Examples with Cut org.sbolstandard.core2.Cut used on opensource projects

Example 6 with Cut

use of org.sbolstandard.core2.Cut in project libSBOLj by SynBioDex.

the class SequenceAnnotationTest method test_locationMethods.

@Test
public void test_locationMethods() throws SBOLValidationException {
    Cut promoter_cut = promoter_SA.addCut("promoter_cut", 1);
    assertTrue(gRNA_b_gene.getSequenceAnnotation("promoter_SA").getLocation("promoter_cut").equals(promoter_cut));
    promoter_cut.unsetOrientation();
    assertNull(promoter_cut.getOrientation());
    Location test = promoter_cut;
    assertNotNull(test.toString());
    Cut terminator_cut = terminator_SA.addCut("terminator_cut", 100);
    assertTrue(gRNA_b_gene.getSequenceAnnotation("terminator_SA").getLocation("terminator_cut").equals(terminator_cut));
    Cut gene_cut = gene_SA.addCut("gene_cut", 50, OrientationType.INLINE);
    assertTrue(gRNA_b_gene.getSequenceAnnotation("gene_SA").getLocation("gene_cut").equals(gene_cut));
    gene_SA.removeLocation(gene_cut);
    assertNull(gene_SA.getLocation("gene_cut"));
    Range gene_range = gene_SA.addRange("gene_range", 50, 99);
    assertTrue(gRNA_b_gene.getSequenceAnnotation("gene_SA").getLocation("gene_range").equals(gene_range));
    gene_range.unsetOrientation();
    assertNull(gene_range.getOrientation());
    promoter_SA.removeLocation(promoter_cut);
    assertNull(promoter_SA.getLocation(promoter_cut.getIdentity()));
    GenericLocation promoter_glocation = promoter_SA.addGenericLocation("promoter_glocation");
    assertTrue(gRNA_b_gene.getSequenceAnnotation("promoter_SA").getLocation("promoter_glocation").equals(promoter_glocation));
    terminator_SA.removeLocation(terminator_cut);
    assertNull(terminator_SA.getLocation("terminator_cut"));
    GenericLocation terminator_glocation = terminator_SA.addGenericLocation("terminator_glocation", OrientationType.INLINE);
    assertTrue(gRNA_b_gene.getSequenceAnnotation("terminator_SA").getLocation("terminator_glocation").equals(terminator_glocation));
}