Examples with Model org.springframework.ui.Model used on opensource projects

Example 6 with Model

use of org.springframework.ui.Model in project goci by EBISPOT.

the class AssociationController method addMultiSnps.

@RequestMapping(value = "/studies/{studyId}/associations/add_multi", produces = MediaType.TEXT_HTML_VALUE, method = RequestMethod.POST)
public String addMultiSnps(@ModelAttribute("form") @Valid SnpAssociationStandardMultiForm snpAssociationStandardMultiForm, BindingResult bindingResult, @PathVariable Long studyId, Model model, @RequestParam(required = true) String measurementType, HttpServletRequest request) throws EnsemblMappingException {
    Study study = studyRepository.findOne(studyId);
    model.addAttribute("study", study);
    model.addAttribute("measurementType", measurementType);
    // Binding vs Validator issue. File: messages.properties
    if (bindingResult.hasErrors()) {
        model.addAttribute("form", snpAssociationStandardMultiForm);
        return "add_multi_snp_association";
    }
    // Check for errors in form that would prevent saving an association
    List<AssociationValidationView> rowErrors = associationOperationsService.checkSnpAssociationFormErrors(snpAssociationStandardMultiForm, measurementType);
    if (!rowErrors.isEmpty()) {
        model.addAttribute("errors", rowErrors);
        model.addAttribute("form", snpAssociationStandardMultiForm);
        model.addAttribute("criticalErrorsFound", true);
        return "add_multi_snp_association";
    } else {
        // Create an association object from details in returned form
        Association newAssociation = singleSnpMultiSnpAssociationService.createAssociation(snpAssociationStandardMultiForm);
        // Save and validate form
        String eRelease = ensemblRestTemplateService.getRelease();
        Collection<AssociationValidationView> errors = null;
        try {
            errors = associationOperationsService.saveAssociationCreatedFromForm(study, newAssociation, currentUserDetailsService.getUserFromRequest(request), eRelease);
        } catch (EnsemblMappingException e) {
            return "ensembl_mapping_failure";
        }
        // Determine if we have any errors rather than warnings
        long errorCount = errors.stream().filter(validationError -> !validationError.getWarning()).count();
        if (errorCount > 0) {
            model.addAttribute("errors", errors);
            model.addAttribute("form", snpAssociationStandardMultiForm);
            model.addAttribute("criticalErrorsFound", true);
            return "add_multi_snp_association";
        } else {
            return "redirect:/associations/" + newAssociation.getId();
        }
    }
}

Example 7 with Model

use of org.springframework.ui.Model in project goci by EBISPOT.

the class AssociationController method validateUnapproved.

/**
     -     * Run mapping pipeline on all SNPs in a study
     -     *
     -     * @param studyId            Study ID in database
     -     * @param redirectAttributes attributes for a redirect scenario
     -     */
@RequestMapping(value = "/studies/{studyId}/associations/validate_unapproved", produces = MediaType.TEXT_HTML_VALUE, method = RequestMethod.GET)
public String validateUnapproved(@PathVariable Long studyId, RedirectAttributes redirectAttributes, Model model, HttpServletRequest request) throws //                                         @RequestParam(required = false) Long associationId)
EnsemblMappingException {
    Study study = studyRepository.findOne(studyId);
    // For the study get all associations
    Collection<Association> studyAssociations = associationRepository.findByStudyId(studyId);
    for (Association associationToValidate : studyAssociations) {
        if (!associationToValidate.getSnpApproved()) {
            String measurementType = associationOperationsService.determineIfAssociationIsOrType(associationToValidate);
            List<AssociationValidationView> criticalErrors = new ArrayList<>();
            if (associationToValidate.getSnpInteraction()) {
                criticalErrors = associationOperationsService.checkSnpAssociationInteractionFormErrors((SnpAssociationInteractionForm) associationOperationsService.generateForm(associationToValidate), measurementType);
            } else {
                criticalErrors = associationOperationsService.checkSnpAssociationFormErrors((SnpAssociationStandardMultiForm) associationOperationsService.generateForm(associationToValidate), measurementType);
            }
            //if an association has critical errors, go straight to that association
            if (!criticalErrors.isEmpty()) {
                model.addAttribute("study", study);
                model.addAttribute("measurementType", measurementType);
                // Get mapping details
                model.addAttribute("mappingDetails", associationOperationsService.createMappingDetails(associationToValidate));
                // Return any association errors
                model.addAttribute("errors", criticalErrors);
                model.addAttribute("criticalErrorsFound", true);
                if (associationToValidate.getSnpInteraction()) {
                    model.addAttribute("form", associationOperationsService.generateForm(associationToValidate));
                    return "redirect:/associations/" + associationToValidate.getId();
                // return "edit_snp_interaction_association";
                } else {
                    model.addAttribute("form", associationOperationsService.generateForm(associationToValidate));
                    // Determine view
                    if (associationToValidate.getMultiSnpHaplotype()) {
                        return "redirect:/associations/" + associationToValidate.getId();
                    // return "edit_multi_snp_association";
                    } else {
                        //                             return "edit_standard_snp_association";
                        return "redirect:/associations/" + associationToValidate.getId();
                    }
                }
            } else //     if there are no criticial errors, save the validation and go to the next association
            {
                // Save and validate form
                String eRelease = ensemblRestTemplateService.getRelease();
                Collection<AssociationValidationView> errors = associationOperationsService.validateAndSaveAssociation(study, associationToValidate, currentUserDetailsService.getUserFromRequest(request), eRelease);
                // Determine if we have any errors rather than warnings
                long errorCount = errors.stream().filter(validationError -> !validationError.getWarning()).count();
                //if there are errors rather than warnings, go straight to the page to edit
                if (errorCount > 0) {
                    model.addAttribute("study", study);
                    model.addAttribute("measurementType", measurementType);
                    // Get mapping details for association we're editing
                    model.addAttribute("mappingDetails", associationOperationsService.createMappingDetails(associationToValidate));
                    model.addAttribute("errors", errors);
                    model.addAttribute("criticalErrorsFound", true);
                    if (associationToValidate.getSnpInteraction()) {
                        model.addAttribute("form", associationOperationsService.generateForm(associationToValidate));
                        //                              return "edit_snp_interaction_association";
                        return "redirect:/associations/" + associationToValidate.getId();
                    } else {
                        model.addAttribute("form", associationOperationsService.generateForm(associationToValidate));
                        // Determine view
                        if (associationToValidate.getMultiSnpHaplotype()) {
                            //                                  return "edit_multi_snp_association";
                            return "redirect:/associations/" + associationToValidate.getId();
                        } else {
                            //                                  return "edit_standard_snp_association";
                            return "redirect:/associations/" + associationToValidate.getId();
                        }
                    }
                }
            }
        }
    }
    String message = "Mapping complete, please check for any errors displayed in the 'Errors' column";
    redirectAttributes.addFlashAttribute("mappingComplete", message);
    return "redirect:/studies/" + studyId + "/associations";
}

Example 8 with Model

use of org.springframework.ui.Model in project Asqatasun by Asqatasun.

the class UserManagementControllerTest method testDisplayAdminPageWithDeletedUserMessage.

/**
     * Test of displayAdminPage method, of class UserManagementController.
     */
public void testDisplayAdminPageWithDeletedUserMessage() {
    System.out.println("DisplayAdminPageWithDeletedUserMessage");
    instance = new UserManagementController();
    setUpMockRoleDataService();
    setUpMockUserDataService(false, false, false, false, false);
    setUpMockAuthenticationContext();
    instance.setUserDataService(mockUserDataService);
    HttpServletResponse response = new MockHttpServletResponse();
    MockHttpServletRequest request = new MockHttpServletRequest();
    request.getSession().setAttribute(TgolKeyStore.DELETED_USER_NAME_KEY, "DeletedUserName");
    Model model = new ExtendedModelMap();
    String result = instance.displayAdminPage(request, response, model);
    assertEquals(TgolKeyStore.ADMIN_VIEW_NAME, result);
    assertTrue(model.asMap().containsKey(TgolKeyStore.DELETED_USER_NAME_KEY));
    assertEquals(model.asMap().get(TgolKeyStore.DELETED_USER_NAME_KEY), "DeletedUserName");
}

Example 9 with Model

use of org.springframework.ui.Model in project Asqatasun by Asqatasun.

the class UserManagementControllerTest method testSubmitEditCurrentUserForm.

/**
     * Test of submitEditUserForm method, of class UserManagementController.
     */
public void testSubmitEditCurrentUserForm() throws Exception {
    System.out.println("testSubmitEditCurrentUserForm");
    instance = new UserManagementController();
    setUpMockRoleDataService();
    setUpMockUserDataService(false, false, false, false, true);
    setUpMockAuthenticationContext();
    instance.setUserDataService(mockUserDataService);
    CreateUserFormValidator createUserFormValidator = new CreateUserFormValidator();
    createUserFormValidator.setUserDataService(mockUserDataService);
    instance.setCreateUserFormValidator(createUserFormValidator);
    // Finally the form is conform and the admin page is returned
    CreateUserCommand createUserCommand = CreateUserCommandFactory.getInstance().getNewCreateUserCommand();
    createUserCommand.setEmail("admin@test.com");
    createUserCommand.setLastName("newName");
    createUserCommand.setFirstName("newFirstName");
    createUserCommand.setPhoneNumber("0102030405");
    createUserCommand.setActivated(false);
    createUserCommand.setAdmin(false);
    MockHttpServletRequest request = new MockHttpServletRequest();
    request.getSession().setAttribute(TgolKeyStore.USER_ID_KEY, Long.valueOf(4));
    BindingResult bindingResult = new BeanPropertyBindingResult(createUserCommand, "createUserCommand");
    Model model = new ExtendedModelMap();
    String result = instance.submitEditUserForm(createUserCommand, bindingResult, request, model);
    assertEquals(TgolKeyStore.ADMIN_VIEW_NAME, result);
    assertFalse(bindingResult.hasErrors());
    assertTrue(bindingResult.getFieldErrors().isEmpty());
    assertEquals(2, model.asMap().size());
    assertEquals("admin@test.com", model.asMap().get(TgolKeyStore.UPDATED_USER_NAME_KEY));
    assertTrue(((List<User>) model.asMap().get(TgolKeyStore.USER_LIST_KEY)).isEmpty());
}

Example 10 with Model

use of org.springframework.ui.Model in project Asqatasun by Asqatasun.

the class UserManagementControllerTest method testSubmitAddAdminUserForm.

/**
     * Test of submitAddUserForm method, of class UserManagementController.
     */
public void testSubmitAddAdminUserForm() throws Exception {
    System.out.println("SubmitAddAdminUserForm");
    instance = new UserManagementController();
    setUpMockRoleDataService();
    setUpMockUserDataService(false, true, true, false, false);
    setUpMockAuthenticationContext();
    instance.setUserDataService(mockUserDataService);
    CreateUserFormValidator createUserFormValidator = new CreateUserFormValidator();
    createUserFormValidator.setUserDataService(mockUserDataService);
    instance.setCreateUserFormValidator(createUserFormValidator);
    // Finally the form is conform and the admin page is returned
    CreateUserCommand createUserCommand = CreateUserCommandFactory.getInstance().getNewCreateUserCommand();
    createUserCommand.setSiteUrl("http://www.newSite.com/");
    createUserCommand.setEmail("newUser@test.com");
    createUserCommand.setPassword("P4sSw0rD");
    createUserCommand.setConfirmPassword("P4sSw0rD");
    createUserCommand.setAdmin(true);
    createUserCommand.setActivated(true);
    BindingResult bindingResult = new BeanPropertyBindingResult(createUserCommand, "createUserCommand");
    Model model = new ExtendedModelMap();
    String result = instance.submitAddUserForm(createUserCommand, bindingResult, model);
    assertEquals(TgolKeyStore.ADMIN_VIEW_NAME, result);
    assertFalse(bindingResult.hasErrors());
    assertTrue(bindingResult.getFieldErrors().isEmpty());
    assertEquals(2, model.asMap().size());
    assertEquals("newUser@test.com", model.asMap().get(TgolKeyStore.ADDED_USER_NAME_KEY));
    assertTrue(((List<User>) model.asMap().get(TgolKeyStore.USER_LIST_KEY)).isEmpty());
}