Examples with BioModelInfo org.vcell.util.document.BioModelInfo used on opensource projects

Example 11 with BioModelInfo

use of org.vcell.util.document.BioModelInfo in project vcell by virtualcell.

the class VCDocumentDbTreeModel method initOwners.

protected static synchronized TreeMap<String, BioModelNode> initOwners(VCDocumentInfo[] vcDocumentInfos, User loginUser, VCDocumentDbTreeModel subTreeParent, Method subTreeMethod) {
    // 
    // get list of users (owners)
    // 
    Vector<User> userList = new Vector<User>();
    userList.addElement(loginUser);
    for (int i = 0; i < vcDocumentInfos.length; i++) {
        VCDocumentInfo vcDocumentInfo = vcDocumentInfos[i];
        if (!userList.contains(vcDocumentInfo.getVersion().getOwner())) {
            userList.addElement(vcDocumentInfo.getVersion().getOwner());
        }
    }
    // 
    // for each user
    // 
    TreeMap<String, BioModelNode> treeMap = new TreeMap<String, BioModelNode>(new Comparator<String>() {

        public int compare(String o1, String o2) {
            return o1.compareToIgnoreCase(o2);
        }
    });
    for (int ownerIndex = 0; ownerIndex < userList.size(); ownerIndex++) {
        User owner = (User) userList.elementAt(ownerIndex);
        BioModelNode ownerNode = null;
        try {
            if (vcDocumentInfos instanceof BioModelInfo[]) {
                ownerNode = (BioModelNode) subTreeMethod.invoke(subTreeParent, new Object[] { owner, (BioModelInfo[]) vcDocumentInfos });
            } else if (vcDocumentInfos instanceof MathModelInfo[]) {
                ownerNode = (BioModelNode) subTreeMethod.invoke(subTreeParent, new Object[] { owner, (MathModelInfo[]) vcDocumentInfos });
            } else if (vcDocumentInfos instanceof GeometryInfo[]) {
                ownerNode = (BioModelNode) subTreeMethod.invoke(subTreeParent, new Object[] { owner, (GeometryInfo[]) vcDocumentInfos });
            } else {
                throw new Exception("Unimplemented VCDocumentInfo type=" + vcDocumentInfos.getClass().getName());
            }
        } catch (Exception e) {
            ownerNode = new BioModelNode("Error" + e.getMessage());
        }
        if (owner.equals(loginUser) || ownerNode.getChildCount() > 0) {
            treeMap.put(owner.getName(), ownerNode);
        }
    }
    return treeMap;
}

Example 12 with BioModelInfo

use of org.vcell.util.document.BioModelInfo in project vcell by virtualcell.

the class BioModelDbTreeModel method databaseDelete.

/**
 * @param event cbit.vcell.clientdb.DatabaseEvent
 */
public void databaseDelete(DatabaseEvent databaseEvent) {
    if (databaseEvent.getOldVersionInfo() instanceof BioModelInfo) {
        BioModelInfo removedBioModelInfo = (BioModelInfo) databaseEvent.getOldVersionInfo();
        BioModelNode removedNode = ((BioModelNode) getRoot()).findNodeByUserObject(removedBioModelInfo);
        if (removedNode != null) {
            if (removedNode.getParent() != null && removedNode.getSiblingCount() == 1) {
                // just this one version
                removedNode = (BioModelNode) removedNode.getParent();
            }
            removeNodeFromParent(removedNode);
        }
    }
}

Example 13 with BioModelInfo

use of org.vcell.util.document.BioModelInfo in project vcell by virtualcell.

the class BioModelDbTreePanel method documentManager_DatabaseDelete.

/**
 * Comment
 */
protected void documentManager_DatabaseDelete(DatabaseEvent event) {
    if (event.getOldVersionInfo() instanceof BioModelInfo && getSelectedVersionInfo() instanceof BioModelInfo) {
        BioModelInfo selectedBMInfo = (BioModelInfo) getSelectedVersionInfo();
        BioModelInfo eventBMInfo = (BioModelInfo) event.getOldVersionInfo();
        if (eventBMInfo.getVersion().getVersionKey().equals(selectedBMInfo.getVersion().getVersionKey())) {
            setSelectedVersionInfo(null);
            getJTree1().getSelectionModel().clearSelection();
        }
    }
}

Example 14 with BioModelInfo

use of org.vcell.util.document.BioModelInfo in project vcell by virtualcell.

the class BioModelDbTreePanel method actionsOnClick.

/**
 * Comment
 */
protected void actionsOnClick(MouseEvent mouseEvent) {
    if (mouseEvent.isPopupTrigger()) {
        if (!getPopupMenuDisabled()) {
            TreePath treePath = ((JTree) mouseEvent.getSource()).getPathForLocation(mouseEvent.getX(), mouseEvent.getY());
            ((JTree) mouseEvent.getSource()).setSelectionPath(treePath);
            if (getSelectedVersionInfo() instanceof BioModelInfo) {
                Version version = getSelectedVersionInfo().getVersion();
                boolean isOwner = version.getOwner().compareEqual(getDocumentManager().getUser());
                configureArhivePublishMenuState(version, isOwner);
                getJMenuItemPermission().setEnabled(isOwner && !version.getFlag().compareEqual(VersionFlag.Published));
                getJMenuItemDelete().setEnabled(isOwner && !version.getFlag().compareEqual(VersionFlag.Archived) && !version.getFlag().compareEqual(VersionFlag.Published));
                compareWithMenuItemEnable(getSelectedVersionInfo());
                getBioModelPopupMenu().show(getJTree1(), mouseEvent.getPoint().x, mouseEvent.getPoint().y);
            }
        }
    } else {
        ifNeedsDoubleClickEvent(mouseEvent, BioModelInfo.class);
    }
}

Example 15 with BioModelInfo

use of org.vcell.util.document.BioModelInfo in project vcell by virtualcell.

the class BioModelDbTreePanel method compareWithMenuItemEnable.

/**
 * Comment
 */
private void compareWithMenuItemEnable(VersionInfo vInfo) {
    boolean bPreviousEditionMenuItem = false;
    boolean bLatestEditionMenuItem = false;
    boolean bAnotherEditionMenuItem = false;
    BioModelInfo thisBioModelInfo = (BioModelInfo) vInfo;
    // 
    try {
        BioModelInfo[] bioModelVersionsList = getBioModelVersionDates(thisBioModelInfo);
        if (bioModelVersionsList != null && bioModelVersionsList.length > 0) {
            bAnotherEditionMenuItem = true;
            // 
            // Obtaining the previous version of the current biomodel.
            // 
            BioModelInfo previousBioModelInfo = bioModelVersionsList[0];
            boolean bPrevious = false;
            for (int i = 0; i < bioModelVersionsList.length; i++) {
                if (bioModelVersionsList[i].getVersion().getDate().before(thisBioModelInfo.getVersion().getDate())) {
                    bPrevious = true;
                    previousBioModelInfo = bioModelVersionsList[i];
                } else {
                    break;
                }
            }
            if (previousBioModelInfo.equals(bioModelVersionsList[0]) && !bPrevious) {
                bPreviousEditionMenuItem = false;
            } else {
                bPreviousEditionMenuItem = true;
            }
            // 
            // Obtaining the latest version of the current biomodel
            // 
            BioModelInfo latestBioModelInfo = bioModelVersionsList[bioModelVersionsList.length - 1];
            for (int i = 0; i < bioModelVersionsList.length; i++) {
                if (bioModelVersionsList[i].getVersion().getDate().after(latestBioModelInfo.getVersion().getDate())) {
                    latestBioModelInfo = bioModelVersionsList[i];
                }
            }
            if (thisBioModelInfo.getVersion().getDate().after(latestBioModelInfo.getVersion().getDate())) {
                bLatestEditionMenuItem = false;
            } else {
                bLatestEditionMenuItem = true;
            }
        }
    } catch (DataAccessException e) {
        e.printStackTrace();
    }
    getJPreviousEditionMenuItem().setEnabled(bPreviousEditionMenuItem);
    getLatestEditionMenuItem().setEnabled(bLatestEditionMenuItem);
    getAnotherEditionMenuItem().setEnabled(bAnotherEditionMenuItem);
}