Example 1 with TestCaseNewBioModel
use of cbit.vcell.numericstest.TestCaseNewBioModel in project vcell by virtualcell.
the class TestingFrameworkWindowManager method addTestCases.
/**
* Insert the method's description here.
* Creation date: (4/10/2003 11:27:32 AM)
* @param testCase cbit.vcell.numericstestingframework.TestCase
*/
public String addTestCases(final TestSuiteInfoNew tsInfo, final TestCaseNew[] testCaseArray, int regrRefFlag, ClientTaskStatusSupport pp) {
if (tsInfo == null) {
throw new IllegalArgumentException("TestSuiteInfo cannot be null");
}
if (testCaseArray == null || testCaseArray.length == 0) {
throw new IllegalArgumentException("TestCases cannot be null / empty");
}
// make modifiable list
List<TestCaseNew> testCases = new ArrayList<>(Arrays.asList(testCaseArray));
StringBuffer errors = new StringBuffer();
// When a testCase (mathmodel/biomodel) is added to a testSuite, a new version of the mathModel/biomodel should be created.
// Also, the simulations in the original mathmodel/biomodel should be rid of their parent simulation reference.
pp.setMessage("Getting testSuite");
pp.setProgress(1);
TestSuiteNew testSuite = null;
try {
testSuite = getRequestManager().getDocumentManager().getTestSuite(tsInfo.getTSKey());
} catch (Throwable e) {
throw new RuntimeException("couldn't get test suite " + tsInfo.getTSID() + "\n" + e.getClass().getName() + " mesg=" + e.getMessage() + "\n");
}
if (testSuite != null && testSuite.getTSInfoNew().isLocked()) {
throw new RuntimeException("Cannot addTestCases to locked table");
}
if (testSuite != null) {
// Saving BioModels
TestCaseNew[] existingTestCases = testSuite.getTestCases();
java.util.HashMap<KeyValue, BioModel> bioModelHashMap = new java.util.HashMap<KeyValue, BioModel>();
// if(existingTestCases != null){
// Find BioModels, Using the same BM reference for sibling Applications
int pcounter = 0;
// use iterator to allow removal of test case from collection if exception
Iterator<TestCaseNew> iter = testCases.iterator();
while (iter.hasNext()) {
TestCaseNew testCase = iter.next();
pp.setProgress(Math.max(1, ((int) ((pcounter++ / (double) (testCases.size() * 3)) * 100))));
pp.setMessage("Checking " + testCase.getVersion().getName());
try {
if (testCase instanceof TestCaseNewBioModel) {
TestCaseNewBioModel bioTestCase = (TestCaseNewBioModel) testCase;
//
if (bioModelHashMap.get(bioTestCase.getBioModelInfo().getVersion().getVersionKey()) == null) {
pp.setMessage("Getting BM " + testCase.getVersion().getName());
BioModel bioModel = getRequestManager().getDocumentManager().getBioModel(bioTestCase.getBioModelInfo().getVersion().getVersionKey());
if (!bioModel.getVersion().getOwner().equals(getRequestManager().getDocumentManager().getUser())) {
throw new Exception("BioModel does not belong to VCELLTESTACCOUNT, cannot proceed with test!");
}
//
// if biomodel already exists in same testsuite, then use this BioModel edition
//
BioModel newBioModel = null;
if (existingTestCases != null) {
for (int j = 0; newBioModel == null && j < existingTestCases.length; j++) {
if (existingTestCases[j] instanceof TestCaseNewBioModel) {
TestCaseNewBioModel existingTestCaseBioModel = (TestCaseNewBioModel) existingTestCases[j];
//
if (existingTestCaseBioModel.getBioModelInfo().getVersion().getBranchID().equals(bioTestCase.getBioModelInfo().getVersion().getBranchID())) {
//
if (existingTestCaseBioModel.getBioModelInfo().getVersion().getVersionKey().equals(bioTestCase.getBioModelInfo().getVersion().getVersionKey())) {
//
// same, store this "unchanged" in bioModelHashMap
//
newBioModel = bioModel;
} else {
//
throw new Exception("can't add new test case using (" + bioTestCase.getBioModelInfo().getVersion().getName() + " " + bioTestCase.getBioModelInfo().getVersion().getDate() + ")\n" + "a test case already exists with different edition of same BioModel dated " + existingTestCaseBioModel.getBioModelInfo().getVersion().getDate());
}
}
}
}
}
if (newBioModel == null) {
pp.setMessage("Saving BM " + testCase.getVersion().getName());
//
// some older models have membrane voltage variable names which are not unique
// (e.g. membranes 'pm' and 'nm' both have membrane voltage variables named 'Voltage_Membrane0')
//
// if this is the case, we will try to repair the conflict (for math testing purposes only) by renaming the voltage variables to their default values.
//
// Ordinarily, the conflict will be identified as an "Error" issue and the user will be prompted to repair before saving or math generation.
//
bioModel.refreshDependencies();
boolean bFoundIdentifierConflictUponLoading = hasDuplicateIdentifiers(bioModel);
if (bFoundIdentifierConflictUponLoading) {
//
// look for two MembraneVoltage instances with same variable name, rename all
//
HashSet<String> membraneVoltageVarNames = new HashSet<String>();
ArrayList<MembraneVoltage> membraneVoltageVars = new ArrayList<MembraneVoltage>();
for (Structure struct : bioModel.getModel().getStructures()) {
if (struct instanceof Membrane) {
MembraneVoltage membraneVoltage = ((Membrane) struct).getMembraneVoltage();
if (membraneVoltage != null) {
membraneVoltageVars.add(membraneVoltage);
membraneVoltageVarNames.add(membraneVoltage.getName());
}
}
}
if (membraneVoltageVars.size() != membraneVoltageVarNames.size()) {
// rename them all to the default names
for (MembraneVoltage memVoltage : membraneVoltageVars) {
memVoltage.setName(Membrane.getDefaultMembraneVoltageName(memVoltage.getMembrane().getName()));
}
}
}
SimulationContext[] simContexts = bioModel.getSimulationContexts();
for (int j = 0; j < simContexts.length; j++) {
simContexts[j].clearVersion();
GeometrySurfaceDescription gsd = simContexts[j].getGeometry().getGeometrySurfaceDescription();
if (gsd != null) {
GeometricRegion[] grArr = gsd.getGeometricRegions();
if (grArr == null) {
gsd.updateAll();
}
}
MathMapping mathMapping = simContexts[j].createNewMathMapping();
// for older models that do not have absolute compartment sizes set, but have relative sizes (SVR/VF); or if there is only one compartment with size not set,
// compute absolute compartment sizes using relative sizes and assuming a default value of '1' for one of the compartments.
// Otherwise, the math generation will fail, since for the relaxed topology (VCell 5.3 and later) absolute compartment sizes are required.
GeometryContext gc = simContexts[j].getGeometryContext();
if (simContexts[j].getGeometry().getDimension() == 0 && ((gc.isAllSizeSpecifiedNull() && !gc.isAllVolFracAndSurfVolSpecifiedNull()) || (gc.getModel().getStructures().length == 1 && gc.isAllSizeSpecifiedNull()))) {
// choose the first structure in model and set its size to '1'.
Structure struct = simContexts[j].getModel().getStructure(0);
double structSize = 1.0;
StructureSizeSolver.updateAbsoluteStructureSizes(simContexts[j], struct, structSize, struct.getStructureSize().getUnitDefinition());
}
simContexts[j].setMathDescription(mathMapping.getMathDescription());
}
Simulation[] sims = bioModel.getSimulations();
String[] simNames = new String[sims.length];
for (int j = 0; j < sims.length; j++) {
// prevents parent simulation (from the original mathmodel) reference connection
// Otherwise it will refer to data from previous (parent) simulation.
sims[j].clearVersion();
simNames[j] = sims[j].getName();
// if(sims[j].getSolverTaskDescription().getSolverDescription().equals(SolverDescription.FiniteVolume)){
// sims[j].getSolverTaskDescription().setSolverDescription(SolverDescription.FiniteVolumeStandalone);
// }
}
newBioModel = getRequestManager().getDocumentManager().save(bioModel, simNames);
}
bioModelHashMap.put(bioTestCase.getBioModelInfo().getVersion().getVersionKey(), newBioModel);
}
}
} catch (Throwable e) {
String identifier = testCase.getVersion() != null ? "Name=" + testCase.getVersion().getName() : "TCKey=" + testCase.getTCKey();
if (lg.isInfoEnabled()) {
lg.info(identifier, e);
}
errors.append("Error collecting BioModel for TestCase " + identifier + '\n' + e.getClass().getName() + " " + e.getMessage() + '\n');
// remove to avoid further processing attempts
iter.remove();
}
}
// }
// then process each BioModelTestCase individually
// if(bioModelHashMap != null){
pcounter = 0;
for (TestCaseNew testCase : testCases) {
pp.setProgress(Math.max(1, ((int) ((pcounter++ / (double) (testCases.size() * 3)) * 100))));
pp.setMessage("Checking " + testCase.getVersion().getName());
try {
AddTestCasesOP testCaseOP = null;
if (testCase instanceof TestCaseNewBioModel) {
pp.setMessage("Processing BM " + testCase.getVersion().getName());
TestCaseNewBioModel bioTestCase = (TestCaseNewBioModel) testCase;
BioModel newBioModel = (BioModel) bioModelHashMap.get(bioTestCase.getBioModelInfo().getVersion().getVersionKey());
if (newBioModel == null) {
throw new Exception("BioModel not found");
}
SimulationContext simContext = null;
for (int j = 0; j < newBioModel.getSimulationContexts().length; j++) {
if (newBioModel.getSimulationContext(j).getName().equals(bioTestCase.getSimContextName())) {
simContext = newBioModel.getSimulationContext(j);
}
}
Simulation[] newSimulations = simContext.getSimulations();
AddTestCriteriaOPBioModel[] testCriteriaOPs = new AddTestCriteriaOPBioModel[newSimulations.length];
for (int j = 0; j < newSimulations.length; j++) {
TestCriteriaNewBioModel tcritOrigForSimName = null;
for (int k = 0; bioTestCase.getTestCriterias() != null && k < bioTestCase.getTestCriterias().length; k += 1) {
if (bioTestCase.getTestCriterias()[k].getSimInfo().getName().equals(newSimulations[j].getName())) {
tcritOrigForSimName = (TestCriteriaNewBioModel) bioTestCase.getTestCriterias()[k];
break;
}
}
KeyValue regressionBioModelKey = null;
KeyValue regressionBioModelSimKey = null;
if (bioTestCase.getType().equals(TestCaseNew.REGRESSION)) {
if (regrRefFlag == TestingFrameworkWindowManager.COPY_REGRREF) {
regressionBioModelKey = (tcritOrigForSimName != null && tcritOrigForSimName.getRegressionBioModelInfo() != null ? tcritOrigForSimName.getRegressionBioModelInfo().getVersion().getVersionKey() : null);
regressionBioModelSimKey = (tcritOrigForSimName != null && tcritOrigForSimName.getRegressionSimInfo() != null ? tcritOrigForSimName.getRegressionSimInfo().getVersion().getVersionKey() : null);
} else if (regrRefFlag == TestingFrameworkWindowManager.ASSIGNORIGINAL_REGRREF) {
regressionBioModelKey = (tcritOrigForSimName != null ? bioTestCase.getBioModelInfo().getVersion().getVersionKey() : null);
regressionBioModelSimKey = (tcritOrigForSimName != null ? tcritOrigForSimName.getSimInfo().getVersion().getVersionKey() : null);
} else if (regrRefFlag == TestingFrameworkWindowManager.ASSIGNNEW_REGRREF) {
regressionBioModelKey = newBioModel.getVersion().getVersionKey();
regressionBioModelSimKey = newSimulations[j].getVersion().getVersionKey();
} else {
throw new IllegalArgumentException(this.getClass().getName() + ".addTestCases(...) BIOMODEL Unknown Regression Operation Flag");
}
}
testCriteriaOPs[j] = new AddTestCriteriaOPBioModel(testCase.getTCKey(), newSimulations[j].getVersion().getVersionKey(), regressionBioModelKey, regressionBioModelSimKey, (tcritOrigForSimName != null ? tcritOrigForSimName.getMaxAbsError() : new Double(1e-16)), (tcritOrigForSimName != null ? tcritOrigForSimName.getMaxRelError() : new Double(1e-9)), null);
}
testCaseOP = new AddTestCasesOPBioModel(new BigDecimal(tsInfo.getTSKey().toString()), newBioModel.getVersion().getVersionKey(), simContext.getKey(), bioTestCase.getType(), bioTestCase.getAnnotation(), testCriteriaOPs);
getRequestManager().getDocumentManager().doTestSuiteOP(testCaseOP);
}
} catch (Throwable e) {
errors.append("Error processing Biomodel for TestCase " + (testCase.getVersion() != null ? "Name=" + testCase.getVersion().getName() : "TCKey=" + testCase.getTCKey()) + "\n" + e.getClass().getName() + " " + e.getMessage() + "\n");
}
}
// }
// Process MathModels
pcounter = 0;
for (TestCaseNew testCase : testCases) {
pp.setProgress(Math.max(1, ((int) ((pcounter++ / (double) (testCases.size() * 3)) * 100))));
pp.setMessage("Checking " + testCase.getVersion().getName());
try {
AddTestCasesOP testCaseOP = null;
if (testCase instanceof TestCaseNewMathModel) {
TestCaseNewMathModel mathTestCase = (TestCaseNewMathModel) testCase;
pp.setMessage("Getting MathModel " + testCase.getVersion().getName());
MathModel mathModel = getRequestManager().getDocumentManager().getMathModel(mathTestCase.getMathModelInfo().getVersion().getVersionKey());
if (!mathModel.getVersion().getOwner().equals(getRequestManager().getDocumentManager().getUser())) {
throw new Exception("MathModel does not belong to VCELLTESTACCOUNT, cannot proceed with test!");
}
Simulation[] sims = mathModel.getSimulations();
String[] simNames = new String[sims.length];
for (int j = 0; j < sims.length; j++) {
// prevents parent simulation (from the original mathmodel) reference connection
// Otherwise it will refer to data from previous (parent) simulation.
sims[j].clearVersion();
simNames[j] = sims[j].getName();
// if(sims[j].getSolverTaskDescription().getSolverDescription().equals(SolverDescription.FiniteVolume)){
// sims[j].getSolverTaskDescription().setSolverDescription(SolverDescription.FiniteVolumeStandalone);
// }
}
pp.setMessage("Saving MathModel " + testCase.getVersion().getName());
MathModel newMathModel = getRequestManager().getDocumentManager().save(mathModel, simNames);
Simulation[] newSimulations = newMathModel.getSimulations();
AddTestCriteriaOPMathModel[] testCriteriaOPs = new AddTestCriteriaOPMathModel[newSimulations.length];
for (int j = 0; j < newSimulations.length; j++) {
TestCriteriaNewMathModel tcritOrigForSimName = null;
for (int k = 0; mathTestCase.getTestCriterias() != null && k < mathTestCase.getTestCriterias().length; k += 1) {
if (mathTestCase.getTestCriterias()[k].getSimInfo().getName().equals(newSimulations[j].getName())) {
tcritOrigForSimName = (TestCriteriaNewMathModel) mathTestCase.getTestCriterias()[k];
break;
}
}
KeyValue regressionMathModelKey = null;
KeyValue regressionMathModelSimKey = null;
if (mathTestCase.getType().equals(TestCaseNew.REGRESSION)) {
if (regrRefFlag == TestingFrameworkWindowManager.COPY_REGRREF) {
regressionMathModelKey = (tcritOrigForSimName != null && tcritOrigForSimName.getRegressionMathModelInfo() != null ? tcritOrigForSimName.getRegressionMathModelInfo().getVersion().getVersionKey() : null);
regressionMathModelSimKey = (tcritOrigForSimName != null && tcritOrigForSimName.getRegressionSimInfo() != null ? tcritOrigForSimName.getRegressionSimInfo().getVersion().getVersionKey() : null);
} else if (regrRefFlag == TestingFrameworkWindowManager.ASSIGNORIGINAL_REGRREF) {
regressionMathModelKey = (tcritOrigForSimName != null ? mathTestCase.getMathModelInfo().getVersion().getVersionKey() : null);
regressionMathModelSimKey = (tcritOrigForSimName != null ? tcritOrigForSimName.getSimInfo().getVersion().getVersionKey() : null);
} else if (regrRefFlag == TestingFrameworkWindowManager.ASSIGNNEW_REGRREF) {
regressionMathModelKey = newMathModel.getVersion().getVersionKey();
regressionMathModelSimKey = newSimulations[j].getVersion().getVersionKey();
} else {
throw new IllegalArgumentException(this.getClass().getName() + ".addTestCases(...) MATHMODEL Unknown Regression Operation Flag");
}
}
testCriteriaOPs[j] = new AddTestCriteriaOPMathModel(testCase.getTCKey(), newSimulations[j].getVersion().getVersionKey(), regressionMathModelKey, regressionMathModelSimKey, (tcritOrigForSimName != null ? tcritOrigForSimName.getMaxAbsError() : new Double(1e-16)), (tcritOrigForSimName != null ? tcritOrigForSimName.getMaxRelError() : new Double(1e-9)), null);
}
testCaseOP = new AddTestCasesOPMathModel(new BigDecimal(tsInfo.getTSKey().toString()), newMathModel.getVersion().getVersionKey(), mathTestCase.getType(), mathTestCase.getAnnotation(), testCriteriaOPs);
getRequestManager().getDocumentManager().doTestSuiteOP(testCaseOP);
}
} catch (Throwable e) {
errors.append("Error processing MathModel for TestCase " + (testCase.getVersion() != null ? "Name=" + testCase.getVersion().getName() : "TCKey=" + testCase.getTCKey()) + "\n" + e.getClass().getName() + " " + e.getMessage() + "\n");
}
}
}
if (errors.length() > 0) {
return errors.toString();
}
return null;
}
Also used :
AddTestCriteriaOPBioModel(cbit.vcell.numericstest.AddTestCriteriaOPBioModel)
AddTestCasesOPBioModel(cbit.vcell.numericstest.AddTestCasesOPBioModel)
ArrayList(java.util.ArrayList)
TestCriteriaNewMathModel(cbit.vcell.numericstest.TestCriteriaNewMathModel)
GeometryContext(cbit.vcell.mapping.GeometryContext)
HashSet(java.util.HashSet)
TestSuiteNew(cbit.vcell.numericstest.TestSuiteNew)
TestCaseNew(cbit.vcell.numericstest.TestCaseNew)
GeometricRegion(cbit.vcell.geometry.surface.GeometricRegion)
AddTestCriteriaOPMathModel(cbit.vcell.numericstest.AddTestCriteriaOPMathModel)
MathMapping(cbit.vcell.mapping.MathMapping)
MathModel(cbit.vcell.mathmodel.MathModel)
AddTestCasesOPMathModel(cbit.vcell.numericstest.AddTestCasesOPMathModel)
TestCaseNewMathModel(cbit.vcell.numericstest.TestCaseNewMathModel)
TestCriteriaNewMathModel(cbit.vcell.numericstest.TestCriteriaNewMathModel)
EditTestCriteriaOPMathModel(cbit.vcell.numericstest.EditTestCriteriaOPMathModel)
AddTestCriteriaOPMathModel(cbit.vcell.numericstest.AddTestCriteriaOPMathModel)
KeyValue(org.vcell.util.document.KeyValue)
GeometrySurfaceDescription(cbit.vcell.geometry.surface.GeometrySurfaceDescription)
TestCriteriaNewBioModel(cbit.vcell.numericstest.TestCriteriaNewBioModel)
AddTestCasesOP(cbit.vcell.numericstest.AddTestCasesOP)
TestCaseNewBioModel(cbit.vcell.numericstest.TestCaseNewBioModel)
AddTestCasesOPMathModel(cbit.vcell.numericstest.AddTestCasesOPMathModel)
Membrane(cbit.vcell.model.Membrane)
Structure(cbit.vcell.model.Structure)
SimulationContext(cbit.vcell.mapping.SimulationContext)
ObjectNotFoundException(org.vcell.util.ObjectNotFoundException)
DataAccessException(org.vcell.util.DataAccessException)
UserCancelException(org.vcell.util.UserCancelException)
BigDecimal(java.math.BigDecimal)
Simulation(cbit.vcell.solver.Simulation)
MembraneVoltage(cbit.vcell.model.Membrane.MembraneVoltage)
TestCaseNewBioModel(cbit.vcell.numericstest.TestCaseNewBioModel)
TestCriteriaNewBioModel(cbit.vcell.numericstest.TestCriteriaNewBioModel)
AddTestCasesOPBioModel(cbit.vcell.numericstest.AddTestCasesOPBioModel)
BioModel(cbit.vcell.biomodel.BioModel)
EditTestCriteriaOPBioModel(cbit.vcell.numericstest.EditTestCriteriaOPBioModel)
AddTestCriteriaOPBioModel(cbit.vcell.numericstest.AddTestCriteriaOPBioModel)
TestCaseNewMathModel(cbit.vcell.numericstest.TestCaseNewMathModel)
Example 2 with TestCaseNewBioModel
use of cbit.vcell.numericstest.TestCaseNewBioModel in project vcell by virtualcell.
the class TestingFrameworkWindowManager method duplicateTestSuite.
/**
* Insert the method's description here.
* Creation date: (4/10/2003 11:27:32 AM)
* @param testCase cbit.vcell.numericstestingframework.TestCase
*/
public String duplicateTestSuite(final TestSuiteInfoNew testSuiteInfo_Original, final TestSuiteInfoNew newTestSuiteInfo, int regrRefFlag, ClientTaskStatusSupport pp) throws DataAccessException {
if (testSuiteInfo_Original == null || newTestSuiteInfo == null) {
throw new IllegalArgumentException(this.getClass().getName() + "duplicateTestSuite_Private: TestSuite cannot be null");
}
checkNewTestSuiteInfo(newTestSuiteInfo);
TestSuiteNew testSuite_Original = getRequestManager().getDocumentManager().getTestSuite(testSuiteInfo_Original.getTSKey());
if (testSuite_Original == null) {
throw new DataAccessException("Couldn't get TestSuite for tsInfo " + testSuiteInfo_Original.getTSID());
}
AddTestSuiteOP testSuiteOP = new AddTestSuiteOP(newTestSuiteInfo.getTSID(), newTestSuiteInfo.getTSVCellBuild(), newTestSuiteInfo.getTSNumericsBuild(), null, newTestSuiteInfo.getTSAnnotation());
getRequestManager().getDocumentManager().doTestSuiteOP(testSuiteOP);
TestSuiteInfoNew[] tsinArr = getRequestManager().getDocumentManager().getTestSuiteInfos();
TestSuiteInfoNew tsin = null;
for (int i = 0; i < tsinArr.length; i += 1) {
if (tsinArr[i].getTSID().equals(newTestSuiteInfo.getTSID())) {
tsin = tsinArr[i];
break;
}
}
if (tsin == null) {
throw new DataAccessException("couldn't find new TestSuiteInfo " + newTestSuiteInfo.getTSID() + " in DB");
}
TestCaseNew[] originalTestCases = testSuite_Original.getTestCases();
TestCaseNew[] newTestCases = null;
if (originalTestCases != null && originalTestCases.length > 0) {
newTestCases = new TestCaseNew[originalTestCases.length];
for (int i = 0; i < originalTestCases.length; i += 1) {
if (originalTestCases[i] instanceof TestCaseNewMathModel) {
TestCaseNewMathModel tcnmm = (TestCaseNewMathModel) originalTestCases[i];
TestCriteriaNew[] tcritnmm = (TestCriteriaNew[]) tcnmm.getTestCriterias();
TestCriteriaNewMathModel[] newTCrits = null;
if (tcritnmm != null && tcritnmm.length > 0) {
// Copy regression and errors
newTCrits = new TestCriteriaNewMathModel[tcritnmm.length];
for (int j = 0; j < tcritnmm.length; j += 1) {
newTCrits[j] = new TestCriteriaNewMathModel(null, tcritnmm[j].getSimInfo(), ((TestCriteriaNewMathModel) tcritnmm[j]).getRegressionMathModelInfo(), tcritnmm[j].getRegressionSimInfo(), tcritnmm[j].getMaxRelError(), tcritnmm[j].getMaxAbsError(), null, // new will have no data
TestCriteriaNew.TCRIT_STATUS_NODATA, // new will have no data
null);
}
}
// copy mathmodel,type and annotation and copied tcrits
newTestCases[i] = new TestCaseNewMathModel(null, tcnmm.getMathModelInfo(), tcnmm.getType(), tcnmm.getAnnotation(), newTCrits);
} else if (originalTestCases[i] instanceof TestCaseNewBioModel) {
TestCaseNewBioModel tcnbm = (TestCaseNewBioModel) originalTestCases[i];
TestCriteriaNew[] tcritnbm = (TestCriteriaNew[]) tcnbm.getTestCriterias();
TestCriteriaNewBioModel[] newTCrits = null;
if (tcritnbm != null && tcritnbm.length > 0) {
// Copy regression and errors
newTCrits = new TestCriteriaNewBioModel[tcritnbm.length];
for (int j = 0; j < tcritnbm.length; j += 1) {
newTCrits[j] = new TestCriteriaNewBioModel(null, tcritnbm[j].getSimInfo(), ((TestCriteriaNewBioModel) tcritnbm[j]).getRegressionBioModelInfo(), ((TestCriteriaNewBioModel) tcritnbm[j]).getRegressionApplicationName(), tcritnbm[j].getRegressionSimInfo(), tcritnbm[j].getMaxRelError(), tcritnbm[j].getMaxAbsError(), null, // new will have no data
TestCriteriaNew.TCRIT_STATUS_NODATA, // new will have no data
null);
}
}
// copy mathmodel,type and annotation and copied tcrits
newTestCases[i] = new TestCaseNewBioModel(null, tcnbm.getBioModelInfo(), tcnbm.getSimContextName(), tcnbm.getSimContextKey(), tcnbm.getType(), tcnbm.getAnnotation(), newTCrits);
} else {
throw new RuntimeException("Unsupported TestCase type " + originalTestCases[i].getClass().getName());
}
}
}
// Add the new TestCases
if (newTestCases != null && newTestCases.length > 0) {
return addTestCases(tsin, newTestCases, regrRefFlag, pp);
} else {
return null;
}
}
Also used :
TestSuiteNew(cbit.vcell.numericstest.TestSuiteNew)
TestCriteriaNewBioModel(cbit.vcell.numericstest.TestCriteriaNewBioModel)
TestCaseNew(cbit.vcell.numericstest.TestCaseNew)
TestCaseNewBioModel(cbit.vcell.numericstest.TestCaseNewBioModel)
AddTestSuiteOP(cbit.vcell.numericstest.AddTestSuiteOP)
TestCriteriaNewMathModel(cbit.vcell.numericstest.TestCriteriaNewMathModel)
TestCriteriaNew(cbit.vcell.numericstest.TestCriteriaNew)
TestCaseNewMathModel(cbit.vcell.numericstest.TestCaseNewMathModel)
TestSuiteInfoNew(cbit.vcell.numericstest.TestSuiteInfoNew)
DataAccessException(org.vcell.util.DataAccessException)
Example 3 with TestCaseNewBioModel
use of cbit.vcell.numericstest.TestCaseNewBioModel in project vcell by virtualcell.
the class TestCaseAddPanel method applyTestCaseInfo.
/**
* Comment
*/
private void applyTestCaseInfo() throws Exception {
fieldNewTestCaseArr = null;
if (getMathModelInfo() == null && getbioModelInfo() == null) {
throw new Exception("Nothing selected, choose either a MathModel or a BioModel/App combination before setting TestCaseInfo");
// return;
}
if (getMathModelInfo() != null && getbioModelInfo() != null) {
throw new Exception("must choose either a MathModel or a BioModel/App combination (BUT NOT BOTH)");
// return;
}
// testcaseinfo TYPE
String type = null;
if (getExactRadioButton().isSelected()) {
type = TestCaseNew.EXACT;
} else if (getIvjExactRadioButtonSteady().isSelected()) {
type = TestCaseNew.EXACT_STEADY;
} else if (getConstructedRadioButton().isSelected()) {
type = TestCaseNew.CONSTRUCTED;
} else if (getRegressionRadioButton().isSelected()) {
type = TestCaseNew.REGRESSION;
} else {
throw new Exception("Solution Type Not Chosen");
}
String annotation = null;
annotation = getAnnotationTextArea().getText();
if (getMathModelInfo() != null) {
//
// math model selected
//
TestCaseNewMathModel mathTestCase = new TestCaseNewMathModel(null, getMathModelInfo(), type, annotation, null);
setNewTestCaseArr(new TestCaseNewMathModel[] { mathTestCase });
} else {
//
if (getappNameArr() == null) {
throw new Exception("no application(s) selected");
}
if (!type.equals(TestCaseNew.REGRESSION)) {
throw new Exception("BioModel/App test case must be of type 'REGRESSION'");
}
org.vcell.util.document.KeyValue[] appKeyArr = null;
try {
for (int i = 0; i < getappNameArr().length; i++) {
if (appKeyArr == null) {
appKeyArr = new KeyValue[getappNameArr().length];
}
appKeyArr[i] = getTestingFrameworkWindowManager().getSimContextKey(getbioModelInfo(), getappNameArr()[i]);
}
} catch (org.vcell.util.DataAccessException e) {
e.printStackTrace(System.out);
throw new Exception("Exception while retrieving BioModel SimContextKey");
}
if (appKeyArr == null) {
throw new Exception("BioModel/App test case cannot be created, selected application(s), not found in BioModel");
}
TestCaseNewBioModel[] bioTestCaseArr = new TestCaseNewBioModel[appKeyArr.length];
for (int i = 0; i < bioTestCaseArr.length; i++) {
bioTestCaseArr[i] = new TestCaseNewBioModel(null, getbioModelInfo(), getappNameArr()[i], appKeyArr[i], type, annotation, null);
}
setNewTestCaseArr(bioTestCaseArr);
}
}
Also used :
KeyValue(org.vcell.util.document.KeyValue)
TestCaseNewMathModel(cbit.vcell.numericstest.TestCaseNewMathModel)
TestCaseNewBioModel(cbit.vcell.numericstest.TestCaseNewBioModel)
UserCancelException(org.vcell.util.UserCancelException)
Example 4 with TestCaseNewBioModel
use of cbit.vcell.numericstest.TestCaseNewBioModel in project vcell by virtualcell.
the class TestingFrameworkWindowPanel method testingFrameworkPanel_actionPerformed.
/**
* Comment
*/
private void testingFrameworkPanel_actionPerformed(final ActionEvent e) {
if (tfRefreshTreeTask == null) {
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager());
}
Hashtable<String, Object> hash = new Hashtable<String, Object>();
Vector<AsynchClientTask> tasksV = new Vector<AsynchClientTask>();
try {
final TreePath[] selectedTreePaths = gettestingFrameworkPanel().getSelectedTreePaths();
if (selectedTreePaths != null && selectedTreePaths.length > 1) {
Object refObj = ((BioModelNode) selectedTreePaths[0].getLastPathComponent()).getUserObject();
for (int i = 1; i < selectedTreePaths.length; i++) {
Object currentObj = ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
if ((refObj == null && currentObj == null) || ((refObj != null && currentObj != null) && (refObj.getClass().equals(currentObj.getClass()))) || (refObj instanceof TestCaseNew && currentObj instanceof TestCaseNew)) {
continue;
} else {
throw new IllegalArgumentException("Multiple selections must all be of same type");
}
}
}
final Object selectedObj = gettestingFrameworkPanel().getTreeSelection();
if (e.getActionCommand().equals(TestingFrameworkPanel.DELETE_XML_LOAD_TEST)) {
int result = DialogUtils.showComponentOKCancelDialog(this, new JLabel("Delete " + selectedTreePaths.length + " Load Tests?"), "Confirm Load Test Delete");
if (result != JOptionPane.OK_OPTION) {
return;
}
AsynchClientTask deleteLoadTestTask = new AsynchClientTask("Deleting Load Test...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
@Override
public void run(Hashtable<String, Object> hashTable) throws Exception {
LoadTestInfoOP deleteLoadTestInfoOP = new LoadTestInfoOP(LoadTestOpFlag.delete, null, null);
LoadTestSoftwareVersionTimeStamp[] deleteTheseversTimestamps = new LoadTestSoftwareVersionTimeStamp[selectedTreePaths.length];
for (int i = 0; i < selectedTreePaths.length; i++) {
deleteTheseversTimestamps[i] = ((LoadTestTreeInfo) ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject()).loadTestSoftwareVersionTimeStamp;
}
deleteLoadTestInfoOP.setDeleteInfo(deleteTheseversTimestamps);
getTestingFrameworkWindowManager().getRequestManager().getDocumentManager().doTestSuiteOP(deleteLoadTestInfoOP);
final ActionEvent refreshAction = new ActionEvent(this, 0, TestingFrameworkPanel.REFRESH_XML_LOAD_TEST);
new Thread(new Runnable() {
public void run() {
testingFrameworkPanel_actionPerformed(refreshAction);
}
}).start();
}
};
tasksV.add(deleteLoadTestTask);
} else if (e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_All) || e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_MODELS) || e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_USERS)) {
final Date[] beginDate = new Date[1];
final Date[] endDate = new Date[1];
final TreeSet<String> uniqueUserIDTreeSet = new TreeSet<String>();
final Vector<KeyValue> bioAndMathModelKeyValueV = new Vector<KeyValue>();
String typeMsg = "All";
if (!e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_All)) {
if (selectedTreePaths != null && selectedTreePaths.length > 0) {
Object refObj = ((BioModelNode) selectedTreePaths[0].getLastPathComponent()).getUserObject();
if (refObj instanceof TestingFrmwkTreeModel.LoadTestTreeInfo) {
for (int i = 0; i < selectedTreePaths.length; i++) {
refObj = ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
uniqueUserIDTreeSet.add(((TestingFrmwkTreeModel.LoadTestTreeInfo) refObj).userid);
if (!e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_USERS)) {
bioAndMathModelKeyValueV.add(((TestingFrmwkTreeModel.LoadTestTreeInfo) refObj).bioOrMathModelKey);
}
}
}
}
} else {
// TreeSet<VCDocumentInfo> dateRangeDocInfoTreeSet =
// new TreeSet<VCDocumentInfo>(new Comparator<VCDocumentInfo>() {
// public int compare(VCDocumentInfo o1, VCDocumentInfo o2) {
// return o1.getVersion().getDate().compareTo(o2.getVersion().getDate());
// }
// });
// BioModelInfo[] allBioModelInfos = getDocumentManager().getBioModelInfos();
// dateRangeDocInfoTreeSet.addAll(Arrays.asList(allBioModelInfos));
// MathModelInfo[] allMathModelInfos = getDocumentManager().getMathModelInfos();
// dateRangeDocInfoTreeSet.addAll(Arrays.asList(allMathModelInfos));
SimpleDateFormat simpleDateFormat = new SimpleDateFormat("yyyy-MM-dd");
// Date firstDate = simpleDateFormat.parse(simpleDateFormat.format(dateRangeDocInfoTreeSet.first().getVersion().getDate()));
// Date lastDate = simpleDateFormat.parse(simpleDateFormat.format(dateRangeDocInfoTreeSet.last().getVersion().getDate()));
Date firstDate = simpleDateFormat.parse("2000-01-01");
Date lastDate = simpleDateFormat.parse(simpleDateFormat.format(Calendar.getInstance().getTime()));
String allDateRangeString = simpleDateFormat.format(firstDate) + "," + simpleDateFormat.format(lastDate);
while (beginDate[0] == null || endDate[0] == null) {
try {
String dateRangeString = DialogUtils.showInputDialog0(this, "Enter Date Range (begin,end) to include (e.g. '" + allDateRangeString + "')", allDateRangeString);
beginDate[0] = simpleDateFormat.parse(dateRangeString.substring(0, dateRangeString.indexOf(",")));
endDate[0] = simpleDateFormat.parse(dateRangeString.substring(dateRangeString.indexOf(",") + 1));
// if(beginDate.compareTo(firstDate) != 0 ||
// endDate.compareTo(lastDate) != 0){
// Iterator<VCDocumentInfo> vcDocIter = dateRangeDocInfoTreeSet.iterator();
// while(vcDocIter.hasNext()){
// VCDocumentInfo vcDocInfo = vcDocIter.next();
// Date docDate = simpleDateFormat.parse(simpleDateFormat.format(vcDocInfo.getVersion().getDate()));
// if(docDate.compareTo(beginDate) < 0 ||
// docDate.compareTo(endDate) > 0){
// continue;
// }
// uniqueUserIDTreeSet.add(vcDocInfo.getVersion().getOwner().getName());
// bioAndMathModelKeyValueV.add(vcDocInfo.getVersion().getVersionKey());
// }
// }
} catch (UtilCancelException uce) {
return;
} catch (Exception e2) {
DialogUtils.showErrorDialog(this, e2.getMessage());
}
}
if (beginDate[0].compareTo(firstDate) == 0 && endDate[0].compareTo(lastDate) == 0) {
beginDate[0] = null;
endDate[0] = null;
} else {
typeMsg = "between " + simpleDateFormat.format(beginDate[0]) + "," + simpleDateFormat.format(endDate[0]);
}
}
if (e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_MODELS)) {
typeMsg = "Models (" + bioAndMathModelKeyValueV.size() + ")";
} else if (e.getActionCommand().equals(TestingFrameworkPanel.RUN_XML_LOAD_TEST_USERS)) {
typeMsg = "Users (" + uniqueUserIDTreeSet.size() + ")";
}
int result = DialogUtils.showComponentOKCancelDialog(TestingFrameworkWindowPanel.this, new JLabel("Run " + typeMsg + " Load Tests?"), "Confirm Load Test Run");
if (result != JOptionPane.OK_OPTION) {
return;
}
result = DialogUtils.showComponentOKCancelDialog(this, enterDBAndSoftwareVersPanel, "Enter Software Version running load test");
if (result != JOptionPane.OK_OPTION) {
return;
}
AsynchClientTask runXMLLoadTestTask = new AsynchClientTask("Running XML Load Test...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
@Override
public void run(Hashtable<String, Object> hashTable) throws Exception {
String[] uniqueUserIDArr = null;
KeyValue[] bioAndMathModelKeyValueArr = null;
if (beginDate[0] != null && endDate[0] != null) {
LoadTestInfoOpResults loadTestInfoOpResults = getTestingFrameworkWindowManager().getLoadTestInfoBetweenDates(beginDate[0], endDate[0]);
uniqueUserIDArr = loadTestInfoOpResults.getUniqueUserIDsBetweenDates();
bioAndMathModelKeyValueArr = loadTestInfoOpResults.getKeyValuesBetweenDates();
} else {
uniqueUserIDArr = (uniqueUserIDTreeSet.size() == 0 ? null : uniqueUserIDTreeSet.toArray(new String[0]));
bioAndMathModelKeyValueArr = (bioAndMathModelKeyValueV.size() == 0 ? null : bioAndMathModelKeyValueV.toArray(new KeyValue[0]));
}
throw new RuntimeException(TestingFrameworkWindowPanel.class.getSimpleName() + ".runXMLLoadTestTask(): Run Load Test disabled, directly dependend on MathVerifier.runLoadTest(), should move to standalone admin tool.");
// MathVerifier mathVerifier = MathVerifier.createMathVerifier(
// enterDBAndSoftwareVersPanel.getDBHost(),
// enterDBAndSoftwareVersPanel.getDBName(),
// enterDBAndSoftwareVersPanel.getDBSchema(),
// enterDBAndSoftwareVersPanel.getDBPassword());
// mathVerifier.runLoadTest(
// uniqueUserIDArr,
// bioAndMathModelKeyValueArr,
// enterDBAndSoftwareVersPanel.getSoftwareVersion(),
// (enterDBAndSoftwareVersPanel.getSoftwareVersion().length()==0?false:true),
// (enterDBAndSoftwareVersPanel.getSoftwareVersion().length()==0?Compare.DEFAULT_COMPARE_LOGGER:null));
}
};
tasksV.add(runXMLLoadTestTask);
} else if (e.getActionCommand().equals(TestingFrameworkPanel.REFRESH_XML_LOAD_TEST)) /*||
e.getActionCommand().equals(TestingFrameworkPanel.REFRESH_INCLUDE_SLOW_XML_LOAD_TEST)*/
{
final String LOADTESTDETAILS_KEY = "LOADTESTDETAILS_KEY";
AsynchClientTask getFailedLoadTest = new AsynchClientTask("Getting FailedLoadTests...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
@Override
public void run(Hashtable<String, Object> hashTable) throws Exception {
/* Integer slowLoadThreshold = null;
if(e.getActionCommand().equals(TestingFrameworkPanel.REFRESH_INCLUDE_SLOW_XML_LOAD_TEST)){
String result = DialogUtils.showInputDialog0(TestingFrameworkWindowPanel.this, "Enter load time threshold (millseconds)","10000");
slowLoadThreshold = new Integer(result);
}
*/
if (gettestingFrameworkPanel().getSlowLoadThreshold() != null && gettestingFrameworkPanel().getLoadTestSQLCondition() != null) {
throw new IllegalArgumentException("SlowLoadThreshold and 'SQL Condition' cannot both be non-null at the same time.");
}
hashTable.put(LOADTESTDETAILS_KEY, getTestingFrameworkWindowManager().getLoadTestDetails(gettestingFrameworkPanel().getSlowLoadThreshold(), gettestingFrameworkPanel().getLoadTestSQLCondition()));
}
};
AsynchClientTask refreshFailedLoadTest = new AsynchClientTask("Refreshing FailedLoadTests...", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {
@Override
public void run(Hashtable<String, Object> hashTable) throws Exception {
getTestingFrameworkWindowManager().refreshLoadTest((LoadTestInfoOpResults) hashTable.get(LOADTESTDETAILS_KEY));
}
};
tasksV.add(getFailedLoadTest);
tasksV.add(refreshFailedLoadTest);
} else if (e.getActionCommand().equals(TestingFrameworkPanel.QUERY_TCRITVAR_CROSSREF)) {
if (selectedObj instanceof TestingFrmwkTreeModel.TestCriteriaVarUserObj && selectedTreePaths.length == 1) {
final TestingFrmwkTreeModel.TestCriteriaVarUserObj tcritVaruserObj = (TestingFrmwkTreeModel.TestCriteriaVarUserObj) selectedObj;
final TestSuiteInfoNew tsInfoNew = gettestingFrameworkPanel().getTestSuiteInfoOfTreePath(selectedTreePaths[0]);
AsynchClientTask queryTCritCrossRef = new AsynchClientTask("Query TCrit Var Cross Ref", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
public void run(Hashtable<String, Object> hashTable) throws Exception {
getTestingFrameworkWindowManager().queryTCritCrossRef(tsInfoNew, tcritVaruserObj.getTestCriteria(), tcritVaruserObj.getVariableComparisonSummary().getName());
}
};
tasksV.add(queryTCritCrossRef);
} else {
throw new Exception("Selected Object is not a TestCriteria Variable! Failed to Query Var Cross Ref.");
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.QUERY_TCRIT_CROSSREF)) {
if (selectedObj instanceof TestCriteriaNew) {
final TestCriteriaNew tcritNew = (TestCriteriaNew) selectedObj;
final TestSuiteInfoNew tsInfoNew = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCriteria();
AsynchClientTask queryTCritCrossRef = new AsynchClientTask("Query TCrit Cross Ref", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
public void run(Hashtable<String, Object> hashTable) throws Exception {
getTestingFrameworkWindowManager().queryTCritCrossRef(tsInfoNew, tcritNew, null);
}
};
tasksV.add(queryTCritCrossRef);
} else {
throw new Exception("Selected Object is not a TestCriteria! Failed to Query Cross Ref.");
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.LOCK_TESTSUITE)) {
if (selectedObj instanceof TestSuiteInfoNew) {
final TestSuiteInfoNew tsInfoNew = (TestSuiteInfoNew) selectedObj;
AsynchClientTask lockTestSuiteTask = new AsynchClientTask("Lock TestSuite", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
public void run(Hashtable<String, Object> hashTable) throws Exception {
getTestingFrameworkWindowManager().lockTestSuite(tsInfoNew);
}
};
tasksV.add(lockTestSuiteTask);
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfoNew);
tasksV.add(tfRefreshTreeTask);
} else {
throw new Exception("Selected Object is not a TestSuite! Failed to Lock TestSuite.");
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.EDIT_ANNOT_TESTSUITE)) {
if (selectedObj instanceof TestSuiteInfoNew) {
final TestSuiteInfoNew tsInfoNew = (TestSuiteInfoNew) selectedObj;
String newAnnotation;
// initialize fields
String oldAnnotation = tsInfoNew.getTSAnnotation();
// show the editor
newAnnotation = org.vcell.util.gui.DialogUtils.showAnnotationDialog(this, oldAnnotation);
final String finalAnnotation = newAnnotation;
AsynchClientTask editTestSuiteAnnotation = new AsynchClientTask("Edit TestSuite Annotation", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
public void run(Hashtable<String, Object> hashTable) throws Exception {
getTestingFrameworkWindowManager().updateTestSuiteAnnotation(tsInfoNew, finalAnnotation);
}
};
tasksV.add(editTestSuiteAnnotation);
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfoNew);
tasksV.add(tfRefreshTreeTask);
} else {
throw new Exception("Selected Object is not a TestSuite! Failed to Edit TestSuite Annotation.");
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.EDIT_ANNOT_TESTCASE)) {
if (selectedObj instanceof TestCaseNew) {
final TestCaseNew tcNew = (TestCaseNew) selectedObj;
String newAnnotation;
// initialize fields
String oldAnnotation = tcNew.getAnnotation();
// show the editor
newAnnotation = org.vcell.util.gui.DialogUtils.showAnnotationDialog(this, oldAnnotation);
final String finalAnnotation = newAnnotation;
AsynchClientTask editTestCaseAnnotation = new AsynchClientTask("Edit TestCase Annotation", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
public void run(Hashtable<String, Object> hashTable) throws Exception {
getTestingFrameworkWindowManager().updateTestCaseAnnotation(tcNew, finalAnnotation);
}
};
tasksV.add(editTestCaseAnnotation);
TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCase();
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
tasksV.add(tfRefreshTreeTask);
} else {
throw new Exception("Selected Object is not a TestCase! Failed to Edit TestCase Annotation.");
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.TOGGLE_STEADYSTATE)) {
if (selectedObj instanceof TestCaseNew) {
final TestCaseNew testCase = (TestCaseNew) selectedObj;
String okString = "Ok";
String confirm = PopupGenerator.showWarningDialog(this, "Toggle TestCase '" + testCase.getVersion().getName() + "'\nfrom " + testCase.getType() + " to " + (testCase.getType().equals(TestCaseNew.EXACT) ? TestCaseNew.EXACT_STEADY : TestCaseNew.EXACT), new String[] { okString, "Cancel" }, okString);
if (confirm.equals(okString)) {
AsynchClientTask toggleSteadyState = new AsynchClientTask("Toggle Steady State", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
public void run(Hashtable<String, Object> hashTable) throws Exception {
getTestingFrameworkWindowManager().toggleTestCaseSteadyState(new TestCaseNew[] { testCase });
}
};
tasksV.add(toggleSteadyState);
TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCase();
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
tasksV.add(tfRefreshTreeTask);
} else {
throw UserCancelException.CANCEL_GENERIC;
}
} else {
throw new Exception("Selected Object is not a TestCase! Cannot Toggle SteadyState");
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.ADD_TESTSUITE)) {
TestingFrameworkWindowManager.NewTestSuiteUserInformation newTestSuiteUserInfo = getTestingFrameworkWindowManager().getNewTestSuiteInfoFromUser(null, null);
tasksV.add(new TFAddTestSuite(getTestingFrameworkWindowManager(), newTestSuiteUserInfo.testSuiteInfoNew));
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), newTestSuiteUserInfo.testSuiteInfoNew);
tasksV.add(tfRefreshTreeTask);
} else if (e.getActionCommand().equals(TestingFrameworkPanel.REFRESH_TESTSUITE)) {
TestSuiteInfoNew tsin = null;
if (selectedObj instanceof TestSuiteInfoNew) {
tsin = (TestSuiteInfoNew) selectedObj;
} else if (selectedObj instanceof TestCaseNew) {
tsin = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCase();
} else if (selectedObj instanceof TestCriteriaNew) {
tsin = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCriteria();
}
if (tsin == null) {
throw new IllegalArgumentException("Refresh error: Unexpected tree selection type=" + selectedObj.getClass().getName());
}
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsin);
tasksV.add(new TFUpdateRunningStatus(getTestingFrameworkWindowManager(), tsin));
tasksV.add(tfRefreshTreeTask);
// getTestingFrameworkWindowManager().updateSimRunningStatus();
} else if (e.getActionCommand().equals(TestingFrameworkPanel.ADD_TESTCASE)) {
if (selectedObj instanceof TestSuiteInfoNew) {
TestSuiteInfoNew tsInfo = (TestSuiteInfoNew) selectedObj;
TestCaseNew[] tcnArr = getTestingFrameworkWindowManager().getNewTestCaseArr();
tasksV.add(new cbit.vcell.client.task.TFAddTestCases(getTestingFrameworkWindowManager(), tsInfo, tcnArr));
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
tasksV.add(tfRefreshTreeTask);
} else {
throw new Exception("Selected Object is not a test suite! Cannot add a test case");
}
} else if (e.getActionCommand().equals("Run All")) {
if (selectedTreePaths == null || selectedTreePaths.length != 1) {
throw new IllegalArgumentException("Command '" + e.getActionCommand() + "' Single Selection Only!");
}
if (selectedObj instanceof TestSuiteInfoNew) {
TestSuiteInfoNew tsInfo = (TestSuiteInfoNew) selectedObj;
String okString = "Ok";
String confirm = PopupGenerator.showWarningDialog(this, "Run All Sims for TestSuite '" + tsInfo.getTSID() + "'?", new String[] { okString, "Cancel" }, okString);
if (confirm.equals(okString)) {
tasksV.add(new TFRunSims(getTestingFrameworkWindowManager(), tsInfo));
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
tasksV.add(tfRefreshTreeTask);
}
} else {
throw new Exception("Selected Object is not a test suite!");
}
} else if (e.getActionCommand().equals("Run Simulations")) {
if (selectedTreePaths == null || selectedTreePaths.length != 1) {
throw new IllegalArgumentException("Command '" + e.getActionCommand() + "' Single Selection Only!");
}
if (selectedObj instanceof TestCaseNew) {
TestCaseNew testCase = (TestCaseNew) selectedObj;
String okString = "Ok";
String confirm = PopupGenerator.showWarningDialog(this, "Run All Sims for TestCase '" + testCase.getVersion().getName() + "'?", new String[] { okString, "Cancel" }, okString);
if (confirm.equals(okString)) {
tasksV.add(new TFRunSims(getTestingFrameworkWindowManager(), testCase));
TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCase();
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
tasksV.add(tfRefreshTreeTask);
}
} else {
throw new Exception("Selected Object is not a TestCase! Cannot run simulations");
}
} else if (e.getActionCommand().equals("Run")) {
if (selectedTreePaths != null && selectedTreePaths.length > 0 && selectedTreePaths[0].getLastPathComponent() instanceof BioModelNode && ((BioModelNode) selectedTreePaths[0].getLastPathComponent()).getUserObject() instanceof TestCriteriaNew) {
for (int i = 0; i < selectedTreePaths.length; i += 1) {
TestCriteriaNew tCriteria = (TestCriteriaNew) ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
tasksV.add(new TFRunSims(getTestingFrameworkWindowManager(), tCriteria));
}
TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCriteria();
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
tasksV.add(tfRefreshTreeTask);
} else {
throw new Exception("Selected Object is not a TestCriteria!");
}
} else if (e.getActionCommand().equals("View Results")) {
if (selectedObj instanceof cbit.vcell.numericstest.TestCriteriaNew) {
TestCriteriaNew tCriteria = (TestCriteriaNew) selectedObj;
getTestingFrameworkWindowManager().viewResults(tCriteria);
} else {
PopupGenerator.showErrorDialog(TestingFrameworkWindowPanel.this, "Selected Object is not a TestCriteria!");
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.COMPARERREGR_INTERNALREF_TESTCRITERIA) || e.getActionCommand().equals(TestingFrameworkPanel.COMPARERREGR_USERDEFREF_TESTCRITERIA)) {
if (selectedObj instanceof cbit.vcell.numericstest.TestCriteriaNew) {
TestCriteriaNew tCriteria = (TestCriteriaNew) selectedObj;
SimulationStatus simStatus = getTestingFrameworkWindowManager().getRequestManager().getServerSimulationStatus(tCriteria.getSimInfo());
if (simStatus.isRunning()) {
PopupGenerator.showErrorDialog(TestingFrameworkWindowPanel.this, "Selected simulation is still running!");
return;
}
SimulationInfo simulationInfo = tCriteria.getRegressionSimInfo();
if (e.getActionCommand().equals(TestingFrameworkPanel.COMPARERREGR_USERDEFREF_TESTCRITERIA)) {
try {
simulationInfo = getUserSelectedSimulationInfo().getSimInfo();
} catch (UserCancelException e2) {
return;
}
}
if (simulationInfo == null) {
PopupGenerator.showErrorDialog(TestingFrameworkWindowPanel.this, "Either the selected simulation does not belong to a REGRESSION test or the regression simInfo is not set!");
return;
}
getTestingFrameworkWindowManager().compare(tCriteria, simulationInfo);
} else {
PopupGenerator.showErrorDialog(TestingFrameworkWindowPanel.this, "Selected Object is not a TestCriteria!");
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.DUPLICATE_TESTSUITE)) {
if (selectedObj instanceof TestSuiteInfoNew) {
TestSuiteInfoNew tsInfoOriginal = (TestSuiteInfoNew) selectedObj;
TestingFrameworkWindowManager.NewTestSuiteUserInformation newTestSuiteUserInfo = getTestingFrameworkWindowManager().getNewTestSuiteInfoFromUser(tsInfoOriginal.getTSAnnotation(), tsInfoOriginal.getTSID());
tasksV.add(new TFDuplicateTestSuite(getTestingFrameworkWindowManager(), tsInfoOriginal, newTestSuiteUserInfo.testSuiteInfoNew, newTestSuiteUserInfo.regrRefFlag));
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), newTestSuiteUserInfo.testSuiteInfoNew);
tasksV.add(tfRefreshTreeTask);
// getTestingFrameworkWindowManager().duplicateTestSuite(tsInfo);
} else {
throw new Exception("Selected Object is not a test suite! Cannot duplicate");
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.REMOVE_TESTCASE)) {
if (selectedObj instanceof TestCaseNew) {
String[][] rowData = new String[selectedTreePaths.length][3];
TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCase();
for (int i = 0; i < selectedTreePaths.length; i += 1) {
TestCaseNew tCase = (TestCaseNew) ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
rowData[i][0] = tsInfo.getTSID();
tasksV.add(new TFRemove(getTestingFrameworkWindowManager(), tCase));
if (tCase instanceof TestCaseNewBioModel) {
rowData[i][1] = "BM " + tCase.getVersion().getName();
rowData[i][2] = ((TestCaseNewBioModel) tCase).getSimContextName();
} else {
rowData[i][1] = "MM " + tCase.getVersion().getName();
rowData[i][2] = "N/A";
}
}
DialogUtils.showComponentOKCancelTableList(this, "Confirm Remove TestCase(s)", new String[] { "Test Suite", "Test Case", "App" }, rowData, null);
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
tasksV.add(tfRefreshTreeTask);
} else {
throw new Exception("Selected Object is not a TestCase, cannot remove selection!");
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.REMOVE_TESTSUITE)) {
if (selectedObj instanceof TestSuiteInfoNew) {
TestSuiteInfoNew tsInfo = (TestSuiteInfoNew) selectedObj;
String confirm = PopupGenerator.showWarningDialog(this, UserMessage.warn_deleteDocument.getMessage(tsInfo.getTSID()), UserMessage.warn_deleteDocument.getOptions(), UserMessage.warn_deleteDocument.getDefaultSelection());
if (confirm.equals(UserMessage.OPTION_DELETE)) {
tasksV.add(new TFRemove(getTestingFrameworkWindowManager(), tsInfo));
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
tasksV.add(tfRefreshTreeTask);
} else {
throw UserCancelException.CANCEL_GENERIC;
}
// getTestingFrameworkWindowManager().removeTestSuite(tsInfo);
} else {
throw new Exception("Selected Object is not a test suite! Cannot add a test case");
}
} else if (e.getActionCommand().equals("Generate TestSuite Report")) {
final TreePath[] selectedTreePathsLocal = selectedTreePaths;
new Thread(new Runnable() {
public void run() {
try {
for (int i = 0; selectedTreePathsLocal != null && i < selectedTreePathsLocal.length; i += 1) {
Object selTreeNode = ((BioModelNode) selectedTreePathsLocal[i].getLastPathComponent()).getUserObject();
if (selTreeNode instanceof TestSuiteInfoNew) {
Vector<AsynchClientTask> tasksVLocal = new java.util.Vector<AsynchClientTask>();
TestSuiteInfoNew tsInfo = (TestSuiteInfoNew) selTreeNode;
tasksVLocal.add(new cbit.vcell.client.task.TFUpdateRunningStatus(getTestingFrameworkWindowManager(), tsInfo));
tasksVLocal.add(new TFGenerateReport(getTestingFrameworkWindowManager(), tsInfo));
final String END_NOTIFIER = "END NOTIFIER";
tasksVLocal.add(new AsynchClientTask(END_NOTIFIER, AsynchClientTask.TASKTYPE_NONSWING_BLOCKING, false, false) {
public void run(Hashtable<String, Object> hashTable) throws Exception {
hashTable.put(END_NOTIFIER, END_NOTIFIER);
}
});
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
tasksVLocal.add(tfRefreshTreeTask);
AsynchClientTask[] tasksArr = new AsynchClientTask[tasksVLocal.size()];
tasksVLocal.copyInto(tasksArr);
Hashtable<String, Object> hashLocal = new Hashtable<String, Object>();
ClientTaskDispatcher.dispatch(TestingFrameworkWindowPanel.this, hashLocal, tasksArr, true);
// Wait for each report to complete before going on to next because report methods are not thread safe?
while (!hashLocal.contains(END_NOTIFIER)) {
Thread.sleep(100);
}
} else {
throw new Exception("Error GenerateTestSuiteReport\nSelected Object is not a TestSuite");
}
}
} catch (Exception e) {
e.printStackTrace();
PopupGenerator.showErrorDialog(TestingFrameworkWindowPanel.this, "Error GenerateTestSuiteReport\n" + e.getMessage(), e);
return;
}
}
}).start();
return;
} else if (e.getActionCommand().equals("Generate TestCase Report")) {
Vector<TestSuiteInfoNew> tsinV = new Vector<TestSuiteInfoNew>();
for (int i = 0; selectedTreePaths != null && i < selectedTreePaths.length; i += 1) {
Object selTreeNode = ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
if (selTreeNode instanceof TestCaseNew) {
TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfTreePath(selectedTreePaths[i]);
if (!tsinV.contains(tsInfo)) {
tsinV.add(tsInfo);
tasksV.add(new cbit.vcell.client.task.TFUpdateRunningStatus(getTestingFrameworkWindowManager(), tsInfo));
}
tasksV.add(new TFGenerateReport(getTestingFrameworkWindowManager(), (TestCaseNew) selTreeNode));
} else {
throw new Exception("Selected Object is not a TestCase");
}
}
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), (tsinV.size() == 1 ? tsinV.elementAt(0) : null));
tasksV.add(tfRefreshTreeTask);
} else if (e.getActionCommand().equals(TestingFrameworkPanel.GENTCRITREPORT_INTERNALREF_TESTCRITERIA) || e.getActionCommand().equals(TestingFrameworkPanel.GENTCRITREPORT_USERDEFREF_TESTCRITERIA)) {
TFGenerateReport.VCDocumentAndSimInfo userDefinedRegrRef = null;
if (e.getActionCommand().equals(TestingFrameworkPanel.GENTCRITREPORT_USERDEFREF_TESTCRITERIA)) {
try {
userDefinedRegrRef = getUserSelectedSimulationInfo();
} catch (UserCancelException e2) {
return;
}
}
Vector<TestSuiteInfoNew> tsinV = new Vector<TestSuiteInfoNew>();
for (int i = 0; selectedTreePaths != null && i < selectedTreePaths.length; i += 1) {
Object selTreeNode = ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
if (selTreeNode instanceof TestCriteriaNew) {
TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfTreePath(selectedTreePaths[i]);
if (!tsinV.contains(tsInfo)) {
tsinV.add(tsInfo);
tasksV.add(new cbit.vcell.client.task.TFUpdateRunningStatus(getTestingFrameworkWindowManager(), tsInfo));
}
tasksV.add(new TFGenerateReport(getTestingFrameworkWindowManager(), (TestCaseNew) ((BioModelNode) selectedTreePaths[i].getParentPath().getLastPathComponent()).getUserObject(), (TestCriteriaNew) selTreeNode, userDefinedRegrRef));
} else {
throw new Exception("Selected Object is not a TestCriteria");
}
}
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), (tsinV.size() == 1 ? tsinV.elementAt(0) : null));
tasksV.add(tfRefreshTreeTask);
} else if (e.getActionCommand().equals(TestingFrameworkPanel.REMOVE_DIFF_TESTCRITERIA)) {
final int OLDER = 0;
final int NEWER = 1;
final TestSuiteInfoNew[] testSuiteInfoHolder = new TestSuiteInfoNew[2];
if (selectedTreePaths.length == 2 && ((BioModelNode) selectedTreePaths[0].getLastPathComponent()).getUserObject() instanceof TestSuiteInfoNew && ((BioModelNode) selectedTreePaths[1].getLastPathComponent()).getUserObject() instanceof TestSuiteInfoNew) {
// do outside task because its quick
TestSuiteInfoNew testSuiteInfoOlder = (TestSuiteInfoNew) ((BioModelNode) selectedTreePaths[0].getLastPathComponent()).getUserObject();
TestSuiteInfoNew testSuiteInfoNewer = (TestSuiteInfoNew) ((BioModelNode) selectedTreePaths[1].getLastPathComponent()).getUserObject();
if (testSuiteInfoOlder.getTSDate().compareTo(testSuiteInfoNewer.getTSDate()) > 0) {
TestSuiteInfoNew temp = testSuiteInfoOlder;
testSuiteInfoOlder = testSuiteInfoNewer;
testSuiteInfoNewer = temp;
}
testSuiteInfoHolder[OLDER] = testSuiteInfoOlder;
testSuiteInfoHolder[NEWER] = testSuiteInfoNewer;
AsynchClientTask showDiffTask = new AsynchClientTask("Show Differential TestCriteria...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
public void run(Hashtable<String, Object> hashTable) throws Exception {
ArrayList<TestSuiteNew> bothTestSuites = new ArrayList<TestSuiteNew>();
if (getClientTaskStatusSupport() != null) {
getClientTaskStatusSupport().setProgress(25);
getClientTaskStatusSupport().setMessage("Getting TestSuiteInfo '" + testSuiteInfoHolder[OLDER].getTSID() + "'");
}
bothTestSuites.add(getDocumentManager().getTestSuite(testSuiteInfoHolder[OLDER].getTSKey()));
if (getClientTaskStatusSupport() != null) {
getClientTaskStatusSupport().setProgress(50);
getClientTaskStatusSupport().setMessage("Getting TestSuiteInfo '" + testSuiteInfoHolder[NEWER].getTSID() + "'");
}
bothTestSuites.add(getDocumentManager().getTestSuite(testSuiteInfoHolder[NEWER].getTSKey()));
HashMap<String, TestCriteriaNew> olderTestCritHashMap = new HashMap<String, TestCriteriaNew>();
ArrayList<String> olderTestCaseBaseNames = new ArrayList<String>();
TreeMap<String, TestCriteriaNew> newDiffTestCriteria = new TreeMap<String, TestCriteriaNew>();
int excludedCount = 0;
for (TestSuiteNew currentTestSuite : bothTestSuites) {
BigDecimal currentTestSuiteKey = currentTestSuite.getTSInfoNew().getTSKey();
for (TestCaseNew tcn : currentTestSuite.getTestCases()) {
String prefixInfo = "TS='" + currentTestSuite.getTSInfoNew().getTSID() + "' Type='" + tcn.getType() + "' ";
String baseName = (tcn instanceof TestCaseNewBioModel ? "BioModel='" + ((TestCaseNewBioModel) tcn).getBioModelInfo().getVersion().getName() + "' App='" + ((TestCaseNewBioModel) tcn).getSimContextName() + "'" : "MathModel='" + ((TestCaseNewMathModel) tcn).getMathModelInfo().getVersion().getName()) + "'";
if (currentTestSuite.getTSInfoNew().getTSKey().equals(testSuiteInfoHolder[OLDER].getTSKey())) {
if (!olderTestCaseBaseNames.contains(baseName)) {
olderTestCaseBaseNames.add(baseName);
} else {
throw new Exception("Old testcase names duplicated.");
}
}
for (TestCriteriaNew tcrit : tcn.getTestCriterias()) {
String name = baseName + " Sim='" + tcrit.getSimInfo().getName() + "'";
if (olderTestCritHashMap.containsKey(name)) {
if (currentTestSuiteKey.equals(testSuiteInfoHolder[OLDER].getTSKey())) {
throw new Exception("---Problem--- Older names not unique");
}
continue;
} else if (currentTestSuiteKey.equals(testSuiteInfoHolder[NEWER].getTSKey())) {
if (!olderTestCaseBaseNames.contains(baseName)) {
// this happens when new TestSuite has added TestCase after duplication
excludedCount += 1;
} else if (newDiffTestCriteria.put(prefixInfo + name, tcrit) != null) {
throw new Exception("---Problem--- Newer added names not unique");
}
continue;
}
olderTestCritHashMap.put(name, tcrit);
}
}
}
if (newDiffTestCriteria.size() > 0) {
if (getClientTaskStatusSupport() != null) {
getClientTaskStatusSupport().setMessage("Showing Differential list...");
}
String[][] rowData = new String[newDiffTestCriteria.size()][1];
String[] addedNamesArr = newDiffTestCriteria.keySet().toArray(new String[0]);
for (int i = 0; i < addedNamesArr.length; i++) {
rowData[i][0] = addedNamesArr[i];
}
final String DELETE = "Delete";
TableListResult result = DialogUtils.showComponentOptionsTableList(gettestingFrameworkPanel(), "Remove TestCriteria in TS='" + testSuiteInfoHolder[NEWER].getTSID() + "' that were not in TS='" + testSuiteInfoHolder[OLDER].getTSID() + "' (count=" + rowData.length + " of " + olderTestCritHashMap.size() + ", excluded=" + excludedCount + ")", new String[] { "Diff TestCriteria" }, rowData, ListSelectionModel.MULTIPLE_INTERVAL_SELECTION, null, new String[] { DELETE, "Cancel" }, DELETE, null);
if (result != null && result.selectedOption != null && result.selectedOption.equals(DELETE) && result.selectedTableRows != null && result.selectedTableRows.length > 0) {
TestCriteriaNew[] allNewDiffTeestCritArr = newDiffTestCriteria.values().toArray(new TestCriteriaNew[0]);
TestCriteriaNew[] selTestCritsArr = new TestCriteriaNew[result.selectedTableRows.length];
for (int i = 0; i < result.selectedTableRows.length; i++) {
selTestCritsArr[i] = allNewDiffTeestCritArr[result.selectedTableRows[i]];
// System.out.println("Selected= "+rowData[result.selectedTableRows[i]][0]+" -- SimName="+selTestCritsArrHolder[0][i].getSimInfo().getVersion().getName());
}
hashTable.put(TFRemoveTestCriteria.REMOVE_THESE_TESTCRITERIAS, selTestCritsArr);
} else {
throw UserCancelException.CANCEL_GENERIC;
}
} else {
throw new Exception("No differential TestCriteria found");
}
}
};
AsynchClientTask shouldRefreshTask = new // Prevent annoying refresh if cancel
AsynchClientTask(// Prevent annoying refresh if cancel
"", // Prevent annoying refresh if cancel
AsynchClientTask.TASKTYPE_SWING_NONBLOCKING) {
public void run(Hashtable<String, Object> hashTable) throws Exception {
new TFRefresh(getTestingFrameworkWindowManager(), testSuiteInfoHolder[NEWER]).run(hashTable);
}
};
tasksV.add(showDiffTask);
tasksV.add(new TFRemoveTestCriteria(getTestingFrameworkWindowManager()));
tasksV.add(shouldRefreshTask);
// tasksV.add(new TFRefresh(getTestingFrameworkWindowManager(),testSuiteInfoHolder[NEWER]));
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.REMOVE_TESTCRITERIA)) {
if (selectedObj instanceof TestCriteriaNew) {
ArrayList<TestCriteriaNew> selTestCritsArr = new ArrayList<TestCriteriaNew>();
for (int i = 0; selectedTreePaths != null && i < selectedTreePaths.length; i += 1) {
Object selTreeNode = ((BioModelNode) selectedTreePaths[i].getLastPathComponent()).getUserObject();
if (selTreeNode instanceof TestCriteriaNew) {
selTestCritsArr.add(((TestCriteriaNew) selTreeNode));
}
}
final String DELETE = "Delete";
String response = DialogUtils.showWarningDialog(gettestingFrameworkPanel(), "Delete " + selTestCritsArr.size() + " TestCriterias?", new String[] { DELETE, "Cancel" }, DELETE);
if (response != null && response.equals(DELETE)) {
tasksV.add(new TFRemoveTestCriteria(getTestingFrameworkWindowManager(), selTestCritsArr.toArray(new TestCriteriaNew[0])));
TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCriteria();
tasksV.add(new TFRefresh(getTestingFrameworkWindowManager(), tsInfo));
} else {
throw UserCancelException.CANCEL_GENERIC;
}
} else {
throw new Exception("Selected Object is not a TestCriteria! Cannot remove test criteria.");
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.EDIT_TESTCRITERIA)) {
if (selectedObj instanceof TestCriteriaNew) {
TestCriteriaNew tCriteria = (TestCriteriaNew) selectedObj;
TestCaseNew testCase = gettestingFrameworkPanel().getTestCaseOfSelectedCriteria();
TestCriteriaNew tcritNew = getTestingFrameworkWindowManager().getNewTestCriteriaFromUser(testCase.getType(), tCriteria);
tasksV.add(new TFUpdateTestCriteria(getTestingFrameworkWindowManager(), tCriteria, tcritNew));
TestSuiteInfoNew tsInfo = gettestingFrameworkPanel().getTestSuiteInfoOfSelectedTestCriteria();
tfRefreshTreeTask = new TFRefresh(getTestingFrameworkWindowManager(), tsInfo);
tasksV.add(tfRefreshTreeTask);
} else {
throw new Exception("Selected Object is not a TestCriteria! Cannot edit test criteria.");
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.COPY_TCRIT_SIMID)) {
if (selectedObj instanceof TestCriteriaNew) {
TestCriteriaNew tCriteria = (TestCriteriaNew) selectedObj;
KeyValue testCritSimID = tCriteria.getSimInfo().getVersion().getVersionKey();
VCellTransferable.sendToClipboard(testCritSimID.toString());
return;
} else {
throw new Exception("Selected Object is not a TestCriteria! Copy simid failed.");
}
} else if (e.getActionCommand().equals(TestingFrameworkPanel.LOAD_MODEL)) {
final String LOAD_THIS_MODEL = "LOAD_THIS_MODEL";
AsynchClientTask modelInfoTask = new AsynchClientTask("Finding Model Info...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
@Override
public void run(Hashtable<String, Object> hashTable) throws Exception {
VCDocumentInfo vcDocumentInfo = null;
if (selectedObj instanceof TestCaseNew) {
TestCaseNew testCase = (TestCaseNew) selectedObj;
if (testCase instanceof TestCaseNewMathModel) {
vcDocumentInfo = ((TestCaseNewMathModel) testCase).getMathModelInfo();
} else if (testCase instanceof TestCaseNewBioModel) {
vcDocumentInfo = ((TestCaseNewBioModel) testCase).getBioModelInfo();
} else {
throw new IllegalArgumentException("Unexpected TestCase type=" + testCase.getClass().getName());
}
hashTable.put(LOAD_THIS_MODEL, vcDocumentInfo);
} else if (selectedObj instanceof LoadTestTreeInfo) {
throw new Exception("Not yet implemented for LoadTest.");
// LoadTestTreeInfo loadTestTreeInfo = (LoadTestTreeInfo)selectedObj;
// if(loadTestTreeInfo.modelType.equals(LoadTestInfoOpResults.MODELTYPE_BIO)){
// vcDocumentInfo = getDocumentManager().getBioModelInfo(loadTestTreeInfo.bioOrMathModelKey);
// }else if(loadTestTreeInfo.modelType.equals(LoadTestInfoOpResults.MODELTYPE_MATH)){
// vcDocumentInfo = getDocumentManager().getMathModelInfo(loadTestTreeInfo.bioOrMathModelKey);
// }else{
// throw new IllegalArgumentException("Unexpected LoadTestTreeInfo type="+loadTestTreeInfo.modelType);
// }
// hashTable.put(LOAD_THIS_MODEL, vcDocumentInfo);
}
}
};
AsynchClientTask openModelTask = new AsynchClientTask("Opening model...", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {
@Override
public void run(Hashtable<String, Object> hashTable) throws Exception {
if (selectedObj instanceof TestCaseNew) {
getTestingFrameworkWindowManager().loadModel((VCDocumentInfo) hashTable.get(LOAD_THIS_MODEL));
} else if (selectedObj instanceof LoadTestTreeInfo) {
throw new Exception("Not yet implemented for LoadTest.");
} else {
throw new Exception("Load Model expecting TestCaseNew or LoadTestTreeInfo but got " + selectedObj.getClass().getName());
}
}
};
tasksV.add(modelInfoTask);
tasksV.add(openModelTask);
}
// tasksV.add(tfRefreshTreeTask);
AsynchClientTask[] tasksArr = new AsynchClientTask[tasksV.size()];
tasksV.copyInto(tasksArr);
ClientTaskDispatcher.dispatch(this, hash, tasksArr, true);
} catch (Throwable exc) {
if (!(exc instanceof UserCancelException) && !(exc instanceof UtilCancelException)) {
exc.printStackTrace(System.out);
PopupGenerator.showErrorDialog(TestingFrameworkWindowPanel.this, exc.getMessage(), exc);
}
}
}
Also used :
HashMap(java.util.HashMap)
ActionEvent(java.awt.event.ActionEvent)
LoadTestInfoOpResults(cbit.vcell.numericstest.LoadTestInfoOpResults)
UserCancelException(org.vcell.util.UserCancelException)
ArrayList(java.util.ArrayList)
TFUpdateRunningStatus(cbit.vcell.client.task.TFUpdateRunningStatus)
LoadTestSoftwareVersionTimeStamp(cbit.vcell.numericstest.LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp)
TFRemove(cbit.vcell.client.task.TFRemove)
TFRemoveTestCriteria(cbit.vcell.client.task.TFRemoveTestCriteria)
TreeSet(java.util.TreeSet)
Vector(java.util.Vector)
UtilCancelException(org.vcell.util.UtilCancelException)
TestSuiteNew(cbit.vcell.numericstest.TestSuiteNew)
TestCriteriaNew(cbit.vcell.numericstest.TestCriteriaNew)
TestCaseNew(cbit.vcell.numericstest.TestCaseNew)
SimulationStatus(cbit.vcell.server.SimulationStatus)
TFDuplicateTestSuite(cbit.vcell.client.task.TFDuplicateTestSuite)
SimulationInfo(cbit.vcell.solver.SimulationInfo)
TableListResult(org.vcell.util.gui.DialogUtils.TableListResult)
AsynchClientTask(cbit.vcell.client.task.AsynchClientTask)
KeyValue(org.vcell.util.document.KeyValue)
LoadTestInfoOP(cbit.vcell.numericstest.LoadTestInfoOP)
BioModelNode(cbit.vcell.desktop.BioModelNode)
TestingFrmwkTreeModel(cbit.vcell.client.desktop.testingframework.TestingFrmwkTreeModel)
TFGenerateReport(cbit.vcell.client.task.TFGenerateReport)
TestCaseNewBioModel(cbit.vcell.numericstest.TestCaseNewBioModel)
TFAddTestSuite(cbit.vcell.client.task.TFAddTestSuite)
Hashtable(java.util.Hashtable)
LoadTestTreeInfo(cbit.vcell.client.desktop.testingframework.TestingFrmwkTreeModel.LoadTestTreeInfo)
JLabel(javax.swing.JLabel)
TreeMap(java.util.TreeMap)
Date(java.util.Date)
UtilCancelException(org.vcell.util.UtilCancelException)
UserCancelException(org.vcell.util.UserCancelException)
BigDecimal(java.math.BigDecimal)
TFUpdateRunningStatus(cbit.vcell.client.task.TFUpdateRunningStatus)
LoadTestTreeInfo(cbit.vcell.client.desktop.testingframework.TestingFrmwkTreeModel.LoadTestTreeInfo)
TreePath(javax.swing.tree.TreePath)
VCDocumentInfo(org.vcell.util.document.VCDocumentInfo)
TFUpdateTestCriteria(cbit.vcell.client.task.TFUpdateTestCriteria)
TFRunSims(cbit.vcell.client.task.TFRunSims)
TFRefresh(cbit.vcell.client.task.TFRefresh)
TestCriteriaNew(cbit.vcell.numericstest.TestCriteriaNew)
TestCaseNewMathModel(cbit.vcell.numericstest.TestCaseNewMathModel)
SimpleDateFormat(java.text.SimpleDateFormat)
TestSuiteInfoNew(cbit.vcell.numericstest.TestSuiteInfoNew)
Example 5 with TestCaseNewBioModel
use of cbit.vcell.numericstest.TestCaseNewBioModel in project vcell by virtualcell.
the class TestingFrameworkWindowManager method generateTestCaseReport.
/**
* Insert the method's description here.
* Creation date: (8/18/2003 5:36:47 PM)
*/
public String generateTestCaseReport(TestCaseNew testCase, TestCriteriaNew onlyThisTCrit, ClientTaskStatusSupport pp, TFGenerateReport.VCDocumentAndSimInfo userDefinedRefSimInfo) {
StringBuffer reportTCBuffer = new StringBuffer();
if (testCase == null) {
reportTCBuffer.append("\n\tTEST CASE :\tERROR: Test Case is NULL\n");
} else {
pp.setMessage(testCase.getVersion().getName() + " " + testCase.getType() + " Getting Simulations");
// Get the Simulations
Simulation[] sims = null;
reportTCBuffer.append("\n\tTEST CASE : " + (testCase.getVersion() != null ? testCase.getVersion().getName() : "Null") + "\n\tAnnotation : " + testCase.getAnnotation() + "\n");
try {
if (testCase instanceof TestCaseNewMathModel) {
MathModelInfo mmInfo = ((TestCaseNewMathModel) testCase).getMathModelInfo();
MathModel mathModel = getRequestManager().getDocumentManager().getMathModel(mmInfo);
sims = mathModel.getSimulations();
reportTCBuffer.append("\tMathModel : " + mmInfo.getVersion().getName() + ", " + mmInfo.getVersion().getDate().toString() + "\n");
} else if (testCase instanceof TestCaseNewBioModel) {
TestCaseNewBioModel bioTestCase = (TestCaseNewBioModel) testCase;
// bioTestCase.
BioModelInfo bmInfo = bioTestCase.getBioModelInfo();
BioModel bioModel = getRequestManager().getDocumentManager().getBioModel(bmInfo);
SimulationContext[] simContextArr = bioModel.getSimulationContexts();
if (simContextArr != null && simContextArr.length > 0) {
SimulationContext simContext = null;
for (int i = 0; i < simContextArr.length; i += 1) {
if (simContextArr[i].getVersion().getVersionKey().compareEqual(bioTestCase.getSimContextKey())) {
simContext = simContextArr[i];
break;
}
}
if (simContext != null) {
sims = bioModel.getSimulations(simContext);
reportTCBuffer.append("\tBioModel : " + bmInfo.getVersion().getName() + ", " + bmInfo.getVersion().getDate().toString() + "\n");
}
}
}
if (sims == null || sims.length == 0) {
reportTCBuffer.append("\tERROR " + "No sims found for TestCase " + (testCase.getVersion() != null ? "name=" + testCase.getVersion().getName() : "key=" + testCase.getTCKey()) + "\n");
}
if (testCase.getTestCriterias() == null || sims.length != testCase.getTestCriterias().length) {
reportTCBuffer.append("\tNote " + "Num sims=" + sims.length + " does not match testCriteria length=" + (testCase.getTestCriterias() != null ? testCase.getTestCriterias().length + "" : "null") + " for TestCase " + (testCase.getVersion() != null ? "name=" + testCase.getVersion().getName() : "key=" + testCase.getTCKey()) + "\n");
}
// Sort
if (sims.length > 0) {
java.util.Arrays.sort(sims, new java.util.Comparator<Simulation>() {
public int compare(Simulation si1, Simulation si2) {
return si1.getName().compareTo(si2.getName());
}
public boolean equals(Object obj) {
return false;
}
});
}
TestCriteriaNew[] testCriterias = (onlyThisTCrit != null ? new TestCriteriaNew[] { onlyThisTCrit } : testCase.getTestCriterias());
for (int k = 0; k < sims.length; k++) {
TestCriteriaNew testCriteria = getMatchingTestCriteria(sims[k], testCriterias);
if (testCriteria != null) {
pp.setMessage((testCase instanceof TestCaseNewMathModel ? "(MM)" : "(BM)") + " " + (onlyThisTCrit == null ? "sim " + (k + 1) + " of " + sims.length : "sim=" + onlyThisTCrit.getSimInfo().getName()) + " " + testCase.getVersion().getName() + " " + testCase.getType());
reportTCBuffer.append(generateTestCriteriaReport(testCase, testCriteria, sims[k], userDefinedRefSimInfo));
}
}
} catch (UserCancelException e) {
throw e;
} catch (Throwable e) {
e.printStackTrace();
reportTCBuffer.append("\tERROR " + e.getClass().getName() + " mesg=" + e.getMessage() + "\n");
try {
if (onlyThisTCrit != null) {
updateTCritStatus(onlyThisTCrit, TestCriteriaNew.TCRIT_STATUS_RPERROR, "TestCase Error " + e.getClass().getName() + " " + e.getMessage());
} else if (testCase.getTestCriterias() != null) {
for (int i = 0; i < testCase.getTestCriterias().length; i += 1) {
updateTCritStatus(testCase.getTestCriterias()[i], TestCriteriaNew.TCRIT_STATUS_RPERROR, "TestCase Error " + e.getClass().getName() + " " + e.getMessage());
}
}
} catch (Throwable e2) {
//
}
}
}
return reportTCBuffer.toString();
}
Also used :
MathModel(cbit.vcell.mathmodel.MathModel)
AddTestCasesOPMathModel(cbit.vcell.numericstest.AddTestCasesOPMathModel)
TestCaseNewMathModel(cbit.vcell.numericstest.TestCaseNewMathModel)
TestCriteriaNewMathModel(cbit.vcell.numericstest.TestCriteriaNewMathModel)
EditTestCriteriaOPMathModel(cbit.vcell.numericstest.EditTestCriteriaOPMathModel)
AddTestCriteriaOPMathModel(cbit.vcell.numericstest.AddTestCriteriaOPMathModel)
BioModelInfo(org.vcell.util.document.BioModelInfo)
UserCancelException(org.vcell.util.UserCancelException)
MathModelInfo(org.vcell.util.document.MathModelInfo)
TestCaseNewBioModel(cbit.vcell.numericstest.TestCaseNewBioModel)
SimulationContext(cbit.vcell.mapping.SimulationContext)
Simulation(cbit.vcell.solver.Simulation)
TestCaseNewBioModel(cbit.vcell.numericstest.TestCaseNewBioModel)
TestCriteriaNewBioModel(cbit.vcell.numericstest.TestCriteriaNewBioModel)
AddTestCasesOPBioModel(cbit.vcell.numericstest.AddTestCasesOPBioModel)
BioModel(cbit.vcell.biomodel.BioModel)
EditTestCriteriaOPBioModel(cbit.vcell.numericstest.EditTestCriteriaOPBioModel)
AddTestCriteriaOPBioModel(cbit.vcell.numericstest.AddTestCriteriaOPBioModel)
TestCriteriaNew(cbit.vcell.numericstest.TestCriteriaNew)
TestCaseNewMathModel(cbit.vcell.numericstest.TestCaseNewMathModel)
Aggregations
TestCaseNewBioModel (cbit.vcell.numericstest.TestCaseNewBioModel)7
TestCaseNewMathModel (cbit.vcell.numericstest.TestCaseNewMathModel)7
TestCriteriaNewBioModel (cbit.vcell.numericstest.TestCriteriaNewBioModel)5
TestCriteriaNewMathModel (cbit.vcell.numericstest.TestCriteriaNewMathModel)5
UserCancelException (org.vcell.util.UserCancelException)5
TestCaseNew (cbit.vcell.numericstest.TestCaseNew)4
TestCriteriaNew (cbit.vcell.numericstest.TestCriteriaNew)4
TestSuiteNew (cbit.vcell.numericstest.TestSuiteNew)4
DataAccessException (org.vcell.util.DataAccessException)4
BioModel (cbit.vcell.biomodel.BioModel)3
MathModel (cbit.vcell.mathmodel.MathModel)3
AddTestCasesOPBioModel (cbit.vcell.numericstest.AddTestCasesOPBioModel)3
AddTestCasesOPMathModel (cbit.vcell.numericstest.AddTestCasesOPMathModel)3
AddTestCriteriaOPBioModel (cbit.vcell.numericstest.AddTestCriteriaOPBioModel)3
TestSuiteInfoNew (cbit.vcell.numericstest.TestSuiteInfoNew)3
BioModelInfo (org.vcell.util.document.BioModelInfo)3
KeyValue (org.vcell.util.document.KeyValue)3
MathModelInfo (org.vcell.util.document.MathModelInfo)3
TFGenerateReport (cbit.vcell.client.task.TFGenerateReport)2
SimulationContext (cbit.vcell.mapping.SimulationContext)2
