Examples with VCDocumentInfo org.vcell.util.document.VCDocumentInfo used on opensource projects

Example 11 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class DatabaseWindowPanel method setSelectedDocumentInfo.

/**
 * Sets the selectedDocumentInfo property (cbit.vcell.document.VCDocumentInfo) value.
 * @param selectedDocumentInfo The new value for the property.
 * @see #getSelectedDocumentInfo
 */
private void setSelectedDocumentInfo(VCDocumentInfo selectedDocumentInfo) {
    VCDocumentInfo oldValue = fieldSelectedDocumentInfo;
    fieldSelectedDocumentInfo = selectedDocumentInfo;
    firePropertyChange(PROPERTY_NAME_SELECTED_DOCUMENT_INFO, oldValue, selectedDocumentInfo);
    if (fieldSelectedDocumentInfo == null) {
        setSelectedObjects(new Object[] {});
    } else {
        setSelectedObjects(new Object[] { fieldSelectedDocumentInfo });
    }
}

Example 12 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class TestingFrameworkWindowPanel method testingFrameworkPanel_actionPerformed.

/**
 * Comment
 */
private void testingFrameworkPanel_actionPerformed(final ActionEvent e) {
    if (tfRefreshTreeTask == null) {
        tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager());
    }
    Hashtable<String, Object> hash = new Hashtable<String, Object>();
    Vector<AsynchClientTask> tasksV = new Vector<AsynchClientTask>();
    try {
        final TreePath[] selectedTreePaths = gettestingFrameworkPanel().getSelectedTreePaths();
        if (selectedTreePaths != null && selectedTreePaths.length > 1) {
            Object refObj = ((BioModelNode) selectedTreePaths[0].getLastPathComponent()).getUserObject();
            for (int i = 1; i < selectedTreePaths.length; i++) {
                Object currentObj = ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
                if ((refObj == null && currentObj == null) || ((refObj != null && currentObj != null) && (refObj.getClass().equals(currentObj.getClass()))) || (refObj instanceof TestCaseNew && currentObj instanceof TestCaseNew)) {
                    continue;
                } else {
                    throw new IllegalArgumentException("Multiple selections must all be of same type");
                }
            }
        }
        final Object selectedObj = gettestingFrameworkPanel().getTreeSelection();
        if (e.getActionCommand().equals(TestingFrameworkPanel.DELETE_XML_LOAD_TEST)) {
            int result = DialogUtils.showComponentOKCancelDialog(this, new JLabel("Delete " + selectedTreePaths.length + " Load Tests?"), "Confirm Load Test Delete");
            if (result != JOptionPane.OK_OPTION) {
                return;
            }
            AsynchClientTask deleteLoadTestTask = new AsynchClientTask("Deleting Load Test...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

                @Override
                public void run(Hashtable<String, Object> hashTable) throws Exception {
                    LoadTestInfoOP deleteLoadTestInfoOP = new LoadTestInfoOP(LoadTestOpFlag.delete, null, null);
                    LoadTestSoftwareVersionTimeStamp[] deleteTheseversTimestamps = new LoadTestSoftwareVersionTimeStamp[selectedTreePaths.length];
                    for (int i = 0; i < selectedTreePaths.length; i++) {
                        deleteTheseversTimestamps[i] = ((LoadTestTreeInfo) ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject()).loadTestSoftwareVersionTimeStamp;
                    }
                    deleteLoadTestInfoOP.setDeleteInfo(deleteTheseversTimestamps);
                    getTestingFrameworkWindowManager().getRequestManager().getDocumentManager().doTestSuiteOP(deleteLoadTestInfoOP);
                    final ActionEvent refreshAction = new ActionEvent(this, 0, TestingFrameworkPanel.REFRESH_XML_LOAD_TEST);
                    new Thread(new Runnable() {

                        public void run() {
                            testingFrameworkPanel_actionPerformed(refreshAction);
                        }
                    }).start();
                }
            };
            tasksV.add(deleteLoadTestTask);
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_All) || e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_MODELS) || e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_USERS)) {
            final Date[] beginDate = new Date[1];
            final Date[] endDate = new Date[1];
            final TreeSet<String> uniqueUserIDTreeSet = new TreeSet<String>();
            final Vector<KeyValue> bioAndMathModelKeyValueV = new Vector<KeyValue>();
            String typeMsg = "All";
            if (!e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_All)) {
                if (selectedTreePaths != null && selectedTreePaths.length > 0) {
                    Object refObj = ((BioModelNode) selectedTreePaths[0].getLastPathComponent()).getUserObject();
                    if (refObj instanceof TestingFrmwkTreeModel.LoadTestTreeInfo) {
                        for (int i = 0; i < selectedTreePaths.length; i++) {
                            refObj = ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
                            uniqueUserIDTreeSet.add(((TestingFrmwkTreeModel.LoadTestTreeInfo) refObj).userid);
                            if (!e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_USERS)) {
                                bioAndMathModelKeyValueV.add(((TestingFrmwkTreeModel.LoadTestTreeInfo) refObj).bioOrMathModelKey);
                            }
                        }
                    }
                }
            } else {
                // TreeSet<VCDocumentInfo> dateRangeDocInfoTreeSet =
                // new TreeSet<VCDocumentInfo>(new Comparator<VCDocumentInfo>() {
                // public int compare(VCDocumentInfo o1, VCDocumentInfo o2) {
                // return o1.getVersion().getDate().compareTo(o2.getVersion().getDate());
                // }
                // });
                // BioModelInfo[] allBioModelInfos = getDocumentManager().getBioModelInfos();
                // dateRangeDocInfoTreeSet.addAll(Arrays.asList(allBioModelInfos));
                // MathModelInfo[] allMathModelInfos = getDocumentManager().getMathModelInfos();
                // dateRangeDocInfoTreeSet.addAll(Arrays.asList(allMathModelInfos));
                SimpleDateFormat simpleDateFormat = new SimpleDateFormat("yyyy-MM-dd");
                // Date firstDate = simpleDateFormat.parse(simpleDateFormat.format(dateRangeDocInfoTreeSet.first().getVersion().getDate()));
                // Date lastDate = simpleDateFormat.parse(simpleDateFormat.format(dateRangeDocInfoTreeSet.last().getVersion().getDate()));
                Date firstDate = simpleDateFormat.parse("2000-01-01");
                Date lastDate = simpleDateFormat.parse(simpleDateFormat.format(Calendar.getInstance().getTime()));
                String allDateRangeString = simpleDateFormat.format(firstDate) + "," + simpleDateFormat.format(lastDate);
                while (beginDate[0] == null || endDate[0] == null) {
                    try {
                        String dateRangeString = DialogUtils.showInputDialog0(this, "Enter Date Range (begin,end) to include (e.g. '" + allDateRangeString + "')", allDateRangeString);
                        beginDate[0] = simpleDateFormat.parse(dateRangeString.substring(0, dateRangeString.indexOf(",")));
                        endDate[0] = simpleDateFormat.parse(dateRangeString.substring(dateRangeString.indexOf(",") + 1));
                    // if(beginDate.compareTo(firstDate) != 0 ||
                    // endDate.compareTo(lastDate) != 0){
                    // Iterator<VCDocumentInfo> vcDocIter = dateRangeDocInfoTreeSet.iterator();
                    // while(vcDocIter.hasNext()){
                    // VCDocumentInfo vcDocInfo = vcDocIter.next();
                    // Date docDate = simpleDateFormat.parse(simpleDateFormat.format(vcDocInfo.getVersion().getDate()));
                    // if(docDate.compareTo(beginDate) < 0 ||
                    // docDate.compareTo(endDate) > 0){
                    // continue;
                    // }
                    // uniqueUserIDTreeSet.add(vcDocInfo.getVersion().getOwner().getName());
                    // bioAndMathModelKeyValueV.add(vcDocInfo.getVersion().getVersionKey());
                    // }
                    // }
                    } catch (UtilCancelException uce) {
                        return;
                    } catch (Exception e2) {
                        DialogUtils.showErrorDialog(this, e2.getMessage());
                    }
                }
                if (beginDate[0].compareTo(firstDate) == 0 && endDate[0].compareTo(lastDate) == 0) {
                    beginDate[0] = null;
                    endDate[0] = null;
                } else {
                    typeMsg = "between " + simpleDateFormat.format(beginDate[0]) + "," + simpleDateFormat.format(endDate[0]);
                }
            }
            if (e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_MODELS)) {
                typeMsg = "Models (" + bioAndMathModelKeyValueV.size() + ")";
            } else if (e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_USERS)) {
                typeMsg = "Users (" + uniqueUserIDTreeSet.size() + ")";
            }
            int result = DialogUtils.showComponentOKCancelDialog(TestingFrameworkWindowPanel.this, new JLabel("Run " + typeMsg + " Load Tests?"), "Confirm Load Test Run");
            if (result != JOptionPane.OK_OPTION) {
                return;
            }
            result = DialogUtils.showComponentOKCancelDialog(this, enterDBAndSoftwareVersPanel, "Enter Software Version running load test");
            if (result != JOptionPane.OK_OPTION) {
                return;
            }
            AsynchClientTask runXMLLoadTestTask = new AsynchClientTask("Running XML Load Test...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

                @Override
                public void run(Hashtable<String, Object> hashTable) throws Exception {
                    String[] uniqueUserIDArr = null;
                    KeyValue[] bioAndMathModelKeyValueArr = null;
                    if (beginDate[0] != null && endDate[0] != null) {
                        LoadTestInfoOpResults loadTestInfoOpResults = getTestingFrameworkWindowManager().getLoadTestInfoBetweenDates(beginDate[0], endDate[0]);
                        uniqueUserIDArr = loadTestInfoOpResults.getUniqueUserIDsBetweenDates();
                        bioAndMathModelKeyValueArr = loadTestInfoOpResults.getKeyValuesBetweenDates();
                    } else {
                        uniqueUserIDArr = (uniqueUserIDTreeSet.size() == 0 ? null : uniqueUserIDTreeSet.toArray(new String[0]));
                        bioAndMathModelKeyValueArr = (bioAndMathModelKeyValueV.size() == 0 ? null : bioAndMathModelKeyValueV.toArray(new KeyValue[0]));
                    }
                    throw new RuntimeException(TestingFrameworkWindowPanel.class.getSimpleName() + ".runXMLLoadTestTask(): Run Load Test disabled, directly dependend on MathVerifier.runLoadTest(), should move to standalone admin tool.");
                // MathVerifier mathVerifier = MathVerifier.createMathVerifier(
                // enterDBAndSoftwareVersPanel.getDBHost(),
                // enterDBAndSoftwareVersPanel.getDBName(),
                // enterDBAndSoftwareVersPanel.getDBSchema(),
                // enterDBAndSoftwareVersPanel.getDBPassword());
                // mathVerifier.runLoadTest(
                // uniqueUserIDArr,
                // bioAndMathModelKeyValueArr,
                // enterDBAndSoftwareVersPanel.getSoftwareVersion(),
                // (enterDBAndSoftwareVersPanel.getSoftwareVersion().length()==0?false:true),
                // (enterDBAndSoftwareVersPanel.getSoftwareVersion().length()==0?Compare.DEFAULT_COMPARE_LOGGER:null));
                }
            };
            tasksV.add(runXMLLoadTestTask);
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.REFRESH_XML_LOAD_TEST)) /*||
				e.getActionCommand().equals(TestingFrameworkPanel.REFRESH_INCLUDE_SLOW_XML_LOAD_TEST)*/
        {
            final String LOADTESTDETAILS_KEY = "LOADTESTDETAILS_KEY";
            AsynchClientTask getFailedLoadTest = new AsynchClientTask("Getting FailedLoadTests...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

                @Override
                public void run(Hashtable<String, Object> hashTable) throws Exception {
                    /*						Integer slowLoadThreshold = null;
						if(e.getActionCommand().equals(TestingFrameworkPanel.REFRESH_INCLUDE_SLOW_XML_LOAD_TEST)){
							String result = DialogUtils.showInputDialog0(TestingFrameworkWindowPanel.this, "Enter load time threshold (millseconds)","10000");
							slowLoadThreshold = new Integer(result);
						}
*/
                    if (gettestingFrameworkPanel().getSlowLoadThreshold() != null && gettestingFrameworkPanel().getLoadTestSQLCondition() != null) {
                        throw new IllegalArgumentException("SlowLoadThreshold and 'SQL Condition' cannot both be non-null at the same time.");
                    }
                    hashTable.put(LOADTESTDETAILS_KEY, getTestingFrameworkWindowManager().getLoadTestDetails(gettestingFrameworkPanel().getSlowLoadThreshold(), gettestingFrameworkPanel().getLoadTestSQLCondition()));
                }
            };
            AsynchClientTask refreshFailedLoadTest = new AsynchClientTask("Refreshing FailedLoadTests...", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

                @Override
                public void run(Hashtable<String, Object> hashTable) throws Exception {
                    getTestingFrameworkWindowManager().refreshLoadTest((LoadTestInfoOpResults) hashTable.get(LOADTESTDETAILS_KEY));
                }
            };
            tasksV.add(getFailedLoadTest);
            tasksV.add(refreshFailedLoadTest);
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.QUERY_TCRITVAR_CROSSREF)) {
            if (selectedObj instanceof TestingFrmwkTreeModel.TestCriteriaVarUserObj && selectedTreePaths.length == 1) {
                final TestingFrmwkTreeModel.TestCriteriaVarUserObj tcritVaruserObj = (TestingFrmwkTreeModel.TestCriteriaVarUserObj) selectedObj;
                final TestSuiteInfoNew tsInfoNew = gettestingFrameworkPanel().getTestSuiteInfoOfTreePath(selectedTreePaths[0]);
                AsynchClientTask queryTCritCrossRef = new AsynchClientTask("Query TCrit Var Cross Ref", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

                    public void run(Hashtable<String, Object> hashTable) throws Exception {
                        getTestingFrameworkWindowManager().queryTCritCrossRef(tsInfoNew, tcritVaruserObj.getTestCriteria(), tcritVaruserObj.getVariableComparisonSummary().getName());
                    }
                };
                tasksV.add(queryTCritCrossRef);
            } else {
                throw new Exception("Selected Object is not a TestCriteria Variable! Failed to Query Var Cross Ref.");
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.QUERY_TCRIT_CROSSREF)) {
            if (selectedObj instanceof TestCriteriaNew) {
                final TestCriteriaNew tcritNew = (TestCriteriaNew) selectedObj;
                final TestSuiteInfoNew tsInfoNew = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCriteria();
                AsynchClientTask queryTCritCrossRef = new AsynchClientTask("Query TCrit Cross Ref", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

                    public void run(Hashtable<String, Object> hashTable) throws Exception {
                        getTestingFrameworkWindowManager().queryTCritCrossRef(tsInfoNew, tcritNew, null);
                    }
                };
                tasksV.add(queryTCritCrossRef);
            } else {
                throw new Exception("Selected Object is not a TestCriteria! Failed to Query Cross Ref.");
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.LOCK_TESTSUITE)) {
            if (selectedObj instanceof TestSuiteInfoNew) {
                final TestSuiteInfoNew tsInfoNew = (TestSuiteInfoNew) selectedObj;
                AsynchClientTask lockTestSuiteTask = new AsynchClientTask("Lock TestSuite", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

                    public void run(Hashtable<String, Object> hashTable) throws Exception {
                        getTestingFrameworkWindowManager().lockTestSuite(tsInfoNew);
                    }
                };
                tasksV.add(lockTestSuiteTask);
                tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfoNew);
                tasksV.add(tfRefreshTreeTask);
            } else {
                throw new Exception("Selected Object is not a TestSuite! Failed to Lock TestSuite.");
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.EDIT_ANNOT_TESTSUITE)) {
            if (selectedObj instanceof TestSuiteInfoNew) {
                final TestSuiteInfoNew tsInfoNew = (TestSuiteInfoNew) selectedObj;
                String newAnnotation;
                // initialize fields
                String oldAnnotation = tsInfoNew.getTSAnnotation();
                // show the editor
                newAnnotation = org.vcell.util.gui.DialogUtils.showAnnotationDialog(this, oldAnnotation);
                final String finalAnnotation = newAnnotation;
                AsynchClientTask editTestSuiteAnnotation = new AsynchClientTask("Edit TestSuite Annotation", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

                    public void run(Hashtable<String, Object> hashTable) throws Exception {
                        getTestingFrameworkWindowManager().updateTestSuiteAnnotation(tsInfoNew, finalAnnotation);
                    }
                };
                tasksV.add(editTestSuiteAnnotation);
                tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfoNew);
                tasksV.add(tfRefreshTreeTask);
            } else {
                throw new Exception("Selected Object is not a TestSuite! Failed to Edit TestSuite Annotation.");
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.EDIT_ANNOT_TESTCASE)) {
            if (selectedObj instanceof TestCaseNew) {
                final TestCaseNew tcNew = (TestCaseNew) selectedObj;
                String newAnnotation;
                // initialize fields
                String oldAnnotation = tcNew.getAnnotation();
                // show the editor
                newAnnotation = org.vcell.util.gui.DialogUtils.showAnnotationDialog(this, oldAnnotation);
                final String finalAnnotation = newAnnotation;
                AsynchClientTask editTestCaseAnnotation = new AsynchClientTask("Edit TestCase Annotation", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

                    public void run(Hashtable<String, Object> hashTable) throws Exception {
                        getTestingFrameworkWindowManager().updateTestCaseAnnotation(tcNew, finalAnnotation);
                    }
                };
                tasksV.add(editTestCaseAnnotation);
                TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCase();
                tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
                tasksV.add(tfRefreshTreeTask);
            } else {
                throw new Exception("Selected Object is not a TestCase! Failed to Edit TestCase Annotation.");
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.TOGGLE_STEADYSTATE)) {
            if (selectedObj instanceof TestCaseNew) {
                final TestCaseNew testCase = (TestCaseNew) selectedObj;
                String okString = "Ok";
                String confirm = PopupGenerator.showWarningDialog(this, "Toggle TestCase '" + testCase.getVersion().getName() + "'\nfrom " + testCase.getType() + " to " + (testCase.getType().equals(TestCaseNew.EXACT) ? TestCaseNew.EXACT_STEADY : TestCaseNew.EXACT), new String[] { okString, "Cancel" }, okString);
                if (confirm.equals(okString)) {
                    AsynchClientTask toggleSteadyState = new AsynchClientTask("Toggle Steady State", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

                        public void run(Hashtable<String, Object> hashTable) throws Exception {
                            getTestingFrameworkWindowManager().toggleTestCaseSteadyState(new TestCaseNew[] { testCase });
                        }
                    };
                    tasksV.add(toggleSteadyState);
                    TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCase();
                    tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
                    tasksV.add(tfRefreshTreeTask);
                } else {
                    throw UserCancelException.CANCEL_GENERIC;
                }
            } else {
                throw new Exception("Selected Object is not a TestCase! Cannot Toggle SteadyState");
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.ADD_TESTSUITE)) {
            TestingFrameworkWindowManager.NewTestSuiteUserInformation newTestSuiteUserInfo = getTestingFrameworkWindowManager().getNewTestSuiteInfoFromUser(null, null);
            tasksV.add(new TFAddTestSuite(getTestingFrameworkWindowManager(), newTestSuiteUserInfo.testSuiteInfoNew));
            tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), newTestSuiteUserInfo.testSuiteInfoNew);
            tasksV.add(tfRefreshTreeTask);
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.REFRESH_TESTSUITE)) {
            TestSuiteInfoNew tsin = null;
            if (selectedObj instanceof TestSuiteInfoNew) {
                tsin = (TestSuiteInfoNew) selectedObj;
            } else if (selectedObj instanceof TestCaseNew) {
                tsin = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCase();
            } else if (selectedObj instanceof TestCriteriaNew) {
                tsin = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCriteria();
            }
            if (tsin == null) {
                throw new IllegalArgumentException("Refresh error: Unexpected tree selection type=" + selectedObj.getClass().getName());
            }
            tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsin);
            tasksV.add(new TFUpdateRunningStatus(getTestingFrameworkWindowManager(), tsin));
            tasksV.add(tfRefreshTreeTask);
        // getTestingFrameworkWindowManager().updateSimRunningStatus();
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.ADD_TESTCASE)) {
            if (selectedObj instanceof TestSuiteInfoNew) {
                TestSuiteInfoNew tsInfo = (TestSuiteInfoNew) selectedObj;
                TestCaseNew[] tcnArr = getTestingFrameworkWindowManager().getNewTestCaseArr();
                tasksV.add(new cbit.vcell.client.task.TFAddTestCases(getTestingFrameworkWindowManager(), tsInfo, tcnArr));
                tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
                tasksV.add(tfRefreshTreeTask);
            } else {
                throw new Exception("Selected Object is not a test suite! Cannot add a test case");
            }
        } else if (e.getActionCommand().equals("Run All")) {
            if (selectedTreePaths == null || selectedTreePaths.length != 1) {
                throw new IllegalArgumentException("Command '" + e.getActionCommand() + "' Single Selection Only!");
            }
            if (selectedObj instanceof TestSuiteInfoNew) {
                TestSuiteInfoNew tsInfo = (TestSuiteInfoNew) selectedObj;
                String okString = "Ok";
                String confirm = PopupGenerator.showWarningDialog(this, "Run All Sims for TestSuite '" + tsInfo.getTSID() + "'?", new String[] { okString, "Cancel" }, okString);
                if (confirm.equals(okString)) {
                    tasksV.add(new TFRunSims(getTestingFrameworkWindowManager(), tsInfo));
                    tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
                    tasksV.add(tfRefreshTreeTask);
                }
            } else {
                throw new Exception("Selected Object is not a test suite!");
            }
        } else if (e.getActionCommand().equals("Run Simulations")) {
            if (selectedTreePaths == null || selectedTreePaths.length != 1) {
                throw new IllegalArgumentException("Command '" + e.getActionCommand() + "' Single Selection Only!");
            }
            if (selectedObj instanceof TestCaseNew) {
                TestCaseNew testCase = (TestCaseNew) selectedObj;
                String okString = "Ok";
                String confirm = PopupGenerator.showWarningDialog(this, "Run All Sims for TestCase '" + testCase.getVersion().getName() + "'?", new String[] { okString, "Cancel" }, okString);
                if (confirm.equals(okString)) {
                    tasksV.add(new TFRunSims(getTestingFrameworkWindowManager(), testCase));
                    TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCase();
                    tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
                    tasksV.add(tfRefreshTreeTask);
                }
            } else {
                throw new Exception("Selected Object is not a TestCase! Cannot run simulations");
            }
        } else if (e.getActionCommand().equals("Run")) {
            if (selectedTreePaths != null && selectedTreePaths.length > 0 && selectedTreePaths[0].getLastPathComponent() instanceof BioModelNode && ((BioModelNode) selectedTreePaths[0].getLastPathComponent()).getUserObject() instanceof TestCriteriaNew) {
                for (int i = 0; i < selectedTreePaths.length; i += 1) {
                    TestCriteriaNew tCriteria = (TestCriteriaNew) ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
                    tasksV.add(new TFRunSims(getTestingFrameworkWindowManager(), tCriteria));
                }
                TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCriteria();
                tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
                tasksV.add(tfRefreshTreeTask);
            } else {
                throw new Exception("Selected Object is not a TestCriteria!");
            }
        } else if (e.getActionCommand().equals("View Results")) {
            if (selectedObj instanceof cbit.vcell.numericstest.TestCriteriaNew) {
                TestCriteriaNew tCriteria = (TestCriteriaNew) selectedObj;
                getTestingFrameworkWindowManager().viewResults(tCriteria);
            } else {
                PopupGenerator.showErrorDialog(TestingFrameworkWindowPanel.this, "Selected Object is not a TestCriteria!");
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.COMPARERREGR_INTERNALREF_TESTCRITERIA) || e.getActionCommand().equals(TestingFrameworkPanel.COMPARERREGR_USERDEFREF_TESTCRITERIA)) {
            if (selectedObj instanceof cbit.vcell.numericstest.TestCriteriaNew) {
                TestCriteriaNew tCriteria = (TestCriteriaNew) selectedObj;
                SimulationStatus simStatus = getTestingFrameworkWindowManager().getRequestManager().getServerSimulationStatus(tCriteria.getSimInfo());
                if (simStatus.isRunning()) {
                    PopupGenerator.showErrorDialog(TestingFrameworkWindowPanel.this, "Selected simulation is still running!");
                    return;
                }
                SimulationInfo simulationInfo = tCriteria.getRegressionSimInfo();
                if (e.getActionCommand().equals(TestingFrameworkPanel.COMPARERREGR_USERDEFREF_TESTCRITERIA)) {
                    try {
                        simulationInfo = getUserSelectedSimulationInfo().getSimInfo();
                    } catch (UserCancelException e2) {
                        return;
                    }
                }
                if (simulationInfo == null) {
                    PopupGenerator.showErrorDialog(TestingFrameworkWindowPanel.this, "Either the selected simulation does not belong to a REGRESSION test or the regression simInfo is not set!");
                    return;
                }
                getTestingFrameworkWindowManager().compare(tCriteria, simulationInfo);
            } else {
                PopupGenerator.showErrorDialog(TestingFrameworkWindowPanel.this, "Selected Object is not a TestCriteria!");
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.DUPLICATE_TESTSUITE)) {
            if (selectedObj instanceof TestSuiteInfoNew) {
                TestSuiteInfoNew tsInfoOriginal = (TestSuiteInfoNew) selectedObj;
                TestingFrameworkWindowManager.NewTestSuiteUserInformation newTestSuiteUserInfo = getTestingFrameworkWindowManager().getNewTestSuiteInfoFromUser(tsInfoOriginal.getTSAnnotation(), tsInfoOriginal.getTSID());
                tasksV.add(new TFDuplicateTestSuite(getTestingFrameworkWindowManager(), tsInfoOriginal, newTestSuiteUserInfo.testSuiteInfoNew, newTestSuiteUserInfo.regrRefFlag));
                tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), newTestSuiteUserInfo.testSuiteInfoNew);
                tasksV.add(tfRefreshTreeTask);
            // getTestingFrameworkWindowManager().duplicateTestSuite(tsInfo);
            } else {
                throw new Exception("Selected Object is not a test suite! Cannot duplicate");
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.REMOVE_TESTCASE)) {
            if (selectedObj instanceof TestCaseNew) {
                String[][] rowData = new String[selectedTreePaths.length][3];
                TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCase();
                for (int i = 0; i < selectedTreePaths.length; i += 1) {
                    TestCaseNew tCase = (TestCaseNew) ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
                    rowData[i][0] = tsInfo.getTSID();
                    tasksV.add(new TFRemove(getTestingFrameworkWindowManager(), tCase));
                    if (tCase instanceof TestCaseNewBioModel) {
                        rowData[i][1] = "BM " + tCase.getVersion().getName();
                        rowData[i][2] = ((TestCaseNewBioModel) tCase).getSimContextName();
                    } else {
                        rowData[i][1] = "MM " + tCase.getVersion().getName();
                        rowData[i][2] = "N/A";
                    }
                }
                DialogUtils.showComponentOKCancelTableList(this, "Confirm Remove TestCase(s)", new String[] { "Test Suite", "Test Case", "App" }, rowData, null);
                tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
                tasksV.add(tfRefreshTreeTask);
            } else {
                throw new Exception("Selected Object is not a TestCase, cannot remove selection!");
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.REMOVE_TESTSUITE)) {
            if (selectedObj instanceof TestSuiteInfoNew) {
                TestSuiteInfoNew tsInfo = (TestSuiteInfoNew) selectedObj;
                String confirm = PopupGenerator.showWarningDialog(this, UserMessage.warn_deleteDocument.getMessage(tsInfo.getTSID()), UserMessage.warn_deleteDocument.getOptions(), UserMessage.warn_deleteDocument.getDefaultSelection());
                if (confirm.equals(UserMessage.OPTION_DELETE)) {
                    tasksV.add(new TFRemove(getTestingFrameworkWindowManager(), tsInfo));
                    tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
                    tasksV.add(tfRefreshTreeTask);
                } else {
                    throw UserCancelException.CANCEL_GENERIC;
                }
            // getTestingFrameworkWindowManager().removeTestSuite(tsInfo);
            } else {
                throw new Exception("Selected Object is not a test suite! Cannot add a test case");
            }
        } else if (e.getActionCommand().equals("Generate TestSuite Report")) {
            final TreePath[] selectedTreePathsLocal = selectedTreePaths;
            new Thread(new Runnable() {

                public void run() {
                    try {
                        for (int i = 0; selectedTreePathsLocal != null && i < selectedTreePathsLocal.length; i += 1) {
                            Object selTreeNode = ((BioModelNode) selectedTreePathsLocal[i].getLastPathComponent()).getUserObject();
                            if (selTreeNode instanceof TestSuiteInfoNew) {
                                Vector<AsynchClientTask> tasksVLocal = new java.util.Vector<AsynchClientTask>();
                                TestSuiteInfoNew tsInfo = (TestSuiteInfoNew) selTreeNode;
                                tasksVLocal.add(new cbit.vcell.client.task.TFUpdateRunningStatus(getTestingFrameworkWindowManager(), tsInfo));
                                tasksVLocal.add(new TFGenerateReport(getTestingFrameworkWindowManager(), tsInfo));
                                final String END_NOTIFIER = "END NOTIFIER";
                                tasksVLocal.add(new AsynchClientTask(END_NOTIFIER, AsynchClientTask.TASKTYPE_NONSWING_BLOCKING, false, false) {

                                    public void run(Hashtable<String, Object> hashTable) throws Exception {
                                        hashTable.put(END_NOTIFIER, END_NOTIFIER);
                                    }
                                });
                                tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
                                tasksVLocal.add(tfRefreshTreeTask);
                                AsynchClientTask[] tasksArr = new AsynchClientTask[tasksVLocal.size()];
                                tasksVLocal.copyInto(tasksArr);
                                Hashtable<String, Object> hashLocal = new Hashtable<String, Object>();
                                ClientTaskDispatcher.dispatch(TestingFrameworkWindowPanel.this, hashLocal, tasksArr, true);
                                // Wait for each report to complete before going on to next because report methods are not thread safe?
                                while (!hashLocal.contains(END_NOTIFIER)) {
                                    Thread.sleep(100);
                                }
                            } else {
                                throw new Exception("Error GenerateTestSuiteReport\nSelected Object is not a TestSuite");
                            }
                        }
                    } catch (Exception e) {
                        e.printStackTrace();
                        PopupGenerator.showErrorDialog(TestingFrameworkWindowPanel.this, "Error GenerateTestSuiteReport\n" + e.getMessage(), e);
                        return;
                    }
                }
            }).start();
            return;
        } else if (e.getActionCommand().equals("Generate TestCase Report")) {
            Vector<TestSuiteInfoNew> tsinV = new Vector<TestSuiteInfoNew>();
            for (int i = 0; selectedTreePaths != null && i < selectedTreePaths.length; i += 1) {
                Object selTreeNode = ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
                if (selTreeNode instanceof TestCaseNew) {
                    TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfTreePath(selectedTreePaths[i]);
                    if (!tsinV.contains(tsInfo)) {
                        tsinV.add(tsInfo);
                        tasksV.add(new cbit.vcell.client.task.TFUpdateRunningStatus(getTestingFrameworkWindowManager(), tsInfo));
                    }
                    tasksV.add(new TFGenerateReport(getTestingFrameworkWindowManager(), (TestCaseNew) selTreeNode));
                } else {
                    throw new Exception("Selected Object is not a TestCase");
                }
            }
            tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), (tsinV.size() == 1 ? tsinV.elementAt(0) : null));
            tasksV.add(tfRefreshTreeTask);
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.GENTCRITREPORT_INTERNALREF_TESTCRITERIA) || e.getActionCommand().equals(TestingFrameworkPanel.GENTCRITREPORT_USERDEFREF_TESTCRITERIA)) {
            TFGenerateReport.VCDocumentAndSimInfo userDefinedRegrRef = null;
            if (e.getActionCommand().equals(TestingFrameworkPanel.GENTCRITREPORT_USERDEFREF_TESTCRITERIA)) {
                try {
                    userDefinedRegrRef = getUserSelectedSimulationInfo();
                } catch (UserCancelException e2) {
                    return;
                }
            }
            Vector<TestSuiteInfoNew> tsinV = new Vector<TestSuiteInfoNew>();
            for (int i = 0; selectedTreePaths != null && i < selectedTreePaths.length; i += 1) {
                Object selTreeNode = ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
                if (selTreeNode instanceof TestCriteriaNew) {
                    TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfTreePath(selectedTreePaths[i]);
                    if (!tsinV.contains(tsInfo)) {
                        tsinV.add(tsInfo);
                        tasksV.add(new cbit.vcell.client.task.TFUpdateRunningStatus(getTestingFrameworkWindowManager(), tsInfo));
                    }
                    tasksV.add(new TFGenerateReport(getTestingFrameworkWindowManager(), (TestCaseNew) ((BioModelNode) selectedTreePaths[i].getParentPath().getLastPathComponent()).getUserObject(), (TestCriteriaNew) selTreeNode, userDefinedRegrRef));
                } else {
                    throw new Exception("Selected Object is not a TestCriteria");
                }
            }
            tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), (tsinV.size() == 1 ? tsinV.elementAt(0) : null));
            tasksV.add(tfRefreshTreeTask);
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.REMOVE_DIFF_TESTCRITERIA)) {
            final int OLDER = 0;
            final int NEWER = 1;
            final TestSuiteInfoNew[] testSuiteInfoHolder = new TestSuiteInfoNew[2];
            if (selectedTreePaths.length == 2 && ((BioModelNode) selectedTreePaths[0].getLastPathComponent()).getUserObject() instanceof TestSuiteInfoNew && ((BioModelNode) selectedTreePaths[1].getLastPathComponent()).getUserObject() instanceof TestSuiteInfoNew) {
                // do outside task because its quick
                TestSuiteInfoNew testSuiteInfoOlder = (TestSuiteInfoNew) ((BioModelNode) selectedTreePaths[0].getLastPathComponent()).getUserObject();
                TestSuiteInfoNew testSuiteInfoNewer = (TestSuiteInfoNew) ((BioModelNode) selectedTreePaths[1].getLastPathComponent()).getUserObject();
                if (testSuiteInfoOlder.getTSDate().compareTo(testSuiteInfoNewer.getTSDate()) > 0) {
                    TestSuiteInfoNew temp = testSuiteInfoOlder;
                    testSuiteInfoOlder = testSuiteInfoNewer;
                    testSuiteInfoNewer = temp;
                }
                testSuiteInfoHolder[OLDER] = testSuiteInfoOlder;
                testSuiteInfoHolder[NEWER] = testSuiteInfoNewer;
                AsynchClientTask showDiffTask = new AsynchClientTask("Show Differential TestCriteria...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

                    public void run(Hashtable<String, Object> hashTable) throws Exception {
                        ArrayList<TestSuiteNew> bothTestSuites = new ArrayList<TestSuiteNew>();
                        if (getClientTaskStatusSupport() != null) {
                            getClientTaskStatusSupport().setProgress(25);
                            getClientTaskStatusSupport().setMessage("Getting TestSuiteInfo '" + testSuiteInfoHolder[OLDER].getTSID() + "'");
                        }
                        bothTestSuites.add(getDocumentManager().getTestSuite(testSuiteInfoHolder[OLDER].getTSKey()));
                        if (getClientTaskStatusSupport() != null) {
                            getClientTaskStatusSupport().setProgress(50);
                            getClientTaskStatusSupport().setMessage("Getting TestSuiteInfo '" + testSuiteInfoHolder[NEWER].getTSID() + "'");
                        }
                        bothTestSuites.add(getDocumentManager().getTestSuite(testSuiteInfoHolder[NEWER].getTSKey()));
                        HashMap<String, TestCriteriaNew> olderTestCritHashMap = new HashMap<String, TestCriteriaNew>();
                        ArrayList<String> olderTestCaseBaseNames = new ArrayList<String>();
                        TreeMap<String, TestCriteriaNew> newDiffTestCriteria = new TreeMap<String, TestCriteriaNew>();
                        int excludedCount = 0;
                        for (TestSuiteNew currentTestSuite : bothTestSuites) {
                            BigDecimal currentTestSuiteKey = currentTestSuite.getTSInfoNew().getTSKey();
                            for (TestCaseNew tcn : currentTestSuite.getTestCases()) {
                                String prefixInfo = "TS='" + currentTestSuite.getTSInfoNew().getTSID() + "' Type='" + tcn.getType() + "' ";
                                String baseName = (tcn instanceof TestCaseNewBioModel ? "BioModel='" + ((TestCaseNewBioModel) tcn).getBioModelInfo().getVersion().getName() + "' App='" + ((TestCaseNewBioModel) tcn).getSimContextName() + "'" : "MathModel='" + ((TestCaseNewMathModel) tcn).getMathModelInfo().getVersion().getName()) + "'";
                                if (currentTestSuite.getTSInfoNew().getTSKey().equals(testSuiteInfoHolder[OLDER].getTSKey())) {
                                    if (!olderTestCaseBaseNames.contains(baseName)) {
                                        olderTestCaseBaseNames.add(baseName);
                                    } else {
                                        throw new Exception("Old testcase names duplicated.");
                                    }
                                }
                                for (TestCriteriaNew tcrit : tcn.getTestCriterias()) {
                                    String name = baseName + " Sim='" + tcrit.getSimInfo().getName() + "'";
                                    if (olderTestCritHashMap.containsKey(name)) {
                                        if (currentTestSuiteKey.equals(testSuiteInfoHolder[OLDER].getTSKey())) {
                                            throw new Exception("---Problem--- Older names not unique");
                                        }
                                        continue;
                                    } else if (currentTestSuiteKey.equals(testSuiteInfoHolder[NEWER].getTSKey())) {
                                        if (!olderTestCaseBaseNames.contains(baseName)) {
                                            // this happens when new TestSuite has added TestCase after duplication
                                            excludedCount += 1;
                                        } else if (newDiffTestCriteria.put(prefixInfo + name, tcrit) != null) {
                                            throw new Exception("---Problem--- Newer added names not unique");
                                        }
                                        continue;
                                    }
                                    olderTestCritHashMap.put(name, tcrit);
                                }
                            }
                        }
                        if (newDiffTestCriteria.size() > 0) {
                            if (getClientTaskStatusSupport() != null) {
                                getClientTaskStatusSupport().setMessage("Showing Differential list...");
                            }
                            String[][] rowData = new String[newDiffTestCriteria.size()][1];
                            String[] addedNamesArr = newDiffTestCriteria.keySet().toArray(new String[0]);
                            for (int i = 0; i < addedNamesArr.length; i++) {
                                rowData[i][0] = addedNamesArr[i];
                            }
                            final String DELETE = "Delete";
                            TableListResult result = DialogUtils.showComponentOptionsTableList(gettestingFrameworkPanel(), "Remove TestCriteria in TS='" + testSuiteInfoHolder[NEWER].getTSID() + "' that were not in TS='" + testSuiteInfoHolder[OLDER].getTSID() + "' (count=" + rowData.length + " of " + olderTestCritHashMap.size() + ", excluded=" + excludedCount + ")", new String[] { "Diff TestCriteria" }, rowData, ListSelectionModel.MULTIPLE_INTERVAL_SELECTION, null, new String[] { DELETE, "Cancel" }, DELETE, null);
                            if (result != null && result.selectedOption != null && result.selectedOption.equals(DELETE) && result.selectedTableRows != null && result.selectedTableRows.length > 0) {
                                TestCriteriaNew[] allNewDiffTeestCritArr = newDiffTestCriteria.values().toArray(new TestCriteriaNew[0]);
                                TestCriteriaNew[] selTestCritsArr = new TestCriteriaNew[result.selectedTableRows.length];
                                for (int i = 0; i < result.selectedTableRows.length; i++) {
                                    selTestCritsArr[i] = allNewDiffTeestCritArr[result.selectedTableRows[i]];
                                // System.out.println("Selected= "+rowData[result.selectedTableRows[i]][0]+"  --  SimName="+selTestCritsArrHolder[0][i].getSimInfo().getVersion().getName());
                                }
                                hashTable.put(TFRemoveTestCriteria.REMOVE_THESE_TESTCRITERIAS, selTestCritsArr);
                            } else {
                                throw UserCancelException.CANCEL_GENERIC;
                            }
                        } else {
                            throw new Exception("No differential TestCriteria found");
                        }
                    }
                };
                AsynchClientTask shouldRefreshTask = new // Prevent annoying refresh if cancel
                AsynchClientTask(// Prevent annoying refresh if cancel
                "", // Prevent annoying refresh if cancel
                AsynchClientTask.TASKTYPE_SWING_NONBLOCKING) {

                    public void run(Hashtable<String, Object> hashTable) throws Exception {
                        new TFRefresh(getTestingFrameworkWindowManager(), testSuiteInfoHolder[NEWER]).run(hashTable);
                    }
                };
                tasksV.add(showDiffTask);
                tasksV.add(new TFRemoveTestCriteria(getTestingFrameworkWindowManager()));
                tasksV.add(shouldRefreshTask);
            // tasksV.add(new TFRefresh(getTestingFrameworkWindowManager(),testSuiteInfoHolder[NEWER]));
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.REMOVE_TESTCRITERIA)) {
            if (selectedObj instanceof TestCriteriaNew) {
                ArrayList<TestCriteriaNew> selTestCritsArr = new ArrayList<TestCriteriaNew>();
                for (int i = 0; selectedTreePaths != null && i < selectedTreePaths.length; i += 1) {
                    Object selTreeNode = ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
                    if (selTreeNode instanceof TestCriteriaNew) {
                        selTestCritsArr.add(((TestCriteriaNew) selTreeNode));
                    }
                }
                final String DELETE = "Delete";
                String response = DialogUtils.showWarningDialog(gettestingFrameworkPanel(), "Delete " + selTestCritsArr.size() + " TestCriterias?", new String[] { DELETE, "Cancel" }, DELETE);
                if (response != null && response.equals(DELETE)) {
                    tasksV.add(new TFRemoveTestCriteria(getTestingFrameworkWindowManager(), selTestCritsArr.toArray(new TestCriteriaNew[0])));
                    TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCriteria();
                    tasksV.add(new TFRefresh(getTestingFrameworkWindowManager(), tsInfo));
                } else {
                    throw UserCancelException.CANCEL_GENERIC;
                }
            } else {
                throw new Exception("Selected Object is not a TestCriteria! Cannot remove test criteria.");
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.EDIT_TESTCRITERIA)) {
            if (selectedObj instanceof TestCriteriaNew) {
                TestCriteriaNew tCriteria = (TestCriteriaNew) selectedObj;
                TestCaseNew testCase = gettestingFrameworkPanel().getTestCaseOfSelectedCriteria();
                TestCriteriaNew tcritNew = getTestingFrameworkWindowManager().getNewTestCriteriaFromUser(testCase.getType(), tCriteria);
                tasksV.add(new TFUpdateTestCriteria(getTestingFrameworkWindowManager(), tCriteria, tcritNew));
                TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCriteria();
                tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
                tasksV.add(tfRefreshTreeTask);
            } else {
                throw new Exception("Selected Object is not a TestCriteria! Cannot edit test criteria.");
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.COPY_TCRIT_SIMID)) {
            if (selectedObj instanceof TestCriteriaNew) {
                TestCriteriaNew tCriteria = (TestCriteriaNew) selectedObj;
                KeyValue testCritSimID = tCriteria.getSimInfo().getVersion().getVersionKey();
                VCellTransferable.sendToClipboard(testCritSimID.toString());
                return;
            } else {
                throw new Exception("Selected Object is not a TestCriteria! Copy simid failed.");
            }
        } else if (e.getActionCommand().equals(TestingFrameworkPanel.LOAD_MODEL)) {
            final String LOAD_THIS_MODEL = "LOAD_THIS_MODEL";
            AsynchClientTask modelInfoTask = new AsynchClientTask("Finding Model Info...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

                @Override
                public void run(Hashtable<String, Object> hashTable) throws Exception {
                    VCDocumentInfo vcDocumentInfo = null;
                    if (selectedObj instanceof TestCaseNew) {
                        TestCaseNew testCase = (TestCaseNew) selectedObj;
                        if (testCase instanceof TestCaseNewMathModel) {
                            vcDocumentInfo = ((TestCaseNewMathModel) testCase).getMathModelInfo();
                        } else if (testCase instanceof TestCaseNewBioModel) {
                            vcDocumentInfo = ((TestCaseNewBioModel) testCase).getBioModelInfo();
                        } else {
                            throw new IllegalArgumentException("Unexpected TestCase type=" + testCase.getClass().getName());
                        }
                        hashTable.put(LOAD_THIS_MODEL, vcDocumentInfo);
                    } else if (selectedObj instanceof LoadTestTreeInfo) {
                        throw new Exception("Not yet implemented for LoadTest.");
                    // LoadTestTreeInfo loadTestTreeInfo = (LoadTestTreeInfo)selectedObj;
                    // if(loadTestTreeInfo.modelType.equals(LoadTestInfoOpResults.MODELTYPE_BIO)){
                    // vcDocumentInfo = getDocumentManager().getBioModelInfo(loadTestTreeInfo.bioOrMathModelKey);
                    // }else if(loadTestTreeInfo.modelType.equals(LoadTestInfoOpResults.MODELTYPE_MATH)){
                    // vcDocumentInfo = getDocumentManager().getMathModelInfo(loadTestTreeInfo.bioOrMathModelKey);
                    // }else{
                    // throw new IllegalArgumentException("Unexpected LoadTestTreeInfo type="+loadTestTreeInfo.modelType);
                    // }
                    // hashTable.put(LOAD_THIS_MODEL, vcDocumentInfo);
                    }
                }
            };
            AsynchClientTask openModelTask = new AsynchClientTask("Opening model...", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

                @Override
                public void run(Hashtable<String, Object> hashTable) throws Exception {
                    if (selectedObj instanceof TestCaseNew) {
                        getTestingFrameworkWindowManager().loadModel((VCDocumentInfo) hashTable.get(LOAD_THIS_MODEL));
                    } else if (selectedObj instanceof LoadTestTreeInfo) {
                        throw new Exception("Not yet implemented for LoadTest.");
                    } else {
                        throw new Exception("Load Model expecting TestCaseNew or LoadTestTreeInfo but got " + selectedObj.getClass().getName());
                    }
                }
            };
            tasksV.add(modelInfoTask);
            tasksV.add(openModelTask);
        }
        // tasksV.add(tfRefreshTreeTask);
        AsynchClientTask[] tasksArr = new AsynchClientTask[tasksV.size()];
        tasksV.copyInto(tasksArr);
        ClientTaskDispatcher.dispatch(this, hash, tasksArr, true);
    } catch (Throwable exc) {
        if (!(exc instanceof UserCancelException) && !(exc instanceof UtilCancelException)) {
            exc.printStackTrace(System.out);
            PopupGenerator.showErrorDialog(TestingFrameworkWindowPanel.this, exc.getMessage(), exc);
        }
    }
}

Example 13 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class MathVerifier method scan.

/**
 * Insert the method's description here.
 * Creation date: (2/2/01 3:40:29 PM)
 */
public void scan(User[] users, boolean bUpdateDatabase, KeyValue[] bioAndMathModelKeys) throws MathException, MappingException, SQLException, DataAccessException, ModelException, ExpressionException {
    // java.util.Calendar calendar = java.util.GregorianCalendar.getInstance();
    // //	calendar.set(2002,java.util.Calendar.MAY,7+1);
    // calendar.set(2002,java.util.Calendar.JULY,1);
    // final java.util.Date fluxCorrectionOrDisablingBugFixDate = calendar.getTime();
    // //	calendar.set(2001,java.util.Calendar.JUNE,13+1);
    // calendar.set(2002,java.util.Calendar.JANUARY,1);
    // final java.util.Date totalVolumeCorrectionFixDate = calendar.getTime();
    KeyValue[] sortedBioAndMathModelKeys = null;
    if (bioAndMathModelKeys != null) {
        sortedBioAndMathModelKeys = bioAndMathModelKeys.clone();
        Arrays.sort(sortedBioAndMathModelKeys, keyValueCpmparator);
    }
    for (int i = 0; i < users.length; i++) {
        User user = users[i];
        BioModelInfo[] bioModelInfos0 = dbServerImpl.getBioModelInfos(user, false);
        MathModelInfo[] mathModelInfos0 = dbServerImpl.getMathModelInfos(user, false);
        if (lg.isTraceEnabled())
            lg.trace("Testing user '" + user + "'");
        Vector<VCDocumentInfo> userBioAndMathModelInfoV = new Vector<VCDocumentInfo>();
        userBioAndMathModelInfoV.addAll(Arrays.asList(bioModelInfos0));
        userBioAndMathModelInfoV.addAll(Arrays.asList(mathModelInfos0));
        // 
        for (int j = 0; j < userBioAndMathModelInfoV.size(); j++) {
            // 
            // if certain Bio or Math models are requested, then filter all else out
            // 
            VCDocumentInfo documentInfo = userBioAndMathModelInfoV.elementAt(j);
            KeyValue versionKey = documentInfo.getVersion().getVersionKey();
            if (sortedBioAndMathModelKeys != null) {
                int srch = Arrays.binarySearch(sortedBioAndMathModelKeys, versionKey, keyValueCpmparator);
                if (srch < 0) {
                    continue;
                }
            }
            if (!(documentInfo instanceof BioModelInfo)) {
                continue;
            }
            // 
            if (skipHash.contains(versionKey)) {
                System.out.println("skipping " + (documentInfo instanceof BioModelInfo ? "BioModel" : "MathModel") + " with key '" + versionKey + "'");
                continue;
            }
            try {
                // 
                // read in the BioModel and MathModel from the database
                // 
                VCDocument vcDocumentFromDBCache = null;
                BigString vcDocumentXMLFromDBCache = null;
                try {
                    long startTime = System.currentTimeMillis();
                    if (documentInfo instanceof BioModelInfo) {
                        vcDocumentXMLFromDBCache = new BigString(dbServerImpl.getServerDocumentManager().getBioModelXML(new QueryHashtable(), user, versionKey, false));
                        vcDocumentFromDBCache = XmlHelper.XMLToBioModel(new XMLSource(vcDocumentXMLFromDBCache.toString()));
                    } else {
                        vcDocumentXMLFromDBCache = new BigString(dbServerImpl.getServerDocumentManager().getMathModelXML(new QueryHashtable(), user, versionKey, false));
                        vcDocumentFromDBCache = XmlHelper.XMLToMathModel(new XMLSource(vcDocumentXMLFromDBCache.toString()));
                    }
                    if (bUpdateDatabase && testFlag.equals(MathVerifier.MV_LOAD_XML)) {
                        updateLoadModelsStatTable_LoadTest(System.currentTimeMillis() - startTime, versionKey, null);
                    }
                } catch (Exception e) {
                    lg.error(e.getMessage(), e);
                    if (bUpdateDatabase && testFlag.equals(MathVerifier.MV_LOAD_XML)) {
                        updateLoadModelsStatTable_LoadTest(0, versionKey, e);
                    }
                }
                if (testFlag.equals(MathVerifier.MV_LOAD_XML)) {
                    // 
                    if (vcDocumentXMLFromDBCache != null) {
                        testDocumentLoad(bUpdateDatabase, user, documentInfo, vcDocumentFromDBCache);
                    }
                } else if (testFlag.equals(MathVerifier.MV_DEFAULT)) {
                    // 
                    if (vcDocumentFromDBCache instanceof BioModel) {
                        BioModel bioModel = (BioModel) vcDocumentFromDBCache;
                        checkMathForBioModel(vcDocumentXMLFromDBCache, bioModel, user, bUpdateDatabase);
                    }
                }
            } catch (Throwable e) {
                // exception in whole BioModel
                lg.error(e.getMessage(), e);
            // can't update anything in database, since we don't know what simcontexts are involved
            }
        }
    }
}

Example 14 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class DbDriver method curate.

/**
 * Insert the method's description here.
 * Creation date: (5/23/2006 10:44:52 AM)
 */
public static VCDocumentInfo curate(CurateSpec curateSpec, Connection con, User user, DatabaseSyntax dbSyntax) throws DataAccessException, SQLException {
    VersionableType vType = null;
    if (curateSpec.getVCDocumentInfo() instanceof BioModelInfo) {
        vType = VersionableType.BioModelMetaData;
    } else if (curateSpec.getVCDocumentInfo() instanceof MathModelInfo) {
        vType = VersionableType.MathModelMetaData;
    } else {
        throw new DataAccessException("Expecting BioModelInfo or MathModelInfo but got type=" + curateSpec.getVCDocumentInfo().getClass().getName());
    }
    KeyValue vKey = curateSpec.getVCDocumentInfo().getVersion().getVersionKey();
    Version dbVersion = getVersionFromKeyValue(con, vType, vKey);
    // Must be owner to curate
    if (!dbVersion.getOwner().compareEqual(user)) {
        throw new PermissionException("Cannot curate " + vType.getTypeName() + " \"" + dbVersion.getName() + "\" (" + vKey + "), not owned by " + user.getName());
    }
    VersionFlag updatedVersionFlag = null;
    if (curateSpec.getCurateType() == CurateSpec.ARCHIVE) {
        if (!dbVersion.getFlag().compareEqual(VersionFlag.Current)) {
            throw new IllegalArgumentException("Only non-archived, non-published documents can be ARCHIVED");
        }
        updatedVersionFlag = VersionFlag.Archived;
    } else if (curateSpec.getCurateType() == CurateSpec.PUBLISH) {
        // Must have PUBLISH rights
        if (!dbVersion.getOwner().isPublisher()) {
            throw new PermissionException("Cannot curate " + vType.getTypeName() + " \"" + dbVersion.getName() + "\" (" + vKey + "), user " + user.getName() + " not granted PUBLISHING rights");
        }
        // Must be ARCHIVED and Public before PUBLISH is allowed
        if (!dbVersion.getFlag().compareEqual(VersionFlag.Archived) || !(dbVersion.getGroupAccess() instanceof GroupAccessAll)) {
            throw new IllegalArgumentException("Only ARCHIVED documents with PUBLIC permission can be PUBLISHED");
        }
        updatedVersionFlag = VersionFlag.Published;
    } else {
        throw new DataAccessException("Expecting CurateType " + CurateSpec.ARCHIVE + "(ARCHIVE) or " + CurateSpec.PUBLISH + "(PUBLISH) but got type=" + curateSpec.getCurateType());
    }
    VersionTable vTable = VersionTable.getVersionTable(vType);
    String set = vTable.versionFlag.getQualifiedColName() + " = " + updatedVersionFlag.getIntValue();
    String cond = vTable.id.getQualifiedColName() + " = " + vKey;
    String sql = DatabasePolicySQL.enforceOwnershipUpdate(user, vTable, set, cond);
    int numRowsProcessed = updateCleanSQL(con, sql);
    // Clear XML
    if (vType.equals(VersionableType.BioModelMetaData)) {
        updateCleanSQL(con, "DELETE FROM " + BioModelXMLTable.table.getTableName() + " WHERE " + BioModelXMLTable.table.bioModelRef.getQualifiedColName() + " = " + vKey.toString());
    } else if (vType.equals(VersionableType.MathModelMetaData)) {
        updateCleanSQL(con, "DELETE FROM " + MathModelXMLTable.table.getTableName() + " WHERE " + MathModelXMLTable.table.mathModelRef.getQualifiedColName() + " = " + vKey.toString());
    }
    VCDocumentInfo dbVCDocumentInfo = (VCDocumentInfo) getVersionableInfos(con, user, vType, false, vKey, false, dbSyntax).elementAt(0);
    return dbVCDocumentInfo;
}

Example 15 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class DatabaseWindowManager method comparePreviousEdition.

/**
 * Comment
 */
public void comparePreviousEdition() {
    // 
    if (getPanelSelection() == null) {
        PopupGenerator.showErrorDialog(this, "Error Comparing documents : No first document selected");
        return;
    }
    VCDocumentInfo thisDocumentInfo = getPanelSelection();
    // 
    // Get the previous version of the documentInfo
    // 
    VCDocumentInfo[] documentVersionsList = null;
    try {
        documentVersionsList = getDocumentVersionDates(thisDocumentInfo);
    } catch (DataAccessException e) {
        PopupGenerator.showErrorDialog(this, "Error accessing second document!");
    }
    if (documentVersionsList == null || documentVersionsList.length == 0) {
        PopupGenerator.showErrorDialog(this, "Error Comparing documents : Not Enough Versions to Compare!");
        return;
    }
    // 
    // Obtaining the previous version of the current biomodel. Set the previousBioModelInfo to
    // the first version in the bioModelVersionList. Then compare all the versions in the list
    // with the previousBioModelInfo to see if any of them are before previousBioModelInfo
    // datewise. If so, update previousBioModelInfo. The biomodelinfo stored in previousBioModelInfo
    // when it comes out of the loop is the previous version of the biomodel.
    // 
    VCDocumentInfo previousDocumentInfo = documentVersionsList[0];
    boolean bPrevious = false;
    for (int i = 0; i < documentVersionsList.length; i++) {
        if (documentVersionsList[i].getVersion().getDate().before(thisDocumentInfo.getVersion().getDate())) {
            bPrevious = true;
            previousDocumentInfo = documentVersionsList[i];
        } else {
            break;
        }
    }
    if (previousDocumentInfo.equals(documentVersionsList[0]) && !bPrevious) {
        PopupGenerator.showErrorDialog(this, "Current Version is the oldest! Choose another Version or Model to compare!");
        return;
    }
    // Check if both document types are of the same kind. If not, throw an error.
    if (((thisDocumentInfo instanceof BioModelInfo) && !(previousDocumentInfo instanceof BioModelInfo)) || ((thisDocumentInfo instanceof MathModelInfo) && !(previousDocumentInfo instanceof MathModelInfo)) || ((thisDocumentInfo instanceof GeometryInfo) && !(previousDocumentInfo instanceof GeometryInfo))) {
        PopupGenerator.showErrorDialog(this, "Error Comparing documents : The two documents are not of the same type!");
        return;
    }
    // Now that we have both the document versions to be compared, do the comparison and display the result
    compareWithOther(previousDocumentInfo, thisDocumentInfo);
}