Examples with DataAccessException org.vcell.util.DataAccessException used on opensource projects

Example 41 with DataAccessException

use of org.vcell.util.DataAccessException in project vcell by virtualcell.

the class ClientDocumentManager method save.

/**
 * Insert the method's description here.
 * Creation date: (10/28/00 12:08:30 AM)
 */
public MathModel save(MathModel mathModel, String[] independentSims) throws DataAccessException {
    try {
        String mathModelXML = null;
        try {
            mathModelXML = XmlHelper.mathModelToXML(mathModel);
            if (LG.isInfoEnabled()) {
                LG.info(XmlUtil.beautify(mathModelXML));
            }
        } catch (XmlParseException e) {
            e.printStackTrace(System.out);
            throw new DataAccessException(e.getMessage());
        }
        String savedMathModelXML = sessionManager.getUserMetaDbServer().saveMathModel(new BigString(mathModelXML), independentSims).toString();
        MathModel savedMathModel = getMathModelFromDatabaseXML(new XMLHolder<MathModel>(savedMathModelXML));
        if (LG.isInfoEnabled()) {
            LG.info(XmlUtil.beautify(savedMathModelXML));
        }
        KeyValue savedKey = savedMathModel.getVersion().getVersionKey();
        if (xmlHash.get(savedKey) == null) {
            xmlHash.put(savedKey, savedMathModelXML);
        }
        MathModelInfo savedMathModelInfo = new MathModelInfo(savedMathModel.getVersion(), savedMathModel.getMathDescription().getKey(), savedMathModel.createMathModelChildSummary(), VCellSoftwareVersion.fromSystemProperty());
        mathModelInfoHash.put(savedKey, savedMathModelInfo);
        updateGeometryRelatedHashes(savedMathModel.getMathDescription().getGeometry());
        fireDatabaseInsert(new DatabaseEvent(this, DatabaseEvent.INSERT, null, savedMathModelInfo));
        return savedMathModel;
    } catch (RemoteProxyException e) {
        e.printStackTrace(System.out);
        throw new DataAccessException(VCellErrorMessages.FAIL_SAVE_MESSAGE + "\n\n" + e.getMessage());
    }
}

Example 42 with DataAccessException

use of org.vcell.util.DataAccessException in project vcell by virtualcell.

the class ClientDocumentManager method addUserToGroup.

/**
 * Insert the method's description here.
 * Creation date: (11/28/00 5:43:44 PM)
 * @param bioModelInfo cbit.vcell.biomodel.BioModelInfo
 */
public VCImageInfo addUserToGroup(VCImageInfo imageInfo, String userToAdd) throws DataAccessException {
    try {
        // 
        // publish from database
        // 
        VCImageInfo newImageInfo = (VCImageInfo) addUserToGroup0(imageInfo, VersionableType.VCImage, imgInfoHash, userToAdd);
        // 
        // delete Image from cache
        // 
        xmlHash.remove(imageInfo.getVersion().getVersionKey());
        fireDatabaseUpdate(new DatabaseEvent(this, DatabaseEvent.UPDATE, imageInfo, newImageInfo));
        return newImageInfo;
    } catch (RemoteProxyException e) {
        handleRemoteProxyException(e);
        throw new DataAccessException(e.getMessage());
    }
}

Example 43 with DataAccessException

use of org.vcell.util.DataAccessException in project vcell by virtualcell.

the class ClientDocumentManager method removeUserFromGroup.

/**
 * Insert the method's description here.
 * Creation date: (11/28/00 5:43:44 PM)
 * @param bioModelInfo cbit.vcell.biomodel.BioModelInfo
 */
public MathModelInfo removeUserFromGroup(MathModelInfo mathModelInfo, String userToRemove) throws DataAccessException {
    try {
        // 
        // publish from database
        // 
        MathModelInfo newMathModelInfo = (MathModelInfo) removeUserFromGroup0(mathModelInfo, VersionableType.MathModelMetaData, mathModelInfoHash, userToRemove);
        // 
        // delete MathModelMetaData from cache
        // 
        xmlHash.remove(mathModelInfo.getVersion().getVersionKey());
        fireDatabaseUpdate(new DatabaseEvent(this, DatabaseEvent.UPDATE, mathModelInfo, newMathModelInfo));
        return newMathModelInfo;
    } catch (RemoteProxyException e) {
        handleRemoteProxyException(e);
        throw new DataAccessException(e.getMessage());
    }
}

Example 44 with DataAccessException

use of org.vcell.util.DataAccessException in project vcell by virtualcell.

the class ClientDocumentManager method addUserToGroup.

/**
 * Insert the method's description here.
 * Creation date: (11/28/00 5:43:44 PM)
 * @param bioModelInfo cbit.vcell.biomodel.BioModelInfo
 */
public BioModelInfo addUserToGroup(BioModelInfo bioModelInfo, String userToAdd) throws DataAccessException {
    try {
        // 
        // publish from database
        // 
        BioModelInfo newBioModelInfo = (BioModelInfo) addUserToGroup0(bioModelInfo, VersionableType.BioModelMetaData, bioModelInfoHash, userToAdd);
        // 
        // delete BioModelMetaData from cache
        // 
        xmlHash.remove(bioModelInfo.getVersion().getVersionKey());
        fireDatabaseUpdate(new DatabaseEvent(this, DatabaseEvent.UPDATE, bioModelInfo, newBioModelInfo));
        return newBioModelInfo;
    } catch (RemoteProxyException e) {
        handleRemoteProxyException(e);
        throw new DataAccessException(e.getMessage());
    }
}

Example 45 with DataAccessException

use of org.vcell.util.DataAccessException in project vcell by virtualcell.

the class ClientDocumentManager method saveAsNew.

/**
 * Insert the method's description here.
 * Creation date: (2/5/01 4:58:40 PM)
 */
public VCImage saveAsNew(VCImage vcImage, java.lang.String newName) throws DataAccessException {
    try {
        String vcImageXML = null;
        try {
            vcImageXML = XmlHelper.imageToXML(vcImage);
        } catch (XmlParseException e) {
            e.printStackTrace(System.out);
            throw new DataAccessException(e.getMessage());
        }
        String savedVCImageXML = sessionManager.getUserMetaDbServer().saveVCImageAs(new BigString(vcImageXML), newName).toString();
        VCImage savedVCImage = null;
        try {
            savedVCImage = XmlHelper.XMLToImage(savedVCImageXML);
        } catch (XmlParseException e) {
            e.printStackTrace(System.out);
            throw new DataAccessException(e.getMessage());
        }
        savedVCImage.refreshDependencies();
        KeyValue savedKey = savedVCImage.getVersion().getVersionKey();
        if (xmlHash.get(savedKey) == null) {
            xmlHash.put(savedKey, savedVCImageXML);
        }
        try {
            ISize size = new ISize(savedVCImage.getNumX(), savedVCImage.getNumY(), savedVCImage.getNumZ());
            GIFImage browseData = BrowseImage.makeBrowseGIFImage(savedVCImage);
            VCImageInfo savedVCImageInfo = new VCImageInfo(savedVCImage.getVersion(), size, savedVCImage.getExtent(), browseData, VCellSoftwareVersion.fromSystemProperty());
            imgInfoHash.put(savedKey, savedVCImageInfo);
            fireDatabaseInsert(new DatabaseEvent(this, DatabaseEvent.INSERT, null, savedVCImageInfo));
        } catch (Exception e) {
            e.printStackTrace(System.out);
        }
        return savedVCImage;
    } catch (RemoteProxyException e) {
        e.printStackTrace(System.out);
        throw new DataAccessException(VCellErrorMessages.FAIL_SAVE_MESSAGE + "\n\n" + e.getMessage());
    }
}