Examples with Activity org.sbolstandard.core2.Activity used on opensource projects

Example 1 with Activity

use of org.sbolstandard.core2.Activity in project ORCID-Source by ORCID.

the class Api2_0_rc2_LastModifiedDatesHelper method calculateLatest.

public static Date calculateLatest(ActivitiesContainer actContainerRc2) {
    Date latestAct = null;
    Collection<? extends Activity> activities = actContainerRc2.retrieveActivities();
    if (activities != null && !activities.isEmpty()) {
        Iterator<? extends Activity> activitiesIterator = activities.iterator();
        XMLGregorianCalendar latest = activitiesIterator.next().getLastModifiedDate().getValue();
        while (activitiesIterator.hasNext()) {
            Activity activity = activitiesIterator.next();
            if (latest.compare(activity.getLastModifiedDate().getValue()) == -1) {
                latest = activity.getLastModifiedDate().getValue();
            }
        }
        actContainerRc2.setLastModifiedDate(new LastModifiedDate(latest));
        latestAct = latest.toGregorianCalendar().getTime();
    }
    return latestAct;
}

Example 2 with Activity

use of org.sbolstandard.core2.Activity in project ORCID-Source by ORCID.

the class Api2_0_rc3_LastModifiedDatesHelper method calculateLastModified.

public static void calculateLastModified(ActivitiesContainer actContainerRc3) {
    Collection<? extends Activity> activities = actContainerRc3.retrieveActivities();
    if (activities != null && !activities.isEmpty()) {
        Iterator<? extends Activity> activitiesIterator = activities.iterator();
        XMLGregorianCalendar latest = activitiesIterator.next().getLastModifiedDate().getValue();
        while (activitiesIterator.hasNext()) {
            Activity activity = activitiesIterator.next();
            if (latest.compare(activity.getLastModifiedDate().getValue()) == -1) {
                latest = activity.getLastModifiedDate().getValue();
            }
        }
        actContainerRc3.setLastModifiedDate(new LastModifiedDate(latest));
    }
}

Example 3 with Activity

use of org.sbolstandard.core2.Activity in project kie-wb-common by kiegroup.

the class Bpmn2JsonMarshaller method setCatchEventProperties.

private void setCatchEventProperties(CatchEvent event, Map<String, Object> properties, Definitions def) {
    if (event.getOutputSet() != null) {
        List<DataOutput> dataOutputs = event.getOutputSet().getDataOutputRefs();
        StringBuffer doutbuff = new StringBuffer();
        for (DataOutput dout : dataOutputs) {
            doutbuff.append(dout.getName());
            String dtype = getAnyAttributeValue(dout, "dtype");
            if (dtype != null && !dtype.isEmpty()) {
                doutbuff.append(":").append(dtype);
            }
            doutbuff.append(",");
        }
        if (doutbuff.length() > 0) {
            doutbuff.setLength(doutbuff.length() - 1);
        }
        String dataoutput = doutbuff.toString();
        properties.put(DATAOUTPUT, dataoutput);
        List<DataOutputAssociation> outputAssociations = event.getDataOutputAssociation();
        StringBuffer doutassociationbuff = new StringBuffer();
        for (DataOutputAssociation doa : outputAssociations) {
            String doaName = ((DataOutput) doa.getSourceRef().get(0)).getName();
            if (doaName != null && doaName.length() > 0) {
                doutassociationbuff.append("[dout]" + ((DataOutput) doa.getSourceRef().get(0)).getName());
                doutassociationbuff.append("->");
                doutassociationbuff.append(doa.getTargetRef().getId());
                doutassociationbuff.append(",");
            }
        }
        if (doutassociationbuff.length() > 0) {
            doutassociationbuff.setLength(doutassociationbuff.length() - 1);
        }
        String assignments = doutassociationbuff.toString();
        properties.put(DATAOUTPUTASSOCIATIONS, assignments);
        setAssignmentsInfoProperty(null, null, dataoutput, null, assignments, properties);
    }
    // event definitions
    List<EventDefinition> eventdefs = event.getEventDefinitions();
    for (EventDefinition ed : eventdefs) {
        if (ed instanceof TimerEventDefinition) {
            setTimerEventProperties((TimerEventDefinition) ed, properties);
        } else if (ed instanceof SignalEventDefinition) {
            if (((SignalEventDefinition) ed).getSignalRef() != null) {
                // find signal with the corresponding id
                boolean foundSignalRef = false;
                List<RootElement> rootElements = def.getRootElements();
                for (RootElement re : rootElements) {
                    if (re instanceof Signal) {
                        if (re.getId().equals(((SignalEventDefinition) ed).getSignalRef())) {
                            properties.put("signalref", ((Signal) re).getName());
                            foundSignalRef = true;
                        }
                    }
                }
                if (!foundSignalRef) {
                    properties.put(SIGNALREF, "");
                }
            } else {
                properties.put(SIGNALREF, "");
            }
        } else if (ed instanceof ErrorEventDefinition) {
            if (((ErrorEventDefinition) ed).getErrorRef() != null && ((ErrorEventDefinition) ed).getErrorRef().getErrorCode() != null) {
                properties.put(ERRORREF, ((ErrorEventDefinition) ed).getErrorRef().getErrorCode());
            } else {
                properties.put(ERRORREF, "");
            }
        } else if (ed instanceof ConditionalEventDefinition) {
            FormalExpression conditionalExp = (FormalExpression) ((ConditionalEventDefinition) ed).getCondition();
            if (conditionalExp != null) {
                setConditionExpressionProperties(conditionalExp, properties, "drools");
            }
        } else if (ed instanceof EscalationEventDefinition) {
            if (((EscalationEventDefinition) ed).getEscalationRef() != null) {
                Escalation esc = ((EscalationEventDefinition) ed).getEscalationRef();
                if (esc.getEscalationCode() != null && esc.getEscalationCode().length() > 0) {
                    properties.put(ESCALATIONCODE, esc.getEscalationCode());
                } else {
                    properties.put(ESCALATIONCODE, "");
                }
            }
        } else if (ed instanceof MessageEventDefinition) {
            if (((MessageEventDefinition) ed).getMessageRef() != null) {
                Message msg = ((MessageEventDefinition) ed).getMessageRef();
                properties.put(MESSAGEREF, msg.getName());
            }
        } else if (ed instanceof CompensateEventDefinition) {
            if (((CompensateEventDefinition) ed).getActivityRef() != null) {
                Activity act = ((CompensateEventDefinition) ed).getActivityRef();
                properties.put(ACTIVITYREF, act.getName());
            }
        }
    }
}

Example 4 with Activity

use of org.sbolstandard.core2.Activity in project kie-wb-common by kiegroup.

the class Bpmn2JsonUnmarshaller method setThrowEventsInfoForLanes.

public void setThrowEventsInfoForLanes(Lane lane, Definitions def, List<RootElement> rootElements, List<Signal> toAddSignals, Set<Error> toAddErrors, Set<Escalation> toAddEscalations, Set<Message> toAddMessages, Set<ItemDefinition> toAddItemDefinitions) {
    List<FlowNode> laneFlowNodes = lane.getFlowNodeRefs();
    for (FlowNode fe : laneFlowNodes) {
        if (fe instanceof ThrowEvent) {
            if (((ThrowEvent) fe).getEventDefinitions().size() > 0) {
                EventDefinition ed = ((ThrowEvent) fe).getEventDefinitions().get(0);
                if (ed instanceof SignalEventDefinition) {
                    SignalEventDefinition sed = (SignalEventDefinition) ed;
                    if (sed.getSignalRef() != null && sed.getSignalRef().length() > 0) {
                        String signalRef = sed.getSignalRef();
                        boolean shouldAddSignal = true;
                        for (RootElement re : rootElements) {
                            if (re instanceof Signal) {
                                if (((Signal) re).getName().equals(signalRef)) {
                                    shouldAddSignal = false;
                                    break;
                                }
                            }
                        }
                        if (toAddSignals != null) {
                            for (Signal s : toAddSignals) {
                                if (s.getName().equals(signalRef)) {
                                    shouldAddSignal = false;
                                    break;
                                }
                            }
                        }
                        if (shouldAddSignal) {
                            Signal signal = Bpmn2Factory.eINSTANCE.createSignal();
                            signal.setName(signalRef);
                            toAddSignals.add(signal);
                        }
                    }
                } else if (ed instanceof ErrorEventDefinition) {
                    String errorCode = null;
                    String errorId = null;
                    Iterator<FeatureMap.Entry> iter = ed.getAnyAttribute().iterator();
                    while (iter.hasNext()) {
                        FeatureMap.Entry entry = iter.next();
                        if (entry.getEStructuralFeature().getName().equals("erefname")) {
                            errorId = (String) entry.getValue();
                            errorCode = (String) entry.getValue();
                        }
                    }
                    Error err = this._errors.get(errorCode);
                    if (err == null) {
                        err = Bpmn2Factory.eINSTANCE.createError();
                        err.setId(errorId);
                        err.setErrorCode(errorCode);
                        this._errors.put(errorCode, err);
                    }
                    toAddErrors.add(err);
                    ((ErrorEventDefinition) ed).setErrorRef(err);
                } else if (ed instanceof EscalationEventDefinition) {
                    String escalationCode = null;
                    Iterator<FeatureMap.Entry> iter = ed.getAnyAttribute().iterator();
                    while (iter.hasNext()) {
                        FeatureMap.Entry entry = iter.next();
                        if (entry.getEStructuralFeature().getName().equals("esccode")) {
                            escalationCode = (String) entry.getValue();
                            break;
                        }
                    }
                    Escalation escalation = this._escalations.get(escalationCode);
                    if (escalation == null) {
                        escalation = Bpmn2Factory.eINSTANCE.createEscalation();
                        escalation.setEscalationCode(escalationCode);
                        this._escalations.put(escalationCode, escalation);
                    }
                    toAddEscalations.add(escalation);
                    ((EscalationEventDefinition) ed).setEscalationRef(escalation);
                } else if (ed instanceof MessageEventDefinition) {
                    ((MessageEventDefinition) ed).setMessageRef(extractMessage(ed, toAddMessages, toAddItemDefinitions));
                } else if (ed instanceof CompensateEventDefinition) {
                    Iterator<FeatureMap.Entry> iter = ed.getAnyAttribute().iterator();
                    while (iter.hasNext()) {
                        FeatureMap.Entry entry = iter.next();
                        if (entry.getEStructuralFeature().getName().equals("actrefname")) {
                            String activityNameRef = (String) entry.getValue();
                            // we have to iterate again through all flow
                            // elements
                            // in order to find our activity name
                            List<RootElement> re = def.getRootElements();
                            for (RootElement r : re) {
                                if (r instanceof Process) {
                                    Process p = (Process) r;
                                    List<FlowElement> fes = p.getFlowElements();
                                    for (FlowElement f : fes) {
                                        if (f instanceof Activity && ((Activity) f).getName().equals(activityNameRef)) {
                                            ((CompensateEventDefinition) ed).setActivityRef((Activity) f);
                                            ((Activity) f).setIsForCompensation(true);
                                        }
                                    }
                                }
                            }
                        }
                    }
                }
            }
        } else if (fe instanceof FlowElementsContainer) {
            setThrowEventsInfo((FlowElementsContainer) fe, def, rootElements, toAddSignals, toAddErrors, toAddEscalations, toAddMessages, toAddItemDefinitions);
        }
    }
}

Example 5 with Activity

use of org.sbolstandard.core2.Activity in project kie-wb-common by kiegroup.

the class Bpmn2JsonUnmarshaller method revisitCatchEVentsConvertToBoundaryExecute.

private void revisitCatchEVentsConvertToBoundaryExecute(Process process, FlowElementsContainer subContainer, List<CatchEvent> catchEventsToRemove, Map<BoundaryEvent, List<String>> boundaryEventsToAdd) {
    FlowElementsContainer container = subContainer != null ? subContainer : process;
    List<FlowElement> flowElements = container.getFlowElements();
    for (FlowElement fe : flowElements) {
        if (fe instanceof CatchEvent) {
            // check if we have an outgoing connection to this catch event from an activity
            for (Entry<Object, List<String>> entry : _outgoingFlows.entrySet()) {
                for (String flowId : entry.getValue()) {
                    if (entry.getKey() instanceof Activity && flowId.equals(fe.getId())) {
                        CatchEvent ce = (CatchEvent) fe;
                        EventDefinition ed = null;
                        if (ce.getEventDefinitions() != null && ce.getEventDefinitions().size() > 0) {
                            ed = ce.getEventDefinitions().get(0);
                        }
                        BoundaryEvent be = Bpmn2Factory.eINSTANCE.createBoundaryEvent();
                        if (ed != null && ed instanceof ErrorEventDefinition) {
                            be.setCancelActivity(true);
                        } else {
                            Iterator<FeatureMap.Entry> iter = ce.getAnyAttribute().iterator();
                            while (iter.hasNext()) {
                                FeatureMap.Entry entry2 = iter.next();
                                if (entry2.getEStructuralFeature().getName().equals("boundaryca")) {
                                    String boundaryceVal = (String) entry2.getValue();
                                    be.setCancelActivity(Boolean.parseBoolean(boundaryceVal));
                                }
                            }
                        }
                        if (ce.getDataOutputs() != null) {
                            be.getDataOutputs().addAll(ce.getDataOutputs());
                        }
                        if (ce.getDataOutputAssociation() != null) {
                            be.getDataOutputAssociation().addAll(ce.getDataOutputAssociation());
                        }
                        if (ce.getOutputSet() != null) {
                            be.setOutputSet(ce.getOutputSet());
                        }
                        if (ce.getEventDefinitions() != null) {
                            be.getEventDefinitions().addAll(ce.getEventDefinitions());
                        }
                        if (ce.getEventDefinitionRefs() != null) {
                            be.getEventDefinitionRefs().addAll(ce.getEventDefinitionRefs());
                        }
                        if (ce.getProperties() != null) {
                            be.getProperties().addAll(ce.getProperties());
                        }
                        if (ce.getAnyAttribute() != null) {
                            be.getAnyAttribute().addAll(ce.getAnyAttribute());
                        }
                        if (ce.getOutgoing() != null) {
                            be.getOutgoing().addAll(ce.getOutgoing());
                        }
                        if (ce.getIncoming() != null) {
                            be.getIncoming().addAll(ce.getIncoming());
                        }
                        if (ce.getProperties() != null) {
                            be.getProperties().addAll(ce.getProperties());
                        }
                        be.getDocumentation().addAll(ce.getDocumentation());
                        be.setName(ce.getName());
                        String ceElementName = Utils.getMetaDataValue(ce.getExtensionValues(), "elementname");
                        if (ceElementName != null) {
                            Utils.setMetaDataExtensionValue(be, "elementname", ceElementName);
                        }
                        be.setId(ce.getId());
                        be.setAttachedToRef(((Activity) entry.getKey()));
                        ((Activity) entry.getKey()).getBoundaryEventRefs().add(be);
                        catchEventsToRemove.add(ce);
                        boundaryEventsToAdd.put(be, _outgoingFlows.get(ce));
                    }
                }
            }
        } else if (fe instanceof FlowElementsContainer) {
            revisitCatchEVentsConvertToBoundaryExecute(process, (FlowElementsContainer) fe, catchEventsToRemove, boundaryEventsToAdd);
        }
    }
    if (catchEventsToRemove.size() > 0) {
        for (CatchEvent ce : catchEventsToRemove) {
            boolean removed = container.getFlowElements().remove(ce);
            _outgoingFlows.remove(ce);
        }
    }
    if (boundaryEventsToAdd.size() > 0) {
        Iterator<BoundaryEvent> boundaryToAddIterator = boundaryEventsToAdd.keySet().iterator();
        while (boundaryToAddIterator.hasNext()) {
            BoundaryEvent bToAdd = boundaryToAddIterator.next();
            container.getFlowElements().add(bToAdd);
            _outgoingFlows.put(bToAdd, boundaryEventsToAdd.get(bToAdd));
        }
    }
}