Examples with BindingFeatureImpl org.vcell.pathway.BindingFeatureImpl used on opensource projects

Example 1 with BindingFeatureImpl

use of org.vcell.pathway.BindingFeatureImpl in project vcell by virtualcell.

the class PathwayReader method addObjectBindingFeature.

private BindingFeature addObjectBindingFeature(Element element) {
    BindingFeature bindingFeature = new BindingFeatureImpl();
    addAttributes(bindingFeature, element);
    for (Object child : element.getChildren()) {
        if (child instanceof Element) {
            Element childElement = (Element) child;
            if (!addContentBindingFeature(bindingFeature, element, childElement)) {
                showUnexpected(childElement, bindingFeature);
            }
        }
    }
    pathwayModel.add(bindingFeature);
    return bindingFeature;
}

Example 2 with BindingFeatureImpl

use of org.vcell.pathway.BindingFeatureImpl in project vcell by virtualcell.

the class PathwayReaderBiopax3 method addObjectBindingFeature.

private BindingFeature addObjectBindingFeature(Element element) {
    BindingFeature bindingFeature = new BindingFeatureImpl();
    addAttributes(bindingFeature, element);
    for (Object child : element.getChildren()) {
        if (child instanceof Element) {
            Element childElement = (Element) child;
            if (!addContentBindingFeature(bindingFeature, element, childElement)) {
                showUnexpected(childElement);
            }
        }
    }
    pathwayModel.add(bindingFeature);
    return bindingFeature;
}