Examples with DataAccessException org.vcell.util.DataAccessException used on opensource projects

Example 31 with DataAccessException

use of org.vcell.util.DataAccessException in project vcell by virtualcell.

the class VirtualFrapWindowManager method startExport.

public void startExport(Component requester, OutputContext outContext, ExportSpecs exportSpecs) {
    try {
        ExportServiceImpl exportServiceImpl = new ExportServiceImpl();
        DataServerImpl dataServerImpl = new DataServerImpl(localWorkSpace.getDataSetControllerImpl(), exportServiceImpl);
        exportServiceImpl.addExportListener(new ExportListener() {

            public void exportMessage(ExportEvent event) {
                System.out.println(event.toString());
            }
        });
        exportServiceImpl.makeRemoteFile(null, LocalWorkspace.getDefaultOwner(), dataServerImpl, exportSpecs);
    } catch (DataAccessException e) {
        e.printStackTrace(System.out);
    } catch (FileNotFoundException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
    }
}

Example 32 with DataAccessException

use of org.vcell.util.DataAccessException in project vcell by virtualcell.

the class ClientDocumentManager method getBioModelFromDatabaseXML.

private BioModel getBioModelFromDatabaseXML(XMLHolder<BioModel> bioModelXMLHolder) throws DataAccessException {
    try {
        BioModel bm = bioModelXMLHolder.getDocument();
        if (bm == null) {
            bm = XmlHelper.XMLToBioModel(new XMLSource(bioModelXMLHolder.getXmlString()));
        }
        cacheSimulations(bm.getSimulations());
        // bm.refreshDependencies();
        return bm;
    } catch (XmlParseException e) {
        e.printStackTrace();
        throw new DataAccessException(e.getMessage());
    }
}

Example 33 with DataAccessException

use of org.vcell.util.DataAccessException in project vcell by virtualcell.

the class ClientDocumentManager method replacePreferences.

/**
 * This method was created in VisualAge.
 * @return void
 * @param key KeyValue
 * @exception org.vcell.util.DataAccessException The exception description.
 * @exception RemoteProxyException The exception description.
 */
public void replacePreferences(Preference[] argPreferences) throws DataAccessException {
    if (argPreferences == null) {
        throw new IllegalArgumentException("preferences were null");
    }
    System.out.println("ClientDocumentManager.replacePreferences()");
    if (!Compare.isEqual(argPreferences, getPreferences())) {
        try {
            sessionManager.getUserMetaDbServer().replacePreferences(argPreferences);
            preferences = argPreferences;
        } catch (RemoteProxyException e) {
            handleRemoteProxyException(e);
            throw new DataAccessException(e.getMessage());
        }
    }
}

Example 34 with DataAccessException

use of org.vcell.util.DataAccessException in project vcell by virtualcell.

the class ClientDocumentManager method saveAsNew.

/**
 * Insert the method's description here.
 * Creation date: (1/19/01 11:27:52 AM)
 */
public MathModel saveAsNew(MathModel mathModel, java.lang.String newName, String[] independentSims) throws DataAccessException {
    try {
        String mathModelXML = null;
        try {
            mathModelXML = XmlHelper.mathModelToXML(mathModel);
        } catch (XmlParseException e) {
            e.printStackTrace(System.out);
            throw new DataAccessException(e.getMessage());
        }
        // System.out.println(mathModelXML);
        String savedMathModelXML = sessionManager.getUserMetaDbServer().saveMathModelAs(new BigString(mathModelXML), newName, independentSims).toString();
        MathModel savedMathModel = getMathModelFromDatabaseXML(new XMLHolder<MathModel>(savedMathModelXML));
        KeyValue savedKey = savedMathModel.getVersion().getVersionKey();
        if (xmlHash.get(savedKey) == null) {
            xmlHash.put(savedKey, savedMathModelXML);
        }
        MathModelInfo savedMathModelInfo = new MathModelInfo(savedMathModel.getVersion(), savedMathModel.getMathDescription().getKey(), savedMathModel.createMathModelChildSummary(), VCellSoftwareVersion.fromSystemProperty());
        mathModelInfoHash.put(savedKey, savedMathModelInfo);
        updateGeometryRelatedHashes(savedMathModel.getMathDescription().getGeometry());
        fireDatabaseInsert(new DatabaseEvent(this, DatabaseEvent.INSERT, null, savedMathModelInfo));
        return savedMathModel;
    } catch (RemoteProxyException e) {
        e.printStackTrace(System.out);
        throw new DataAccessException(VCellErrorMessages.FAIL_SAVE_MESSAGE + "\n\n" + e.getMessage());
    }
}

Example 35 with DataAccessException

use of org.vcell.util.DataAccessException in project vcell by virtualcell.

the class ClientDocumentManager method saveFieldData.

public ExternalDataIdentifier saveFieldData(FieldDataFileOperationSpec fdos, String fieldDataBaseName) throws DataAccessException {
    FieldDataDBOperationResults fieldDataResults = fieldDataDBOperation(FieldDataDBOperationSpec.createGetExtDataIDsSpec(getUser()));
    ExternalDataIdentifier[] existingExternalIDs = fieldDataResults.extDataIDArr;
    // find available field data name (starting from init).
    for (ExternalDataIdentifier externalID : existingExternalIDs) {
        if (externalID.getName().equals(fieldDataBaseName)) {
            fieldDataBaseName = TokenMangler.getNextEnumeratedToken(fieldDataBaseName);
        }
    }
    FieldDataDBOperationSpec newExtDataIDSpec = FieldDataDBOperationSpec.createSaveNewExtDataIDSpec(getUser(), fieldDataBaseName, "");
    ExternalDataIdentifier eid = fieldDataDBOperation(newExtDataIDSpec).extDataID;
    fdos.specEDI = eid;
    fdos.annotation = "";
    try {
        // Add to Server Disk
        FieldDataFileOperationResults fdor = fieldDataFileOperation(fdos);
        LG.debug(fdor);
    } catch (DataAccessException e) {
        try {
            // try to cleanup new ExtDataID
            fieldDataDBOperation(FieldDataDBOperationSpec.createDeleteExtDataIDSpec(fdos.specEDI));
        } catch (Exception e2) {
        // ignore
        }
        fdos.specEDI = null;
        throw e;
    }
    return eid;
}