Examples with VCDocumentInfo org.vcell.util.document.VCDocumentInfo used on opensource projects

Example 1 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class ClientRequestManager method processComparisonResult.

public void processComparisonResult(TMLPanel comparePanel, TopLevelWindowManager requester) {
    if (comparePanel == null || requester == null) {
        throw new IllegalArgumentException("Invalid params: " + comparePanel + " " + requester);
    }
    try {
        final VCDocument vcDoc = comparePanel.processComparisonResult();
        if (requester instanceof DatabaseWindowManager) {
            final DatabaseWindowManager dataWinManager = (DatabaseWindowManager) requester;
            final VCDocumentInfo vcDocInfo = getMatchingDocumentInfo(vcDoc);
            this.openDocument(vcDocInfo, dataWinManager, true);
            Thread waiter = new Thread() {

                public void run() {
                    try {
                        BeanUtils.setCursorThroughout((Container) dataWinManager.getComponent(), Cursor.getPredefinedCursor(Cursor.WAIT_CURSOR));
                        while (bOpening) {
                            try {
                                Thread.sleep(100);
                            } catch (InterruptedException e) {
                            }
                        }
                        String ID = vcDocInfo.getVersion().getVersionKey().toString();
                        DocumentWindowManager dwm = (DocumentWindowManager) ClientRequestManager.this.getMdiManager().getWindowManager(ID);
                        dwm.resetDocument(vcDoc);
                    } finally {
                        BeanUtils.setCursorThroughout((Container) dataWinManager.getComponent(), Cursor.getPredefinedCursor(Cursor.DEFAULT_CURSOR));
                    }
                }
            };
            waiter.start();
        } else if (requester instanceof DocumentWindowManager) {
            DocumentWindowManager docWinManager = (DocumentWindowManager) requester;
            docWinManager.resetDocument(vcDoc);
        } else {
            throw new IllegalArgumentException("Invalid TopLevelWindowManager instance: " + requester.getClass().getName());
        }
        System.out.println("Processing new model ..." + vcDoc.getVersion().getName());
    } catch (Exception e) {
        e.printStackTrace(System.out);
        throw new RuntimeException(e.getMessage());
    }
}

Example 2 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class ClientRequestManager method openAfterChecking.

private void openAfterChecking(VCDocumentInfo documentInfo, final TopLevelWindowManager requester, final boolean inNewWindow) {
    final String DOCUMENT_INFO = "documentInfo";
    final String SEDML_TASK = "SedMLTask";
    final String SEDML_MODEL = "SedMLModel";
    final String BNG_UNIT_SYSTEM = "bngUnitSystem";
    /* asynchronous and not blocking any window */
    bOpening = true;
    Hashtable<String, Object> hashTable = new Hashtable<String, Object>();
    // may want to insert corrected VCDocumentInfo later if our import debugger corrects it (BNGL Debugger).
    hashTable.put(DOCUMENT_INFO, documentInfo);
    // start a thread that gets it and updates the GUI by creating a new document desktop
    String taskName = null;
    if (documentInfo instanceof ExternalDocInfo) {
        taskName = "Importing document";
        ExternalDocInfo externalDocInfo = (ExternalDocInfo) documentInfo;
        File file = externalDocInfo.getFile();
        if (file != null && !file.getName().isEmpty() && file.getName().endsWith("bngl")) {
            BngUnitSystem bngUnitSystem = new BngUnitSystem(BngUnitOrigin.DEFAULT);
            String fileText;
            String originalFileText;
            try {
                fileText = BeanUtils.readBytesFromFile(file, null);
                originalFileText = new String(fileText);
            } catch (IOException e1) {
                e1.printStackTrace();
                DialogUtils.showErrorDialog(requester.getComponent(), "<html>Error reading file " + file.getPath() + "</html>");
                return;
            }
            Reader reader = externalDocInfo.getReader();
            boolean bException = true;
            while (bException) {
                try {
                    BioModel bioModel = createDefaultBioModelDocument(bngUnitSystem);
                    boolean bStochastic = true;
                    boolean bRuleBased = true;
                    SimulationContext ruleBasedSimContext = bioModel.addNewSimulationContext("temp NFSim app", SimulationContext.Application.RULE_BASED_STOCHASTIC);
                    List<SimulationContext> appList = new ArrayList<SimulationContext>();
                    appList.add(ruleBasedSimContext);
                    RbmModelContainer rbmModelContainer = bioModel.getModel().getRbmModelContainer();
                    RbmUtils.reactionRuleLabelIndex = 0;
                    RbmUtils.reactionRuleNames.clear();
                    ASTModel astModel = RbmUtils.importBnglFile(reader);
                    // for now, hasUnitSystem() always returns false
                    if (astModel.hasUnitSystem()) {
                        bngUnitSystem = astModel.getUnitSystem();
                    }
                    if (astModel.hasCompartments()) {
                        Structure struct = bioModel.getModel().getStructure(0);
                        if (struct != null) {
                            bioModel.getModel().removeStructure(struct);
                        }
                    }
                    BnglObjectConstructionVisitor constructionVisitor = null;
                    if (!astModel.hasMolecularDefinitions()) {
                        System.out.println("Molecular Definition Block missing.");
                        constructionVisitor = new BnglObjectConstructionVisitor(bioModel.getModel(), appList, bngUnitSystem, false);
                    } else {
                        constructionVisitor = new BnglObjectConstructionVisitor(bioModel.getModel(), appList, bngUnitSystem, true);
                    }
                    astModel.jjtAccept(constructionVisitor, rbmModelContainer);
                    bException = false;
                } catch (final Exception e) {
                    e.printStackTrace(System.out);
                    BNGLDebuggerPanel panel = new BNGLDebuggerPanel(fileText, e);
                    int oKCancel = DialogUtils.showComponentOKCancelDialog(requester.getComponent(), panel, "Bngl Debugger: " + file.getName());
                    if (oKCancel == JOptionPane.CANCEL_OPTION || oKCancel == JOptionPane.DEFAULT_OPTION) {
                        throw new UserCancelException("Canceling Import");
                    }
                    // inserting <potentially> corrected DocumentInfo
                    fileText = panel.getText();
                    externalDocInfo = new ExternalDocInfo(panel.getText());
                    reader = externalDocInfo.getReader();
                    hashTable.put(DOCUMENT_INFO, externalDocInfo);
                }
            }
            if (!originalFileText.equals(fileText)) {
                // file has been modified
                String message = "Importing <b>" + file.getName() + "</b> into vCell. <br>Overwrite the file on the disk?<br>";
                message = "<html>" + message + "</html>";
                Object[] options = { "Overwrite and Import", "Import Only", "Cancel" };
                int returnCode = JOptionPane.showOptionDialog(requester.getComponent(), message, "Bngl Debugger", JOptionPane.YES_NO_CANCEL_OPTION, JOptionPane.QUESTION_MESSAGE, null, options, options[2]);
                if (returnCode == JOptionPane.YES_OPTION) {
                    try {
                        FileWriter fw = new FileWriter(file);
                        fw.write(fileText);
                        fw.close();
                    } catch (IOException e) {
                        e.printStackTrace();
                    }
                } else if (returnCode == JOptionPane.CANCEL_OPTION || returnCode == JOptionPane.CLOSED_OPTION) {
                    return;
                }
            }
            if (!(bngUnitSystem.getOrigin() == BngUnitOrigin.PARSER)) {
                BNGLUnitsPanel panel = new BNGLUnitsPanel(bngUnitSystem);
                int oKCancel = DialogUtils.showComponentOKCancelDialog(requester.getComponent(), panel, " Bngl Units Selector", null, false);
                if (oKCancel == JOptionPane.CANCEL_OPTION || oKCancel == JOptionPane.DEFAULT_OPTION) {
                    // TODO: or do nothing and continue with default values?
                    return;
                } else {
                    bngUnitSystem = panel.getUnits();
                }
            }
            hashTable.put(BNG_UNIT_SYSTEM, bngUnitSystem);
        } else if (file != null && !file.getName().isEmpty() && file.getName().toLowerCase().endsWith(".sedml")) {
            try {
                XMLSource xmlSource = externalDocInfo.createXMLSource();
                File sedmlFile = xmlSource.getXmlFile();
                SedML sedml = Libsedml.readDocument(sedmlFile).getSedMLModel();
                if (sedml == null || sedml.getModels().isEmpty()) {
                    return;
                }
                AbstractTask chosenTask = SEDMLChooserPanel.chooseTask(sedml, requester.getComponent(), file.getName());
                hashTable.put(SEDML_MODEL, sedml);
                hashTable.put(SEDML_TASK, chosenTask);
            } catch (Exception e) {
                e.printStackTrace();
                throw new RuntimeException("failed to read document: " + e.getMessage(), e);
            }
        } else if (file != null && !file.getName().isEmpty() && (file.getName().toLowerCase().endsWith(".sedx") || file.getName().toLowerCase().endsWith(".omex"))) {
            try {
                ArchiveComponents ac = null;
                ac = Libsedml.readSEDMLArchive(new FileInputStream(file));
                SEDMLDocument doc = ac.getSedmlDocument();
                SedML sedml = doc.getSedMLModel();
                if (sedml == null) {
                    throw new RuntimeException("Failed importing " + file.getName());
                }
                if (sedml.getModels().isEmpty()) {
                    throw new RuntimeException("Unable to find any model in " + file.getName());
                }
                AbstractTask chosenTask = SEDMLChooserPanel.chooseTask(sedml, requester.getComponent(), file.getName());
                hashTable.put(SEDML_MODEL, sedml);
                hashTable.put(SEDML_TASK, chosenTask);
            } catch (Exception e) {
                e.printStackTrace();
                throw new RuntimeException("failed to read archive: " + e.getMessage(), e);
            }
        }
    } else {
        taskName = "Loading document '" + documentInfo.getVersion().getName() + "' from database";
    }
    AsynchClientTask task0 = new AsynchClientTask(taskName, AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        public void run(Hashtable<String, Object> hashTable) throws Exception {
            if (!inNewWindow) {
                // request was to replace the document in an existing window
                getMdiManager().blockWindow(requester.getManagerID());
            }
        }
    };
    AsynchClientTask task1 = new AsynchClientTask(taskName, AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            VCDocument doc = null;
            VCDocumentInfo documentInfo = (VCDocumentInfo) hashTable.get(DOCUMENT_INFO);
            if (documentInfo instanceof BioModelInfo) {
                BioModelInfo bmi = (BioModelInfo) documentInfo;
                doc = getDocumentManager().getBioModel(bmi);
            } else if (documentInfo instanceof MathModelInfo) {
                MathModelInfo mmi = (MathModelInfo) documentInfo;
                doc = getDocumentManager().getMathModel(mmi);
            } else if (documentInfo instanceof GeometryInfo) {
                GeometryInfo gmi = (GeometryInfo) documentInfo;
                doc = getDocumentManager().getGeometry(gmi);
            } else if (documentInfo instanceof ExternalDocInfo) {
                ExternalDocInfo externalDocInfo = (ExternalDocInfo) documentInfo;
                File file = externalDocInfo.getFile();
                if (file != null && !file.getName().isEmpty() && (file.getName().toLowerCase().endsWith(".sedx") || file.getName().toLowerCase().endsWith(".omex"))) {
                    TranslationLogger transLogger = new TranslationLogger(requester);
                    doc = XmlHelper.sedmlToBioModel(transLogger, externalDocInfo, (SedML) hashTable.get(SEDML_MODEL), (AbstractTask) hashTable.get(SEDML_TASK));
                } else if (!externalDocInfo.isXML()) {
                    if (hashTable.containsKey(BNG_UNIT_SYSTEM)) {
                        // not XML, look for BNGL etc.
                        // we use the BngUnitSystem already created during the 1st pass
                        BngUnitSystem bngUnitSystem = (BngUnitSystem) hashTable.get(BNG_UNIT_SYSTEM);
                        BioModel bioModel = createDefaultBioModelDocument(bngUnitSystem);
                        SimulationContext ruleBasedSimContext = bioModel.addNewSimulationContext("NFSim app", SimulationContext.Application.RULE_BASED_STOCHASTIC);
                        SimulationContext odeSimContext = bioModel.addNewSimulationContext("BioNetGen app", SimulationContext.Application.NETWORK_DETERMINISTIC);
                        List<SimulationContext> appList = new ArrayList<SimulationContext>();
                        appList.add(ruleBasedSimContext);
                        appList.add(odeSimContext);
                        // set convention for initial conditions in generated application for seed species (concentration or count)
                        ruleBasedSimContext.setUsingConcentration(bngUnitSystem.isConcentration());
                        odeSimContext.setUsingConcentration(bngUnitSystem.isConcentration());
                        RbmModelContainer rbmModelContainer = bioModel.getModel().getRbmModelContainer();
                        RbmUtils.reactionRuleLabelIndex = 0;
                        RbmUtils.reactionRuleNames.clear();
                        Reader reader = externalDocInfo.getReader();
                        ASTModel astModel = RbmUtils.importBnglFile(reader);
                        if (bioModel.getModel() != null && bioModel.getModel().getVcMetaData() != null) {
                            VCMetaData vcMetaData = bioModel.getModel().getVcMetaData();
                            vcMetaData.setFreeTextAnnotation(bioModel, astModel.getProlog());
                        }
                        if (astModel.hasCompartments()) {
                            Structure struct = bioModel.getModel().getStructure(0);
                            if (struct != null) {
                                bioModel.getModel().removeStructure(struct);
                            }
                        }
                        BnglObjectConstructionVisitor constructionVisitor = null;
                        if (!astModel.hasMolecularDefinitions()) {
                            System.out.println("Molecular Definition Block missing. Extracting it from Species, Reactions, Obserbables.");
                            constructionVisitor = new BnglObjectConstructionVisitor(bioModel.getModel(), appList, bngUnitSystem, false);
                        } else {
                            constructionVisitor = new BnglObjectConstructionVisitor(bioModel.getModel(), appList, bngUnitSystem, true);
                        }
                        // we'll convert the kinetic parameters to BngUnitSystem inside the visit(ASTKineticsParameter...)
                        astModel.jjtAccept(constructionVisitor, rbmModelContainer);
                        // set the volume in the newly created application to BngUnitSystem.bnglModelVolume
                        // TODO: set the right values if we import compartments from the bngl file!
                        // if(!bngUnitSystem.isConcentration()) {
                        Expression sizeExpression = new Expression(bngUnitSystem.getVolume());
                        ruleBasedSimContext.getGeometryContext().getStructureMapping(0).getSizeParameter().setExpression(sizeExpression);
                        odeSimContext.getGeometryContext().getStructureMapping(0).getSizeParameter().setExpression(sizeExpression);
                        // }
                        // we remove the NFSim application if any seed species is clamped because NFSim doesn't know what to do with it
                        boolean bClamped = false;
                        for (SpeciesContextSpec scs : ruleBasedSimContext.getReactionContext().getSpeciesContextSpecs()) {
                            if (scs.isConstant()) {
                                bClamped = true;
                                break;
                            }
                        }
                        if (bClamped) {
                            bioModel.removeSimulationContext(ruleBasedSimContext);
                        }
                        // // TODO: DON'T delete this code
                        // // the code below is needed if we also want to create simulations, example for 1 rule based simulation
                        // // it is rule-based so it wont have to flatten, should be fast.
                        // MathMappingCallback callback = new MathMappingCallbackTaskAdapter(getClientTaskStatusSupport());
                        // NetworkGenerationRequirements networkGenerationRequirements = null; // network generation should not be executed.
                        // ruleBasedSimContext.refreshMathDescription(callback,networkGenerationRequirements);
                        // Simulation sim = ruleBasedSimContext.addNewSimulation(SimulationOwner.DEFAULT_SIM_NAME_PREFIX,callback,networkGenerationRequirements);
                        doc = bioModel;
                    }
                } else {
                    // is XML
                    try (TranslationLogger transLogger = new TranslationLogger(requester)) {
                        XMLSource xmlSource = externalDocInfo.createXMLSource();
                        org.jdom.Element rootElement = xmlSource.getXmlDoc().getRootElement();
                        String xmlType = rootElement.getName();
                        String modelXmlType = null;
                        if (xmlType.equals(XMLTags.VcmlRootNodeTag)) {
                            // For now, assuming that <vcml> element has only one child (biomodel, mathmodel or geometry).
                            // Will deal with multiple children of <vcml> Element when we get to model composition.
                            @SuppressWarnings("unchecked") List<Element> childElementList = rootElement.getChildren();
                            // assuming first child is the biomodel, mathmodel or geometry.
                            Element modelElement = childElementList.get(0);
                            modelXmlType = modelElement.getName();
                        }
                        if (xmlType.equals(XMLTags.BioModelTag) || (xmlType.equals(XMLTags.VcmlRootNodeTag) && modelXmlType.equals(XMLTags.BioModelTag))) {
                            doc = XmlHelper.XMLToBioModel(xmlSource);
                        } else if (xmlType.equals(XMLTags.MathModelTag) || (xmlType.equals(XMLTags.VcmlRootNodeTag) && modelXmlType.equals(XMLTags.MathModelTag))) {
                            doc = XmlHelper.XMLToMathModel(xmlSource);
                        } else if (xmlType.equals(XMLTags.GeometryTag) || (xmlType.equals(XMLTags.VcmlRootNodeTag) && modelXmlType.equals(XMLTags.GeometryTag))) {
                            doc = XmlHelper.XMLToGeometry(xmlSource);
                        } else if (xmlType.equals(XMLTags.SbmlRootNodeTag)) {
                            Namespace namespace = rootElement.getNamespace(XMLTags.SBML_SPATIAL_NS_PREFIX);
                            boolean bIsSpatial = (namespace == null) ? false : true;
                            doc = XmlHelper.importSBML(transLogger, xmlSource, bIsSpatial);
                        } else if (xmlType.equals(XMLTags.CellmlRootNodeTag)) {
                            if (requester instanceof BioModelWindowManager) {
                                doc = XmlHelper.importBioCellML(transLogger, xmlSource);
                            } else {
                                doc = XmlHelper.importMathCellML(transLogger, xmlSource);
                            }
                        } else if (xmlType.equals(MicroscopyXMLTags.FRAPStudyTag)) {
                            doc = VFrapXmlHelper.VFRAPToBioModel(hashTable, xmlSource, getDocumentManager(), requester);
                        } else if (xmlType.equals(XMLTags.SedMLTypeTag)) {
                            doc = XmlHelper.sedmlToBioModel(transLogger, externalDocInfo, (SedML) hashTable.get(SEDML_MODEL), (AbstractTask) hashTable.get(SEDML_TASK));
                        } else {
                            // unknown XML format
                            throw new RuntimeException("unsupported XML format, first element tag is <" + rootElement.getName() + ">");
                        }
                        if (externalDocInfo.getDefaultName() != null) {
                            doc.setName(externalDocInfo.getDefaultName());
                        }
                    }
                }
                if (doc == null) {
                    File f = externalDocInfo.getFile();
                    if (f != null) {
                        throw new RuntimeException("Unable to determine type of file " + f.getCanonicalPath());
                    }
                    throw new ProgrammingException();
                }
            }
            // create biopax objects using annotation
            if (doc instanceof BioModel) {
                BioModel bioModel = (BioModel) doc;
                try {
                    bioModel.getVCMetaData().createBioPaxObjects(bioModel);
                } catch (Exception e) {
                    e.printStackTrace();
                }
            }
            requester.prepareDocumentToLoad(doc, inNewWindow);
            hashTable.put("doc", doc);
        }
    };
    AsynchClientTask task2 = new AsynchClientTask("Showing document", AsynchClientTask.TASKTYPE_SWING_BLOCKING, false, false) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            try {
                Throwable exc = (Throwable) hashTable.get(ClientTaskDispatcher.TASK_ABORTED_BY_ERROR);
                if (exc == null) {
                    VCDocument doc = (VCDocument) hashTable.get("doc");
                    DocumentWindowManager windowManager = null;
                    if (inNewWindow) {
                        windowManager = createDocumentWindowManager(doc);
                        // request was to create a new top-level window with this doc
                        getMdiManager().createNewDocumentWindow(windowManager);
                    // if (windowManager instanceof BioModelWindowManager) {
                    // ((BioModelWindowManager)windowManager).preloadApps();
                    // }
                    } else {
                        // request was to replace the document in an existing window
                        windowManager = (DocumentWindowManager) requester;
                        getMdiManager().setCanonicalTitle(requester.getManagerID());
                        windowManager.resetDocument(doc);
                    }
                    hashTable.put(WIN_MGR_KEY, windowManager);
                }
            } finally {
                if (!inNewWindow) {
                    getMdiManager().unBlockWindow(requester.getManagerID());
                }
                bOpening = false;
            }
        }
    };
    AsynchClientTask task3 = new AsynchClientTask("Special Layout", AsynchClientTask.TASKTYPE_SWING_BLOCKING, false, false) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            // TODO Auto-generated method stub
            if (documentInfo instanceof ExternalDocInfo) {
                ExternalDocInfo externalDocInfo = (ExternalDocInfo) documentInfo;
                if (externalDocInfo.isBioModelsNet()) {
                    DocumentWindowManager windowManager = (DocumentWindowManager) hashTable.get(WIN_MGR_KEY);
                    if (windowManager instanceof BioModelWindowManager) {
                        ((BioModelWindowManager) windowManager).specialLayout();
                    }
                }
            }
        }
    };
    AsynchClientTask task4 = new AsynchClientTaskFunction(ClientRequestManager::setWindowFocus, "Set window focus", AsynchClientTask.TASKTYPE_SWING_BLOCKING, false, false);
    ClientTaskDispatcher.dispatch(requester.getComponent(), hashTable, new AsynchClientTask[] { task0, task1, task2, task3, task4 }, false);
}

Example 3 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class DatabaseWindowManager method openLatest.

/**
 * Insert the method's description here.
 * Creation date: (6/1/2004 9:49:06 PM)
 */
public void openLatest() {
    VCDocumentInfo latestDocumentInfo = null;
    if (getPanelSelection() != null) {
        VCDocumentInfo thisDocumentInfo = getPanelSelection();
        // 
        // Get the latest version of the documentInfo
        // 
        VCDocumentInfo[] documentVersionsList = null;
        try {
            documentVersionsList = getDocumentVersionDates(thisDocumentInfo);
        } catch (DataAccessException e) {
            PopupGenerator.showErrorDialog(this, "Error accessing document!");
        }
        // 
        if (documentVersionsList != null && documentVersionsList.length > 0) {
            latestDocumentInfo = documentVersionsList[documentVersionsList.length - 1];
            for (int i = 0; i < documentVersionsList.length; i++) {
                if (documentVersionsList[i].getVersion().getDate().after(latestDocumentInfo.getVersion().getDate())) {
                    latestDocumentInfo = documentVersionsList[i];
                }
            }
            if (thisDocumentInfo.getVersion().getDate().after(latestDocumentInfo.getVersion().getDate())) {
                latestDocumentInfo = thisDocumentInfo;
            }
        } else {
            latestDocumentInfo = thisDocumentInfo;
        }
    } else {
        PopupGenerator.showErrorDialog(this, "Error Opening Latest Document : no document currently selected.");
        return;
    }
    getRequestManager().openDocument(latestDocumentInfo, this, true);
}

Example 4 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class DatabaseWindowManager method compareAnotherModel.

/**
 * Comment
 */
public void compareAnotherModel() {
    // 
    if (getPanelSelection() == null) {
        PopupGenerator.showErrorDialog(this, "Error Comparing documents : First document not selected");
        return;
    }
    VCDocumentInfo thisDocumentInfo = getPanelSelection();
    // Choose the other documentInfo. Bring up the appropriate dbTreePanel depending on the type of thisDocumentInfo
    VCDocumentInfo otherDocumentInfo = null;
    try {
        otherDocumentInfo = selectDocument(thisDocumentInfo.getVCDocumentType(), this);
    } catch (Exception e) {
        if (!(e instanceof UserCancelException)) {
            e.printStackTrace();
            DialogUtils.showErrorDialog(this.getComponent(), "Error Comparing documents: " + e.getMessage());
        }
        return;
    }
    if (otherDocumentInfo == null) {
        // PopupGenerator.showErrorDialog(this, "Error Comparing documents : Second document is null ");
        return;
    }
    // Check if both document types are of the same kind. If not, throw an error.
    if (((thisDocumentInfo instanceof BioModelInfo) && !(otherDocumentInfo instanceof BioModelInfo)) || ((thisDocumentInfo instanceof MathModelInfo) && !(otherDocumentInfo instanceof MathModelInfo)) || ((thisDocumentInfo instanceof GeometryInfo) && !(otherDocumentInfo instanceof GeometryInfo))) {
        PopupGenerator.showErrorDialog(this, "Error Comparing documents : The two documents are not of the same type!");
        return;
    }
    // Now that we have both the document versions to be compared, do the comparison and display the result
    compareWithOther(otherDocumentInfo, thisDocumentInfo);
}

Example 5 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class TestingFrameworkWindowManager method queryTCritCrossRef.

@SuppressWarnings("serial")
public void queryTCritCrossRef(final TestSuiteInfoNew tsin, final TestCriteriaNew tcrit, final String varName) {
    try {
        QueryTestCriteriaCrossRefOP queryTestCriteriaCrossRefOP = new QueryTestCriteriaCrossRefOP(tsin.getTSKey(), tcrit.getTCritKey(), varName);
        TestCriteriaCrossRefOPResults testCriteriaCrossRefOPResults = (TestCriteriaCrossRefOPResults) getRequestManager().getDocumentManager().doTestSuiteOP(queryTestCriteriaCrossRefOP);
        final Vector<TestCriteriaCrossRefOPResults.CrossRefData> xrefDataV = testCriteriaCrossRefOPResults.getCrossRefData();
        final TestSuiteInfoNew[] testSuiteInfos = getRequestManager().getDocumentManager().getTestSuiteInfos();
        Vector<TestSuiteInfoNew> missingTestSuites = new Vector<TestSuiteInfoNew>();
        for (int i = 0; i < testSuiteInfos.length; i++) {
            boolean bFound = false;
            for (int j = 0; j < xrefDataV.size(); j++) {
                if (xrefDataV.elementAt(j).tsVersion.equals(testSuiteInfos[i].getTSID())) {
                    bFound = true;
                    break;
                }
            }
            if (!bFound) {
                missingTestSuites.add(testSuiteInfos[i]);
            }
        }
        TestCriteriaCrossRefOPResults.CrossRefData xrefDataSource = null;
        for (int i = 0; i < xrefDataV.size(); i++) {
            if (xrefDataV.elementAt(i).tcritKey.equals(tcrit.getTCritKey())) {
                xrefDataSource = xrefDataV.elementAt(i);
                break;
            }
        }
        if (xrefDataSource == null) {
            throw new RuntimeException("Couldn't find source Test Criteria in query results.");
        }
        final int numColumns = 8;
        final int XREFDATA_ALLOWANCE = 1;
        final int TSKEY_ALLOWANCE = 1;
        final int XREFDATA_OFFSET = numColumns;
        final int TSDATE_OFFSET = 1;
        final int VARNAME_OFFSET = 3;
        final int TSKEYMISSING_OFFSET = numColumns + 1;
        final String[] colNames = new String[numColumns];
        final Object[][] sourceRows = new Object[xrefDataV.size() + missingTestSuites.size()][numColumns + XREFDATA_ALLOWANCE + TSKEY_ALLOWANCE];
        String sourceTestSuite = null;
        colNames[0] = "tsVersion";
        colNames[1] = "tsDate";
        colNames[2] = "tsBaseVersion";
        colNames[3] = "varName";
        colNames[4] = "RelErorr";
        colNames[5] = "limitRelErorr";
        colNames[6] = "limitAbsErorr";
        colNames[7] = "AbsErorr";
        for (int i = 0; i < xrefDataV.size(); i++) {
            sourceRows[i][colNames.length] = xrefDataV.elementAt(i);
            if (xrefDataV.elementAt(i).tcritKey.equals(queryTestCriteriaCrossRefOP.getTestCriterium())) {
                sourceTestSuite = xrefDataV.elementAt(i).tsVersion;
            }
            sourceRows[i][0] = xrefDataV.elementAt(i).tsVersion;
            sourceRows[i][2] = (xrefDataV.elementAt(i).tsRefVersion == null ? (xrefDataV.elementAt(i).regressionModelID == null ? /* && xrefDataV.elementAt(i).regressionMMref==null*/
            "" : "Ref Model exist BUT outside of TestSuites") : xrefDataV.elementAt(i).tsRefVersion);
            sourceRows[i][6] = xrefDataV.elementAt(i).maxAbsErorr;
            sourceRows[i][5] = xrefDataV.elementAt(i).maxRelErorr;
            if (xrefDataV.elementAt(i).varName != null) {
                sourceRows[i][VARNAME_OFFSET] = xrefDataV.elementAt(i).varName;
                sourceRows[i][4] = xrefDataV.elementAt(i).varCompSummary.getRelativeError();
                sourceRows[i][7] = xrefDataV.elementAt(i).varCompSummary.getAbsoluteError();
            } else {
                sourceRows[i][VARNAME_OFFSET] = "-No Report-";
                // "No Report";
                sourceRows[i][4] = null;
                // "No Report";
                sourceRows[i][7] = null;
            }
            for (int j = 0; j < testSuiteInfos.length; j++) {
                if (xrefDataV.elementAt(i).tsVersion.equals(testSuiteInfos[j].getTSID())) {
                    sourceRows[i][1] = testSuiteInfos[j].getTSDate();
                    break;
                }
            }
        }
        for (int i = xrefDataV.size(); i < sourceRows.length; i++) {
            sourceRows[i][0] = missingTestSuites.elementAt(i - xrefDataV.size()).getTSID();
            sourceRows[i][TSDATE_OFFSET] = missingTestSuites.elementAt(i - xrefDataV.size()).getTSDate();
            sourceRows[i][TSKEYMISSING_OFFSET] = missingTestSuites.elementAt(i - xrefDataV.size()).getTSKey();
        }
        // Arrays.sort(rows,
        // new Comparator<Object[]>(){
        // public int compare(Object[] o1, Object[] o2) {
        // return ((String)o1[0]).compareToIgnoreCase((String)o2[0]);
        // //						if(o1[0].equals(o2[0])){
        // //							return o1[3].compareToIgnoreCase(o2[3]);
        // //						}
        // //						return o1[0].compareToIgnoreCase(o2[0]);
        // }
        // }
        // );
        final VCellSortTableModel<Object[]> tableModel = new VCellSortTableModel<Object[]>(colNames) {

            public Class<?> getColumnClass(int columnIndex) {
                if (columnIndex == TSDATE_OFFSET) {
                    return Date.class;
                } else if (columnIndex >= 4 && columnIndex <= 7) {
                    return Double.class;
                }
                return String.class;
            }

            public boolean isCellEditable(int row, int column) {
                return false;
            }

            public Object getValueAt(int rowIndex, int columnIndex) {
                return getValueAt(rowIndex)[columnIndex];
            }

            public Comparator<Object[]> getComparator(final int col, final boolean ascending) {
                return new Comparator<Object[]>() {

                    public int compare(Object[] o1, Object[] o2) {
                        if (o1[col] == null && o2[col] == null) {
                            return 0;
                        }
                        // if(ascending){
                        if (o1[col] == null) {
                            return 1;
                        }
                        if (o2[col] == null) {
                            return -1;
                        }
                        // }
                        if (getColumnClass(col).equals(String.class)) {
                            if (ascending) {
                                return ((String) o1[col]).compareToIgnoreCase(((String) o2[col]));
                            } else {
                                return ((String) o2[col]).compareToIgnoreCase(((String) o1[col]));
                            }
                        } else if (getColumnClass(col).equals(Date.class)) {
                            if (ascending) {
                                return ((Date) o1[col]).compareTo(((Date) o2[col]));
                            }
                            return ((Date) o2[col]).compareTo(((Date) o1[col]));
                        } else if (getColumnClass(col).equals(Double.class)) {
                            if (ascending) {
                                return ((Double) o1[col]).compareTo(((Double) o2[col]));
                            }
                            return ((Double) o2[col]).compareTo(((Double) o1[col]));
                        }
                        throw new RuntimeException("TestSuite XRef Query unexpecte column class " + getColumnClass(col).getName());
                    }
                };
            }
        };
        tableModel.setData(Arrays.asList(sourceRows));
        // Create table
        final JSortTable table = new JSortTable();
        table.setModel(tableModel);
        table.setSelectionMode(ListSelectionModel.MULTIPLE_INTERVAL_SELECTION);
        final JScrollPane scrollPaneContentPane = new JScrollPane(table);
        table.setPreferredScrollableViewportSize(new Dimension(500, 250));
        table.getColumnModel().getColumn(TSDATE_OFFSET).setCellRenderer(new DefaultTableCellRenderer() {

            // DateFormat formatter = DateFormat.getDateTimeInstance();
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                return super.getTableCellRendererComponent(table, (value == null ? null : ((Date) value).toString()), /*formatter.format((Date)value)*/
                isSelected, hasFocus, row, column);
            }
        });
        DefaultTableCellRenderer dtcr = new DefaultTableCellRenderer() {

            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                return super.getTableCellRendererComponent(table, (value == null ? null : ((Double) value).toString()), /*formatter.format((Date)value)*/
                isSelected, hasFocus, row, column);
            }
        };
        table.getColumnModel().getColumn(4).setCellRenderer(dtcr);
        table.getColumnModel().getColumn(5).setCellRenderer(dtcr);
        table.getColumnModel().getColumn(6).setCellRenderer(dtcr);
        table.getColumnModel().getColumn(7).setCellRenderer(dtcr);
        // table.getColumnModel().getColumn(4).setCellRenderer(
        // new DefaultTableCellRenderer(){
        // public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
        // return super.getTableCellRendererComponent(table,(value == null?null:((Double)value).toString())/*formatter.format((Date)value)*/, isSelected, hasFocus, row, column);
        // }
        // }
        // );
        // table.getTableHeader().setReorderingAllowed(false);
        // Popup Menu
        final TestCriteriaCrossRefOPResults.CrossRefData xrefDataSourceFinal = xrefDataSource;
        final JPopupMenu queryPopupMenu = new JPopupMenu();
        final JMenuItem changeLimitsMenuItem = new JMenuItem("Change Selected Error Limits...");
        final String OPEN_MODEL = "Open Model(s)";
        final JMenuItem openModelMenuItem = new JMenuItem(OPEN_MODEL);
        final String OPEN_REGRREFMODEL = "Open Regr Ref Model(s)";
        final JMenuItem openRegrRefModelMenuItem = new JMenuItem(OPEN_REGRREFMODEL);
        final String SELECT_REF_IN_TREE = "Select in Tree View";
        final JMenuItem showInTreeMenuItem = new JMenuItem(SELECT_REF_IN_TREE);
        final String SELECT_REGR_REF_IN_TREE = "Select RegrRef TCase in Tree View";
        final JMenuItem showRegrRefInTreeMenuItem = new JMenuItem(SELECT_REGR_REF_IN_TREE);
        queryPopupMenu.add(changeLimitsMenuItem);
        queryPopupMenu.add(openModelMenuItem);
        queryPopupMenu.add(openRegrRefModelMenuItem);
        queryPopupMenu.add(showInTreeMenuItem);
        queryPopupMenu.add(showRegrRefInTreeMenuItem);
        ActionListener showInTreeActionListener = new ActionListener() {

            public void actionPerformed(ActionEvent actionEvent) {
                int[] selectedRows = table.getSelectedRows();
                if (selectedRows == null || selectedRows.length != 1) {
                    PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "Action " + actionEvent.getActionCommand() + " accepts only single selection!");
                    return;
                }
                TestCriteriaCrossRefOPResults.CrossRefData xrefData = (TestCriteriaCrossRefOPResults.CrossRefData) tableModel.getValueAt(selectedRows[0], XREFDATA_OFFSET);
                BigDecimal missingTSKey = (BigDecimal) tableModel.getValueAt(selectedRows[0], TSKEYMISSING_OFFSET);
                if (actionEvent.getActionCommand().equals(SELECT_REF_IN_TREE)) {
                    getTestingFrameworkWindowPanel().selectInTreeView((xrefData != null ? xrefData.tsKey : missingTSKey), (xrefData != null ? xrefData.tcaseKey : null), (xrefData != null ? xrefData.tcritKey : null));
                } else if (actionEvent.getActionCommand().equals(SELECT_REGR_REF_IN_TREE)) {
                    if (xrefData == null) {
                        PopupGenerator.showErrorDialog(getComponent(), "No Regression Reference info available.");
                        return;
                    }
                    getTestingFrameworkWindowPanel().selectInTreeView((xrefData != null ? xrefData.regressionModelTSuiteID : null), (xrefData != null ? xrefData.regressionModelTCaseID : null), (xrefData != null ? xrefData.regressionModelTCritID : null));
                }
                ChildWindow childWindow = TFWFinder.findChildWindowManager(getComponent()).getChildWindowFromContentPane(scrollPaneContentPane);
                if (childWindow != null) {
                    childWindow.show();
                }
            }
        };
        showInTreeMenuItem.addActionListener(showInTreeActionListener);
        showRegrRefInTreeMenuItem.addActionListener(showInTreeActionListener);
        ActionListener openModelsActionListener = new ActionListener() {

            public void actionPerformed(ActionEvent actionEvent) {
                int[] selectedRows = table.getSelectedRows();
                String failureS = "";
                TestCriteriaCrossRefOPResults.CrossRefData xrefData = null;
                int openCount = 0;
                for (int i = 0; i < selectedRows.length; i++) {
                    try {
                        xrefData = (TestCriteriaCrossRefOPResults.CrossRefData) tableModel.getValueAt(selectedRows[i], XREFDATA_OFFSET);
                        if (xrefData != null && (actionEvent.getActionCommand().equals(OPEN_REGRREFMODEL) ? xrefData.regressionModelID != null : true)) {
                            openCount += 1;
                            VCDocumentInfo vcDocInfo = null;
                            if (xrefData.isBioModel) {
                                vcDocInfo = getRequestManager().getDocumentManager().getBioModelInfo(new KeyValue((actionEvent.getActionCommand().equals(OPEN_REGRREFMODEL) ? xrefData.regressionModelID : xrefData.modelID)));
                            } else {
                                vcDocInfo = getRequestManager().getDocumentManager().getMathModelInfo(new KeyValue((actionEvent.getActionCommand().equals(OPEN_REGRREFMODEL) ? xrefData.regressionModelID : xrefData.modelID)));
                            }
                            getRequestManager().openDocument(vcDocInfo, TestingFrameworkWindowManager.this, true);
                        }
                    } catch (Exception e) {
                        failureS += failureS + "key=" + xrefData.modelID + " " + e.getMessage() + "\n";
                        e.printStackTrace();
                    }
                }
                if (failureS.length() > 0 || openCount == 0) {
                    PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "Failed to open some models\n" + failureS + (openCount == 0 ? "Selection(s) had no model(s)" : ""));
                }
                ChildWindow childWindow = TFWFinder.findChildWindowManager(getComponent()).getChildWindowFromContentPane(scrollPaneContentPane);
                if (childWindow != null) {
                    childWindow.show();
                }
            }
        };
        openModelMenuItem.addActionListener(openModelsActionListener);
        openRegrRefModelMenuItem.addActionListener(openModelsActionListener);
        changeLimitsMenuItem.addActionListener(new ActionListener() {

            public void actionPerformed(ActionEvent actionEvent) {
                int[] selectedRows = table.getSelectedRows();
                Vector<TestCriteriaCrossRefOPResults.CrossRefData> changeTCritV = new Vector<TestCriteriaCrossRefOPResults.CrossRefData>();
                for (int i = 0; i < selectedRows.length; i++) {
                    TestCriteriaCrossRefOPResults.CrossRefData xrefData = (TestCriteriaCrossRefOPResults.CrossRefData) tableModel.getValueAt(selectedRows[i], XREFDATA_OFFSET);
                    if (xrefData != null) {
                        boolean bFound = false;
                        for (int j = 0; j < changeTCritV.size(); j++) {
                            if (changeTCritV.elementAt(j).tcritKey.equals(xrefData.tcritKey)) {
                                bFound = true;
                                break;
                            }
                        }
                        if (!bFound) {
                            changeTCritV.add(xrefData);
                        }
                    }
                }
                if (changeTCritV.size() > 0) {
                    Double relativeErrorLimit = null;
                    Double absoluteErrorLimit = null;
                    while (true) {
                        try {
                            String ret = PopupGenerator.showInputDialog(getComponent(), "Enter new TestCriteria Error Limits for '" + xrefDataSourceFinal.simName + "'.  '-'(dash) to keep original value.", "RelativeErrorLimit,AbsoluteErrorLimit");
                            int commaPosition = ret.indexOf(',');
                            if (commaPosition == -1) {
                                throw new Exception("No comma found separating RelativeErrorLimit AbsoluteErrorLimit");
                            }
                            if (commaPosition != ret.lastIndexOf(',')) {
                                throw new Exception("Only 1 comma allowed separating RelativeErrorLimit and AbsoluteErrorLimit");
                            }
                            final String KEEP_ORIGINAL_VALUE = "-";
                            String relativeErrorS = ret.substring(0, commaPosition);
                            String absoluteErrorS = ret.substring(commaPosition + 1, ret.length());
                            if (!relativeErrorS.equals(KEEP_ORIGINAL_VALUE)) {
                                relativeErrorLimit = Double.parseDouble(relativeErrorS);
                            }
                            if (!absoluteErrorS.equals(KEEP_ORIGINAL_VALUE)) {
                                absoluteErrorLimit = Double.parseDouble(absoluteErrorS);
                            }
                            if ((relativeErrorLimit != null && relativeErrorLimit <= 0) || (absoluteErrorLimit != null && absoluteErrorLimit <= 0)) {
                                throw new Exception("Error limits must be greater than 0");
                            }
                            break;
                        } catch (UserCancelException e) {
                            ChildWindow childWindow = TFWFinder.findChildWindowManager(getComponent()).getChildWindowFromContentPane(scrollPaneContentPane);
                            if (childWindow != null) {
                                childWindow.show();
                            }
                            return;
                        } catch (Exception e) {
                            PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "Error parsing Error Limits\n" + e.getMessage());
                        }
                    }
                    double[] relErrorLimitArr = new double[changeTCritV.size()];
                    double[] absErrorLimitArr = new double[changeTCritV.size()];
                    Object[][] rows = new Object[changeTCritV.size()][5];
                    for (int j = 0; j < changeTCritV.size(); j++) {
                        relErrorLimitArr[j] = (relativeErrorLimit != null ? relativeErrorLimit.doubleValue() : changeTCritV.elementAt(j).maxRelErorr);
                        absErrorLimitArr[j] = (absoluteErrorLimit != null ? absoluteErrorLimit.doubleValue() : changeTCritV.elementAt(j).maxAbsErorr);
                        rows[j][2] = new Double(relErrorLimitArr[j]);
                        rows[j][4] = new Double(absErrorLimitArr[j]);
                        rows[j][1] = new Double(changeTCritV.elementAt(j).maxRelErorr);
                        rows[j][3] = new Double(changeTCritV.elementAt(j).maxAbsErorr);
                        rows[j][0] = changeTCritV.elementAt(j).tsVersion;
                    }
                    try {
                        PopupGenerator.showComponentOKCancelTableList(getComponent(), "Confirm Error Limit Changes", new String[] { "TSVersion", "Orig RelErrorLimit", "New RelErrorLimit", "Orig AbsErrorLimit", "New AbsErrorLimit" }, rows, null);
                    } catch (UserCancelException e) {
                        ChildWindow childWindow = TFWFinder.findChildWindowManager(getComponent()).getChildWindowFromContentPane(scrollPaneContentPane);
                        if (childWindow != null) {
                            childWindow.show();
                        }
                        return;
                    }
                    // Get information needed to generate new TestCriteria Reports
                    final String YES_ANSWER = "Yes";
                    Hashtable<TestSuiteInfoNew, Vector<TestCriteriaCrossRefOPResults.CrossRefData>> genReportHash = null;
                    String genRepResult = PopupGenerator.showWarningDialog(getComponent(), "Generate Reports for changed Test Criterias?", new String[] { YES_ANSWER, "No" }, YES_ANSWER);
                    if (genRepResult != null && genRepResult.equals(YES_ANSWER)) {
                        genReportHash = new Hashtable<TestSuiteInfoNew, Vector<TestCriteriaCrossRefOPResults.CrossRefData>>();
                        for (int i = 0; i < changeTCritV.size(); i++) {
                            boolean bFound = false;
                            for (int j = 0; j < testSuiteInfos.length; j++) {
                                if (changeTCritV.elementAt(i).tsVersion.equals(testSuiteInfos[j].getTSID())) {
                                    bFound = true;
                                    Vector<TestCriteriaCrossRefOPResults.CrossRefData> tempV = genReportHash.get(testSuiteInfos[j]);
                                    if (tempV == null) {
                                        tempV = new Vector<TestCriteriaCrossRefOPResults.CrossRefData>();
                                        genReportHash.put(testSuiteInfos[j], tempV);
                                    }
                                    tempV.add(changeTCritV.elementAt(i));
                                }
                            }
                            if (!bFound) {
                                PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "Couldn't find testsuiteinfo for testcriteria");
                                return;
                            }
                        }
                    }
                    BigDecimal[] changeTCritBDArr = new BigDecimal[changeTCritV.size()];
                    for (int i = 0; i < changeTCritV.size(); i++) {
                        changeTCritBDArr[i] = changeTCritV.elementAt(i).tcritKey;
                    }
                    ChangeTestCriteriaErrorLimitOP changeTestCriteriaErrorLimitOP = new ChangeTestCriteriaErrorLimitOP(changeTCritBDArr, absErrorLimitArr, relErrorLimitArr);
                    try {
                        getTestingFrameworkWindowPanel().getDocumentManager().doTestSuiteOP(changeTestCriteriaErrorLimitOP);
                    } catch (Exception e) {
                        PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "Failed Changing Error limits for selected " + xrefDataSourceFinal.simName + "\n" + e.getMessage());
                        return;
                    }
                    ChildWindow childWindow = TFWFinder.findChildWindowManager(getComponent()).getChildWindowFromContentPane(scrollPaneContentPane);
                    if (childWindow != null) {
                        childWindow.close();
                    }
                    getTestingFrameworkWindowPanel().refreshTree((TestSuiteInfoNew) null);
                    if (genReportHash != null) {
                        updateReports(genReportHash);
                    } else {
                        new Thread(new Runnable() {

                            public void run() {
                                TestingFrameworkWindowManager.this.queryTCritCrossRef(tsin, tcrit, varName);
                            }
                        }).start();
                    }
                } else {
                    PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "No selected rows contain Test Criteria.");
                }
            }
        });
        table.addMouseListener(new MouseAdapter() {

            @Override
            public void mouseClicked(MouseEvent e) {
                super.mouseClicked(e);
                checkPopup(e);
            }

            @Override
            public void mousePressed(MouseEvent e) {
                super.mousePressed(e);
                checkPopup(e);
            }

            @Override
            public void mouseReleased(MouseEvent e) {
                super.mouseReleased(e);
                checkPopup(e);
            }

            private void checkPopup(MouseEvent mouseEvent) {
                if (mouseEvent.isPopupTrigger()) {
                    // Not use because popupmenu will not show at edge
                    // if(table.getSelectedRowCount() <= 1){
                    // table.getSelectionModel().setSelectionInterval(table.rowAtPoint(mouseEvent.getPoint()),table.rowAtPoint(mouseEvent.getPoint()));
                    // }
                    doPopup(mouseEvent);
                } else {
                    queryPopupMenu.setVisible(false);
                }
            }

            private void doPopup(MouseEvent mouseEvent) {
                // queryPopupMenu.add(showInTreeMenuItem);
                if (table.getSelectedRowCount() == 0) {
                    changeLimitsMenuItem.setEnabled(false);
                    openModelMenuItem.setEnabled(false);
                    openRegrRefModelMenuItem.setEnabled(false);
                    showInTreeMenuItem.setEnabled(false);
                    showRegrRefInTreeMenuItem.setEnabled(false);
                } else {
                    changeLimitsMenuItem.setEnabled(true);
                    openModelMenuItem.setEnabled(true);
                    openRegrRefModelMenuItem.setEnabled(true);
                    showInTreeMenuItem.setEnabled(true);
                    if (table.getSelectedRowCount() == 1) {
                        TestCriteriaCrossRefOPResults.CrossRefData xrefData = (TestCriteriaCrossRefOPResults.CrossRefData) tableModel.getValueAt(table.getSelectedRow(), numColumns);
                        showRegrRefInTreeMenuItem.setEnabled(xrefData != null && xrefData.regressionModelID != null && xrefData.tsRefVersion != null);
                    }
                }
                queryPopupMenu.show(mouseEvent.getComponent(), mouseEvent.getPoint().x, mouseEvent.getPoint().y);
            }
        });
        String title = (xrefDataSource.isBioModel ? "BM" : "MM") + " " + xrefDataSource.tcSolutionType + " (" + sourceTestSuite + ") " + " \"" + (xrefDataSource.isBioModel ? xrefDataSource.bmName : xrefDataSource.mmName) + "\"  ::  " + (xrefDataSource.isBioModel ? "app=\"" + xrefDataSource.bmAppName + "\"  ::  sim=\"" + xrefDataSource.simName + "\"" : "sim=\"" + xrefDataSource.simName + "\"");
        ChildWindow childWindow = TFWFinder.findChildWindowManager(getComponent()).addChildWindow(scrollPaneContentPane, scrollPaneContentPane, title);
        // childWindow.setSize(600,400);
        childWindow.setIsCenteredOnParent();
        childWindow.pack();
        childWindow.setResizable(true);
        childWindow.show();
    } catch (DataAccessException e) {
        e.printStackTrace();
        PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "Error Query TestCriteria Cross Ref:\n" + e.getMessage());
    }
}