Examples with InferredSubClassAxiomGenerator org.semanticweb.owlapi.util.InferredSubClassAxiomGenerator used on opensource projects

Example 1 with InferredSubClassAxiomGenerator

use of org.semanticweb.owlapi.util.InferredSubClassAxiomGenerator in project goci by EBISPOT.

the class DefaultGWASOWLPublisher method saveGWASDataInferredView.

public void saveGWASDataInferredView(OWLReasoner reasoner, File outputFile) throws OWLConversionException {
    try {
        // create new ontology to hold inferred axioms
        OWLOntology inferredOntology = getConverter().createConversionOntology();
        getLog().info("Saving inferred view...");
        List<InferredAxiomGenerator<? extends OWLAxiom>> gens = new ArrayList<InferredAxiomGenerator<? extends OWLAxiom>>();
        // we require all inferred stuff except for disjoints...
        gens.add(new InferredClassAssertionAxiomGenerator());
        gens.add(new InferredDataPropertyCharacteristicAxiomGenerator());
        gens.add(new InferredEquivalentClassAxiomGenerator());
        gens.add(new InferredEquivalentDataPropertiesAxiomGenerator());
        gens.add(new InferredEquivalentObjectPropertyAxiomGenerator());
        gens.add(new InferredInverseObjectPropertiesAxiomGenerator());
        gens.add(new InferredObjectPropertyCharacteristicAxiomGenerator());
        gens.add(new InferredPropertyAssertionGenerator());
        gens.add(new InferredSubClassAxiomGenerator());
        gens.add(new InferredSubDataPropertyAxiomGenerator());
        gens.add(new InferredSubObjectPropertyAxiomGenerator());
        // now create the target ontology and save
        OWLOntologyManager inferredManager = inferredOntology.getOWLOntologyManager();
        InferredOntologyGenerator iog = new InferredOntologyGenerator(reasoner, gens);
        iog.fillOntology(inferredManager, inferredOntology);
        inferredManager.saveOntology(inferredOntology, IRI.create(outputFile));
        getLog().info("Inferred view saved ok");
    } catch (OWLOntologyStorageException e) {
        throw new OWLConversionException("Failed to save GWAS data (inferred view)", e);
    }
}

Example 2 with InferredSubClassAxiomGenerator

use of org.semanticweb.owlapi.util.InferredSubClassAxiomGenerator in project stanbol by apache.

the class AbstractOWLApiReasoningService method getEnrichAxiomGenerators.

/**
     * {@see InferredAxiomGenerator}s to use for the enrich() reasoning method.
     * 
     * Subclasses may want to change this.
     * 
     * @return
     */
protected List<InferredAxiomGenerator<? extends OWLAxiom>> getEnrichAxiomGenerators() {
    List<InferredAxiomGenerator<? extends OWLAxiom>> gens = new ArrayList<InferredAxiomGenerator<? extends OWLAxiom>>();
    // Classes
    gens.add(new InferredClassAssertionAxiomGenerator());
    gens.add(new InferredSubClassAxiomGenerator());
    gens.add(new InferredEquivalentClassAxiomGenerator());
    gens.add(new InferredDisjointClassesAxiomGenerator());
    // data properties
    gens.add(new InferredDataPropertyCharacteristicAxiomGenerator());
    gens.add(new InferredEquivalentDataPropertiesAxiomGenerator());
    gens.add(new InferredSubDataPropertyAxiomGenerator());
    // object properties
    gens.add(new InferredEquivalentObjectPropertyAxiomGenerator());
    gens.add(new InferredInverseObjectPropertiesAxiomGenerator());
    gens.add(new InferredObjectPropertyCharacteristicAxiomGenerator());
    gens.add(new InferredSubObjectPropertyAxiomGenerator());
    // individuals
    gens.add(new InferredClassAssertionAxiomGenerator());
    gens.add(new InferredPropertyAssertionGenerator());
    return gens;
}

Example 3 with InferredSubClassAxiomGenerator

use of org.semanticweb.owlapi.util.InferredSubClassAxiomGenerator in project stanbol by apache.

the class AbstractOWLApiReasoningService method getClassifyAxiomGenerators.

/**
     * {@see InferredAxiomGenerator}s to use for the classify() reasoning method.
     * 
     * Subclasses may want to change this.
     * 
     * @return
     */
protected List<InferredAxiomGenerator<? extends OWLAxiom>> getClassifyAxiomGenerators() {
    List<InferredAxiomGenerator<? extends OWLAxiom>> gens = new ArrayList<InferredAxiomGenerator<? extends OWLAxiom>>();
    gens.add(new InferredClassAssertionAxiomGenerator());
    gens.add(new InferredSubClassAxiomGenerator());
    gens.add(new InferredEquivalentClassAxiomGenerator());
    gens.add(new InferredDisjointClassesAxiomGenerator());
    return gens;
}