Examples with HealthRestlet org.vcell.rest.health.HealthRestlet used on opensource projects

Example 1 with HealthRestlet

use of org.vcell.rest.health.HealthRestlet in project vcell by virtualcell.

the class VCellApiApplication method createInboundRoot.

@Override
public Restlet createInboundRoot() {
    System.setProperty("java.net.preferIPv4Stack", "true");
    /**
     * curl --insecure
     * "https://nrcamdev5.cam.uchc.edu:8080/access_token?user_id=schaff&user_password=056F4508E0DE1ED22D4D6F541E91460694A00E16&client_id=85133f8d-26f7-4247-8356-d175399fc2e6"
     *
     * {"token":"9002b7ba-004f-40aa-a639-9136364850a6","creationDateSeconds"
     * :1376586968,"expireDateSeconds":1376673368,"userId":"schaff",
     * "userKey":"17"}
     *
     * curl --verbose --insecure -H
     * "Authorization: CUSTOM access_token=9002b7ba-004f-40aa-a639-9136364850a6"
     * https://nrcamdev5.cam.uchc.edu:8080/simtask?running=on
     *
     * [{"simKey":"83642386","simName":"Simulation5","userName":"schaff",
     * "userKey"
     * :"17","htcJobId":"SGE:283488","status":"running","startdate":
     * 1375408007000
     * ,"jobIndex":0,"taskId":0,"message":"0.7202440000182919","site"
     * :"REL","computeHost"
     * :"compute-2-0.local","schedulerStatus":"running","hasData"
     * :true,"scanCount"
     * :1,"bioModelLink":{"bioModelKey":"83642503","bioModelBranchId"
     * :"83640470"
     * ,"bioModelName":"CSHL 2011 Exercise 6_Jim_2013","simContextKey"
     * :"83642357","simContextBranchId":"83642358","simContextName":
     * "smoldyn_repressor_activator_oscillations"
     * }},{"simKey":"38442198","simName"
     * :"Simulation0","userName":"schaff","userKey"
     * :"17","status":"running","startdate"
     * :1264828384000,"jobIndex":0,"taskId"
     * :0,"message":"processing geometry..."
     * ,"site":"SCHAFF_WSAD","computeHost"
     * :"\u003c\u003clocal\u003e\u003e","schedulerStatus"
     * :"running","hasData"
     * :false,"scanCount":1,"mathModelLink":{"mathModelKey"
     * :"38442201","mathModelBranchId"
     * :"38442202","mathModelName":"tempMath77"}}]
     */
    // Attach a guard to secure access to user parts of the api
    boolean bCookieOptional = true;
    final VCellCookieAuthenticator cookieAuthenticator = new VCellCookieAuthenticator(this, bCookieOptional, "My cookie realm", "MyExtraSecretKey".getBytes());
    cookieAuthenticator.setLoginPath("/" + LOGIN);
    cookieAuthenticator.setLogoutPath("/" + LOGOUT);
    cookieAuthenticator.setCookieName("org.vcell.auth");
    cookieAuthenticator.setLoginFormPath("/" + LOGINFORM);
    cookieAuthenticator.setIdentifierFormName(IDENTIFIER_FORMNAME);
    cookieAuthenticator.setSecretFormName(SECRET_FORMNAME);
    cookieAuthenticator.setRedirectQueryName(REDIRECTURL_FORMNAME);
    cookieAuthenticator.setVerifier(userVerifier);
    // 15 minutes (in units of seconds).
    cookieAuthenticator.setMaxCookieAge(15 * 60);
    String ROOT_URI = javascriptDir.toURI().toString();
    String WEBAPP_URI = new File(javascriptDir.getParentFile(), "webapp").toURI().toString();
    System.out.println("using uri=" + ROOT_URI + " for scripts directory");
    String SCRIPTS = "scripts";
    Router rootRouter = new Router(getContext());
    rootRouter.attach("/" + SCRIPTS, new Directory(getContext(), ROOT_URI));
    rootRouter.attach("/" + ACCESSTOKENRESOURCE, AccessTokenServerResource.class);
    rootRouter.attach("/" + WEBAPP, new Directory(getContext(), WEBAPP_URI));
    rootRouter.attach("/" + OPTIMIZATION, OptimizationRunServerResource.class);
    rootRouter.attach("/" + OPTIMIZATION + "/{" + OPTIMIZATIONID + "}", OptimizationServerResource.class);
    rootRouter.attach("/" + PUBLICATION, PublicationsServerResource.class);
    rootRouter.attach("/" + PUBLICATION + "/{" + PUBLICATIONID + "}", PublicationServerResource.class);
    rootRouter.attach("/" + BIOMODEL, BiomodelsServerResource.class);
    rootRouter.attach("/" + BIOMODEL + "/{" + BIOMODELID + "}", BiomodelServerResource.class);
    rootRouter.attach("/" + BIOMODEL + "/{" + BIOMODELID + "}/" + VCML_DOWNLOAD, BiomodelVCMLServerResource.class);
    rootRouter.attach("/" + BIOMODEL + "/{" + BIOMODELID + "}/" + DIAGRAM_DOWNLOAD, BiomodelDiagramServerResource.class);
    rootRouter.attach("/" + BIOMODEL + "/{" + BIOMODELID + "}/" + SIMULATION + "/{" + SIMULATIONID + "}", BiomodelSimulationServerResource.class);
    rootRouter.attach("/" + BIOMODEL + "/{" + BIOMODELID + "}/" + SIMULATION + "/{" + SIMULATIONID + "}/" + SAVESIMULATION, BiomodelSimulationSaveServerResource.class);
    rootRouter.attach("/" + BIOMODEL + "/{" + BIOMODELID + "}/" + SIMULATION + "/{" + SIMULATIONID + "}/" + STARTSIMULATION, BiomodelSimulationStartServerResource.class);
    rootRouter.attach("/" + BIOMODEL + "/{" + BIOMODELID + "}/" + SIMULATION + "/{" + SIMULATIONID + "}/" + STOPSIMULATION, BiomodelSimulationStopServerResource.class);
    rootRouter.attach("/" + SIMSTATUS, SimulationStatusServerResource.class);
    rootRouter.attach("/" + SIMTASK, SimulationTasksServerResource.class);
    rootRouter.attach("/" + SIMTASK + "/{" + SIMTASKID + "}", SimulationTaskServerResource.class);
    rootRouter.attach("/" + SIMDATA + "/{" + SIMDATAID + "}", SimDataServerResource.class);
    rootRouter.attach("/" + SIMDATA + "/{" + SIMDATAID + "}/jobindex/{" + JOBINDEX + "}", SimDataValuesServerResource.class);
    rootRouter.attach("/" + LOGIN, new LoginRestlet(getContext()));
    rootRouter.attach("/" + LOGINFORM, new LoginFormRestlet(getContext()));
    rootRouter.attach("/" + REGISTRATIONFORM, new RegistrationFormRestlet(getContext()));
    rootRouter.attach("/" + NEWUSER, new NewUserRestlet(getContext()));
    rootRouter.attach("/" + NEWUSER_VERIFY, new EmailTokenVerifyRestlet(getContext()));
    rootRouter.attach("/" + LOSTPASSWORD, new LostPasswordRestlet(getContext()));
    rootRouter.attach("/" + SWVERSION, new SWVersionRestlet(getContext()));
    rootRouter.attach("/" + RPC, new RpcRestlet(getContext()));
    rootRouter.attach("/" + EVENTS, new EventsRestlet(getContext()));
    rootRouter.attach("/" + HEALTH, new HealthRestlet(getContext()));
    rootRouter.attach("/" + ADMIN + "/" + ADMIN_JOBS, new AdminJobsRestlet(getContext()));
    rootRouter.attach("/auth/user", new Restlet(getContext()) {

        @Override
        public void handle(Request request, Response response) {
            if (request.getMethod().equals(Method.GET)) {
                VCellApiApplication application = ((VCellApiApplication) getApplication());
                User vcellUser = application.getVCellUser(request.getChallengeResponse(), AuthenticationPolicy.ignoreInvalidCredentials);
                String jsonString = "{}";
                if (vcellUser != null) {
                    jsonString = "{user: \"" + vcellUser.getName() + "\"}";
                }
                response.setEntity(new StringRepresentation(jsonString));
            }
        }
    });
    cookieAuthenticator.setNext(rootRouter);
    return cookieAuthenticator;
}