", "label2"));
    JsonNode node = BridgeObjectMapper.get().valueToTree(report);
    assertEquals(node.size(), 12);
    assertNull(node.get("appId"));
    assertNull(node.get("studyId"));
    assertNull(node.get("userId"));
    assertEquals(node.get("participant").get("identifier").textValue(), "userId");
    assertEquals(node.get("clientTimeZone").textValue(), TEST_CLIENT_TIME_ZONE);
    assertEquals(node.get("createdOn").textValue(), MODIFIED_ON.withZone(DateTimeZone.forID(TEST_CLIENT_TIME_ZONE)).toString());
    assertEquals(node.get("weeklyAdherencePercent").intValue(), 79);
    assertEquals(node.get("participant").get("identifier").textValue(), TEST_USER_ID);
    assertTrue(node.get("testAccount").booleanValue());
    assertEquals(node.get("progression").textValue(), "in_progress");
    assertEquals(node.get("nextActivity").get("type").textValue(), "NextActivity");
    assertEquals(node.get("byDayEntries").get("6").get(0).get("type").textValue(), "EventStreamDay");
    assertEquals(node.get("weekInStudy").intValue(), 2);
    assertEquals(node.get("startDate").textValue(), "2022-02-02");
    assertEquals(node.get("type").textValue(), "WeeklyAdherenceReport");
    assertEquals(node.get("rows").size(), 1);
    JsonNode rowNode = node.get("rows").get(0);
    assertEquals(rowNode.get("label").textValue(), "rowLabel");
    assertEquals(rowNode.get("searchableLabel").textValue(), ":rowLabel:");
    assertEquals(rowNode.get("sessionGuid").textValue(), "sessionGuid");
    assertEquals(rowNode.get("sessionSymbol").textValue(), "sessionSymbol");
    assertEquals(rowNode.get("sessionName").textValue(), "sessionName");
    assertEquals(rowNode.get("studyBurstId").textValue(), "studyBurstId");
    assertEquals(rowNode.get("studyBurstNum").intValue(), 2);
    assertEquals(rowNode.get("weekInStudy").intValue(), 4);
    assertEquals(rowNode.get("startEventId").textValue(), "event1");
}

Example 3 with AccountRef

use of org.sagebionetworks.bridge.models.accounts.AccountRef in project BridgeServer2 by Sage-Bionetworks.

the class EnrollmentDetailTest method test.

@Test
public void test() throws Exception {
    Account account1 = Account.create();
    account1.setEmail("email1@email.com");
    AccountRef ref1 = new AccountRef(account1);
    Account account2 = Account.create();
    account2.setEmail("email2@email.com");
    AccountRef ref2 = new AccountRef(account2);
    Account account3 = Account.create();
    account3.setEmail("email3@email.com");
    AccountRef ref3 = new AccountRef(account3);
    Enrollment enrollment = Enrollment.create(TEST_APP_ID, TEST_STUDY_ID, TEST_USER_ID);
    enrollment.setExternalId("anExternalId");
    enrollment.setConsentRequired(true);
    enrollment.setNote(TEST_NOTE);
    EnrollmentDetail detail = new EnrollmentDetail(enrollment, ref1, ref2, ref3);
    assertEquals(detail.getExternalId(), "anExternalId");
    assertEquals(detail.getParticipant().getEmail(), "email1@email.com");
    assertEquals(detail.getEnrolledBy().getEmail(), "email2@email.com");
    assertEquals(detail.getWithdrawnBy().getEmail(), "email3@email.com");
    assertEquals(detail.getNote(), TEST_NOTE);
    JsonNode node = BridgeObjectMapper.get().valueToTree(detail);
    assertEquals(node.size(), 8);
    // Note that other than email and type properties, there's nothing else exposed about account
    assertEquals(node.get("studyId").textValue(), TEST_STUDY_ID);
    assertEquals(node.get("participant").size(), 2);
    assertEquals(node.get("enrolledBy").size(), 2);
    assertEquals(node.get("withdrawnBy").size(), 2);
    assertEquals(node.get("participant").get("email").textValue(), "email1@email.com");
    assertEquals(node.get("enrolledBy").get("email").textValue(), "email2@email.com");
    assertEquals(node.get("withdrawnBy").get("email").textValue(), "email3@email.com");
    assertEquals(node.get("externalId").textValue(), "anExternalId");
    assertTrue(node.get("consentRequired").booleanValue());
    assertEquals(node.get("note").textValue(), TEST_NOTE);
    assertEquals(node.get("type").textValue(), "EnrollmentDetail");
// This object is not deserialized on the server.
}

Example 4 with AccountRef

use of org.sagebionetworks.bridge.models.accounts.AccountRef in project BridgeServer2 by Sage-Bionetworks.

the class StudyAdherenceReportTest method canSerialize.

@Test
public void canSerialize() throws Exception {
    Account account = Account.create();
    account.setFirstName("firstName");
    account.setEmail(EMAIL);
    account.setId(TEST_USER_ID);
    StudyReportWeek week = new StudyReportWeek();
    EventStreamDay day = new EventStreamDay();
    day.setLabel("label");
    NextActivity nextActivity = NextActivity.create(day);
    StudyAdherenceReport report = new StudyAdherenceReport();
    report.setParticipant(new AccountRef(account, TEST_STUDY_ID));
    report.setTestAccount(true);
    report.setClientTimeZone("America/Chicago");
    report.setCreatedOn(CREATED_ON);
    report.setAdherencePercent(56);
    report.setProgression(ParticipantStudyProgress.IN_PROGRESS);
    report.setUnsetEventIds(ImmutableSet.of("event1", "event2"));
    report.setDateRange(new DateRange(LocalDate.parse("2022-02-02"), LocalDate.parse("2022-02-04")));
    report.setWeeks(ImmutableList.of(week));
    report.setEventTimestamps(ImmutableMap.of("event3", MODIFIED_ON));
    report.setUnscheduledSessions(ImmutableSet.of("session1", "session2"));
    report.setCurrentWeek(week);
    report.setNextActivity(nextActivity);
    JsonNode node = BridgeObjectMapper.get().valueToTree(report);
    assertEquals(node.get("participant").get("identifier").textValue(), "userId");
    assertEquals(node.get("participant").get("firstName").textValue(), "firstName");
    assertEquals(node.get("participant").get("email").textValue(), "email@email.com");
    assertTrue(node.get("testAccount").booleanValue());
    assertEquals(node.get("clientTimeZone").textValue(), "America/Chicago");
    assertEquals(node.get("createdOn").textValue(), CREATED_ON.withZone(DateTimeZone.forID("America/Chicago")).toString());
    assertEquals(node.get("adherencePercent").intValue(), 56);
    assertEquals(node.get("progression").textValue(), "in_progress");
    assertEquals(node.get("dateRange").get("startDate").textValue(), "2022-02-02");
    assertEquals(node.get("dateRange").get("endDate").textValue(), "2022-02-04");
    assertNull(node.get("currentWeek"));
    assertEquals(node.get("type").textValue(), "StudyAdherenceReport");
    ArrayNode weeksArray = (ArrayNode) node.get("weeks");
    assertEquals(weeksArray.get(0).get("weekInStudy").intValue(), 0);
    assertEquals(weeksArray.get(0).get("byDayEntries").size(), 7);
    assertEquals(weeksArray.get(0).get("type").textValue(), "StudyReportWeek");
    assertEquals(node.get("unsetEventIds").get(0).textValue(), "event1");
    assertEquals(node.get("unsetEventIds").get(1).textValue(), "event2");
    assertEquals(node.get("unscheduledSessions").get(0).textValue(), "session1");
    assertEquals(node.get("unscheduledSessions").get(1).textValue(), "session2");
    assertEquals(node.get("eventTimestamps").get("event3").textValue(), MODIFIED_ON.toString());
    assertEquals(node.get("nextActivity").get("label").textValue(), "label");
    assertEquals(node.get("nextActivity").get("type").textValue(), "NextActivity");
    assertEquals(node.get("type").textValue(), "StudyAdherenceReport");
}

Example 5 with AccountRef

use of org.sagebionetworks.bridge.models.accounts.AccountRef in project BridgeServer2 by Sage-Bionetworks.

the class AdherenceService method getStudyAdherenceReport.

public StudyAdherenceReport getStudyAdherenceReport(String appId, String studyId, Account account) {
    checkNotNull(appId);
    checkNotNull(studyId);
    checkNotNull(account);
    Stopwatch watch = Stopwatch.createStarted();
    DateTime createdOn = getDateTime();
    String timeZone = null;
    if (account.getClientTimeZone() != null) {
        timeZone = account.getClientTimeZone();
    } else {
        timeZone = getDefaultTimeZoneId();
    }
    StudyAdherenceReport report = generateReport(appId, studyId, account.getId(), createdOn, timeZone, (state) -> StudyAdherenceReportGenerator.INSTANCE.generate(state));
    report.setParticipant(new AccountRef(account, studyId));
    report.setTestAccount(account.getDataGroups().contains(TEST_USER_GROUP));
    report.setCreatedOn(createdOn);
    report.setClientTimeZone(timeZone);
    deriveWeeklyAdherenceFromStudyAdherenceReport(studyId, account, report);
    watch.stop();
    LOG.info("Study adherence report took " + watch.elapsed(TimeUnit.MILLISECONDS) + "ms");
    return report;
}