Examples with CellQuanVCTranslator org.vcell.cellml.CellQuanVCTranslator used on opensource projects

Example 1 with CellQuanVCTranslator

use of org.vcell.cellml.CellQuanVCTranslator in project vcell by virtualcell.

the class XmlHelper method importMathCellML.

public static VCDocument importMathCellML(VCLogger vcLogger, XMLSource xmlSource) throws Exception {
    // checks that the string is not empty
    if (xmlSource == null) {
        throw new XmlParseException("Invalid params for importing cellml model to Mathmodel.");
    }
    Document xmlDoc = xmlSource.getXmlDoc();
    String xmlString = XmlUtil.xmlToString(xmlDoc, false);
    CellQuanVCTranslator cellmlTranslator = new CellQuanVCTranslator();
    VCDocument vcDoc = cellmlTranslator.translate(new StringReader(xmlString), false);
    vcDoc.refreshDependencies();
    return vcDoc;
}