Examples with Value org.springframework.beans.factory.annotation.Value used on opensource projects

Example 1 with Value

use of org.springframework.beans.factory.annotation.Value in project goci by EBISPOT.

the class AssociationController method validateUnapproved.

/**
     -     * Run mapping pipeline on all SNPs in a study
     -     *
     -     * @param studyId            Study ID in database
     -     * @param redirectAttributes attributes for a redirect scenario
     -     */
@RequestMapping(value = "/studies/{studyId}/associations/validate_unapproved", produces = MediaType.TEXT_HTML_VALUE, method = RequestMethod.GET)
public String validateUnapproved(@PathVariable Long studyId, RedirectAttributes redirectAttributes, Model model, HttpServletRequest request) throws //                                         @RequestParam(required = false) Long associationId)
EnsemblMappingException {
    Study study = studyRepository.findOne(studyId);
    // For the study get all associations
    Collection<Association> studyAssociations = associationRepository.findByStudyId(studyId);
    for (Association associationToValidate : studyAssociations) {
        if (!associationToValidate.getSnpApproved()) {
            String measurementType = associationOperationsService.determineIfAssociationIsOrType(associationToValidate);
            List<AssociationValidationView> criticalErrors = new ArrayList<>();
            if (associationToValidate.getSnpInteraction()) {
                criticalErrors = associationOperationsService.checkSnpAssociationInteractionFormErrors((SnpAssociationInteractionForm) associationOperationsService.generateForm(associationToValidate), measurementType);
            } else {
                criticalErrors = associationOperationsService.checkSnpAssociationFormErrors((SnpAssociationStandardMultiForm) associationOperationsService.generateForm(associationToValidate), measurementType);
            }
            //if an association has critical errors, go straight to that association
            if (!criticalErrors.isEmpty()) {
                model.addAttribute("study", study);
                model.addAttribute("measurementType", measurementType);
                // Get mapping details
                model.addAttribute("mappingDetails", associationOperationsService.createMappingDetails(associationToValidate));
                // Return any association errors
                model.addAttribute("errors", criticalErrors);
                model.addAttribute("criticalErrorsFound", true);
                if (associationToValidate.getSnpInteraction()) {
                    model.addAttribute("form", associationOperationsService.generateForm(associationToValidate));
                    return "redirect:/associations/" + associationToValidate.getId();
                // return "edit_snp_interaction_association";
                } else {
                    model.addAttribute("form", associationOperationsService.generateForm(associationToValidate));
                    // Determine view
                    if (associationToValidate.getMultiSnpHaplotype()) {
                        return "redirect:/associations/" + associationToValidate.getId();
                    // return "edit_multi_snp_association";
                    } else {
                        //                             return "edit_standard_snp_association";
                        return "redirect:/associations/" + associationToValidate.getId();
                    }
                }
            } else //     if there are no criticial errors, save the validation and go to the next association
            {
                // Save and validate form
                String eRelease = ensemblRestTemplateService.getRelease();
                Collection<AssociationValidationView> errors = associationOperationsService.validateAndSaveAssociation(study, associationToValidate, currentUserDetailsService.getUserFromRequest(request), eRelease);
                // Determine if we have any errors rather than warnings
                long errorCount = errors.stream().filter(validationError -> !validationError.getWarning()).count();
                //if there are errors rather than warnings, go straight to the page to edit
                if (errorCount > 0) {
                    model.addAttribute("study", study);
                    model.addAttribute("measurementType", measurementType);
                    // Get mapping details for association we're editing
                    model.addAttribute("mappingDetails", associationOperationsService.createMappingDetails(associationToValidate));
                    model.addAttribute("errors", errors);
                    model.addAttribute("criticalErrorsFound", true);
                    if (associationToValidate.getSnpInteraction()) {
                        model.addAttribute("form", associationOperationsService.generateForm(associationToValidate));
                        //                              return "edit_snp_interaction_association";
                        return "redirect:/associations/" + associationToValidate.getId();
                    } else {
                        model.addAttribute("form", associationOperationsService.generateForm(associationToValidate));
                        // Determine view
                        if (associationToValidate.getMultiSnpHaplotype()) {
                            //                                  return "edit_multi_snp_association";
                            return "redirect:/associations/" + associationToValidate.getId();
                        } else {
                            //                                  return "edit_standard_snp_association";
                            return "redirect:/associations/" + associationToValidate.getId();
                        }
                    }
                }
            }
        }
    }
    String message = "Mapping complete, please check for any errors displayed in the 'Errors' column";
    redirectAttributes.addFlashAttribute("mappingComplete", message);
    return "redirect:/studies/" + studyId + "/associations";
}

Example 2 with Value

use of org.springframework.beans.factory.annotation.Value in project apollo by ctripcorp.

the class SpringValueProcessor method processMethod.

@Override
protected void processMethod(Object bean, String beanName, Method method) {
    // register @Value on method
    Value value = method.getAnnotation(Value.class);
    if (value == null) {
        return;
    }
    // skip Configuration bean methods
    if (method.getAnnotation(Bean.class) != null) {
        return;
    }
    if (method.getParameterTypes().length != 1) {
        logger.error("Ignore @Value setter {}.{}, expecting 1 parameter, actual {} parameters", bean.getClass().getName(), method.getName(), method.getParameterTypes().length);
        return;
    }
    Set<String> keys = placeholderHelper.extractPlaceholderKeys(value.value());
    if (keys.isEmpty()) {
        return;
    }
    for (String key : keys) {
        SpringValue springValue = new SpringValue(key, value.value(), bean, beanName, method, false);
        springValueRegistry.register(key, springValue);
        logger.debug("Monitoring {}", springValue);
    }
}

Example 3 with Value

use of org.springframework.beans.factory.annotation.Value in project apollo by ctripcorp.

the class SpringValueProcessor method processField.

@Override
protected void processField(Object bean, String beanName, Field field) {
    // register @Value on field
    Value value = field.getAnnotation(Value.class);
    if (value == null) {
        return;
    }
    Set<String> keys = placeholderHelper.extractPlaceholderKeys(value.value());
    if (keys.isEmpty()) {
        return;
    }
    for (String key : keys) {
        SpringValue springValue = new SpringValue(key, value.value(), bean, beanName, field, false);
        springValueRegistry.register(key, springValue);
        logger.debug("Monitoring {}", springValue);
    }
}

Example 4 with Value

use of org.springframework.beans.factory.annotation.Value in project vorto by eclipse.

the class ModelRepositoryController method getModelContentByModelAndMappingId.

@ApiOperation(value = "Returns the model content including target platform specific attributes for the given model- and mapping modelID")
@ApiResponses(value = { @ApiResponse(code = 400, message = "Wrong input"), @ApiResponse(code = 404, message = "Model not found") })
@RequestMapping(value = "/content/{modelId:.+}/mapping/{mappingId:.+}", method = RequestMethod.GET)
public AbstractModel getModelContentByModelAndMappingId(@ApiParam(value = "The model ID (prettyFormat)", required = true) @PathVariable final String modelId, @ApiParam(value = "The mapping Model ID (prettyFormat)", required = true) @PathVariable final String mappingId) {
    ModelInfo vortoModelInfo = modelRepository.getById(ModelId.fromPrettyFormat(modelId));
    ModelInfo mappingModelInfo = modelRepository.getById(ModelId.fromPrettyFormat(mappingId));
    if (vortoModelInfo == null) {
        throw new ModelNotFoundException("Could not find vorto model with ID: " + modelId);
    } else if (mappingModelInfo == null) {
        throw new ModelNotFoundException("Could not find mapping with ID: " + mappingId);
    }
    byte[] mappingContentZip = createZipWithAllDependencies(mappingModelInfo.getId(), ContentType.DSL);
    IModelWorkspace workspace = IModelWorkspace.newReader().addZip(new ZipInputStream(new ByteArrayInputStream(mappingContentZip))).read();
    MappingModel mappingModel = (MappingModel) workspace.get().stream().filter(p -> p instanceof MappingModel).findFirst().get();
    byte[] modelContent = createZipWithAllDependencies(vortoModelInfo.getId(), ContentType.DSL);
    workspace = IModelWorkspace.newReader().addZip(new ZipInputStream(new ByteArrayInputStream(modelContent))).read();
    return ModelDtoFactory.createResource(workspace.get().stream().filter(p -> p.getName().equals(vortoModelInfo.getId().getName())).findFirst().get(), Optional.of(mappingModel));
}

Example 5 with Value

use of org.springframework.beans.factory.annotation.Value in project microservices by pwillhan.

the class PersonPhotoRestController method setUserHome.

@Value("${user.home}")
void setUserHome(String home) {
    this.root = new File(home, "Desktop/images");
    Assert.isTrue(this.root.exists() || this.root.mkdirs(), "The path '" + this.root.getAbsolutePath() + "' must exist.");
}