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Example 1 with AddTestCasesOP

use of cbit.vcell.numericstest.AddTestCasesOP in project vcell by virtualcell.

the class TestingFrameworkWindowManager method addTestCases.

/**
 * Insert the method's description here.
 * Creation date: (4/10/2003 11:27:32 AM)
 * @param testCase cbit.vcell.numericstestingframework.TestCase
 */
public String addTestCases(final TestSuiteInfoNew tsInfo, final TestCaseNew[] testCaseArray, int regrRefFlag, ClientTaskStatusSupport pp) {
    if (tsInfo == null) {
        throw new IllegalArgumentException("TestSuiteInfo cannot be null");
    }
    if (testCaseArray == null || testCaseArray.length == 0) {
        throw new IllegalArgumentException("TestCases cannot be null / empty");
    }
    // make modifiable list
    List<TestCaseNew> testCases = new ArrayList<>(Arrays.asList(testCaseArray));
    StringBuffer errors = new StringBuffer();
    // When a testCase (mathmodel/biomodel) is added to a testSuite, a new version of the mathModel/biomodel should be created.
    // Also, the simulations in the original mathmodel/biomodel should be rid of their parent simulation reference.
    pp.setMessage("Getting testSuite");
    pp.setProgress(1);
    TestSuiteNew testSuite = null;
    try {
        testSuite = getRequestManager().getDocumentManager().getTestSuite(tsInfo.getTSKey());
    } catch (Throwable e) {
        throw new RuntimeException("couldn't get test suite " + tsInfo.getTSID() + "\n" + e.getClass().getName() + " mesg=" + e.getMessage() + "\n");
    }
    if (testSuite != null && testSuite.getTSInfoNew().isLocked()) {
        throw new RuntimeException("Cannot addTestCases to locked table");
    }
    if (testSuite != null) {
        // Saving BioModels
        TestCaseNew[] existingTestCases = testSuite.getTestCases();
        java.util.HashMap<KeyValue, BioModel> bioModelHashMap = new java.util.HashMap<KeyValue, BioModel>();
        // if(existingTestCases != null){
        // Find BioModels, Using the same BM reference for sibling Applications
        int pcounter = 0;
        // use iterator to allow removal of test case from collection if exception
        Iterator<TestCaseNew> iter = testCases.iterator();
        while (iter.hasNext()) {
            TestCaseNew testCase = iter.next();
            pp.setProgress(Math.max(1, ((int) ((pcounter++ / (double) (testCases.size() * 3)) * 100))));
            pp.setMessage("Checking " + testCase.getVersion().getName());
            try {
                if (testCase instanceof TestCaseNewBioModel) {
                    TestCaseNewBioModel bioTestCase = (TestCaseNewBioModel) testCase;
                    // 
                    if (bioModelHashMap.get(bioTestCase.getBioModelInfo().getVersion().getVersionKey()) == null) {
                        pp.setMessage("Getting BM " + testCase.getVersion().getName());
                        BioModel bioModel = getRequestManager().getDocumentManager().getBioModel(bioTestCase.getBioModelInfo().getVersion().getVersionKey());
                        if (!bioModel.getVersion().getOwner().equals(getRequestManager().getDocumentManager().getUser())) {
                            throw new Exception("BioModel does not belong to VCELLTESTACCOUNT, cannot proceed with test!");
                        }
                        // 
                        // if biomodel already exists in same testsuite, then use this BioModel edition
                        // 
                        BioModel newBioModel = null;
                        if (existingTestCases != null) {
                            for (int j = 0; newBioModel == null && j < existingTestCases.length; j++) {
                                if (existingTestCases[j] instanceof TestCaseNewBioModel) {
                                    TestCaseNewBioModel existingTestCaseBioModel = (TestCaseNewBioModel) existingTestCases[j];
                                    // 
                                    if (existingTestCaseBioModel.getBioModelInfo().getVersion().getBranchID().equals(bioTestCase.getBioModelInfo().getVersion().getBranchID())) {
                                        // 
                                        if (existingTestCaseBioModel.getBioModelInfo().getVersion().getVersionKey().equals(bioTestCase.getBioModelInfo().getVersion().getVersionKey())) {
                                            // 
                                            // same, store this "unchanged" in bioModelHashMap
                                            // 
                                            newBioModel = bioModel;
                                        } else {
                                            // 
                                            throw new Exception("can't add new test case using (" + bioTestCase.getBioModelInfo().getVersion().getName() + " " + bioTestCase.getBioModelInfo().getVersion().getDate() + ")\n" + "a test case already exists with different edition of same BioModel dated " + existingTestCaseBioModel.getBioModelInfo().getVersion().getDate());
                                        }
                                    }
                                }
                            }
                        }
                        if (newBioModel == null) {
                            pp.setMessage("Saving BM " + testCase.getVersion().getName());
                            // 
                            // some older models have membrane voltage variable names which are not unique
                            // (e.g. membranes 'pm' and 'nm' both have membrane voltage variables named 'Voltage_Membrane0')
                            // 
                            // if this is the case, we will try to repair the conflict (for math testing purposes only) by renaming the voltage variables to their default values.
                            // 
                            // Ordinarily, the conflict will be identified as an "Error" issue and the user will be prompted to repair before saving or math generation.
                            // 
                            bioModel.refreshDependencies();
                            boolean bFoundIdentifierConflictUponLoading = hasDuplicateIdentifiers(bioModel);
                            if (bFoundIdentifierConflictUponLoading) {
                                // 
                                // look for two MembraneVoltage instances with same variable name, rename all
                                // 
                                HashSet<String> membraneVoltageVarNames = new HashSet<String>();
                                ArrayList<MembraneVoltage> membraneVoltageVars = new ArrayList<MembraneVoltage>();
                                for (Structure struct : bioModel.getModel().getStructures()) {
                                    if (struct instanceof Membrane) {
                                        MembraneVoltage membraneVoltage = ((Membrane) struct).getMembraneVoltage();
                                        if (membraneVoltage != null) {
                                            membraneVoltageVars.add(membraneVoltage);
                                            membraneVoltageVarNames.add(membraneVoltage.getName());
                                        }
                                    }
                                }
                                if (membraneVoltageVars.size() != membraneVoltageVarNames.size()) {
                                    // rename them all to the default names
                                    for (MembraneVoltage memVoltage : membraneVoltageVars) {
                                        memVoltage.setName(Membrane.getDefaultMembraneVoltageName(memVoltage.getMembrane().getName()));
                                    }
                                }
                            }
                            SimulationContext[] simContexts = bioModel.getSimulationContexts();
                            for (int j = 0; j < simContexts.length; j++) {
                                simContexts[j].clearVersion();
                                GeometrySurfaceDescription gsd = simContexts[j].getGeometry().getGeometrySurfaceDescription();
                                if (gsd != null) {
                                    GeometricRegion[] grArr = gsd.getGeometricRegions();
                                    if (grArr == null) {
                                        gsd.updateAll();
                                    }
                                }
                                MathMapping mathMapping = simContexts[j].createNewMathMapping();
                                // for older models that do not have absolute compartment sizes set, but have relative sizes (SVR/VF); or if there is only one compartment with size not set,
                                // compute absolute compartment sizes using relative sizes and assuming a default value of '1' for one of the compartments.
                                // Otherwise, the math generation will fail, since for the relaxed topology (VCell 5.3 and later) absolute compartment sizes are required.
                                GeometryContext gc = simContexts[j].getGeometryContext();
                                if (simContexts[j].getGeometry().getDimension() == 0 && ((gc.isAllSizeSpecifiedNull() && !gc.isAllVolFracAndSurfVolSpecifiedNull()) || (gc.getModel().getStructures().length == 1 && gc.isAllSizeSpecifiedNull()))) {
                                    // choose the first structure in model and set its size to '1'.
                                    Structure struct = simContexts[j].getModel().getStructure(0);
                                    double structSize = 1.0;
                                    StructureSizeSolver.updateAbsoluteStructureSizes(simContexts[j], struct, structSize, struct.getStructureSize().getUnitDefinition());
                                }
                                simContexts[j].setMathDescription(mathMapping.getMathDescription());
                            }
                            Simulation[] sims = bioModel.getSimulations();
                            String[] simNames = new String[sims.length];
                            for (int j = 0; j < sims.length; j++) {
                                // prevents parent simulation (from the original mathmodel) reference connection
                                // Otherwise it will refer to data from previous (parent) simulation.
                                sims[j].clearVersion();
                                simNames[j] = sims[j].getName();
                            // if(sims[j].getSolverTaskDescription().getSolverDescription().equals(SolverDescription.FiniteVolume)){
                            // sims[j].getSolverTaskDescription().setSolverDescription(SolverDescription.FiniteVolumeStandalone);
                            // }
                            }
                            newBioModel = getRequestManager().getDocumentManager().save(bioModel, simNames);
                        }
                        bioModelHashMap.put(bioTestCase.getBioModelInfo().getVersion().getVersionKey(), newBioModel);
                    }
                }
            } catch (Throwable e) {
                String identifier = testCase.getVersion() != null ? "Name=" + testCase.getVersion().getName() : "TCKey=" + testCase.getTCKey();
                if (lg.isInfoEnabled()) {
                    lg.info(identifier, e);
                }
                errors.append("Error collecting BioModel for TestCase " + identifier + '\n' + e.getClass().getName() + " " + e.getMessage() + '\n');
                // remove to avoid further processing attempts
                iter.remove();
            }
        }
        // }
        // then process each BioModelTestCase individually
        // if(bioModelHashMap != null){
        pcounter = 0;
        for (TestCaseNew testCase : testCases) {
            pp.setProgress(Math.max(1, ((int) ((pcounter++ / (double) (testCases.size() * 3)) * 100))));
            pp.setMessage("Checking " + testCase.getVersion().getName());
            try {
                AddTestCasesOP testCaseOP = null;
                if (testCase instanceof TestCaseNewBioModel) {
                    pp.setMessage("Processing BM " + testCase.getVersion().getName());
                    TestCaseNewBioModel bioTestCase = (TestCaseNewBioModel) testCase;
                    BioModel newBioModel = (BioModel) bioModelHashMap.get(bioTestCase.getBioModelInfo().getVersion().getVersionKey());
                    if (newBioModel == null) {
                        throw new Exception("BioModel not found");
                    }
                    SimulationContext simContext = null;
                    for (int j = 0; j < newBioModel.getSimulationContexts().length; j++) {
                        if (newBioModel.getSimulationContext(j).getName().equals(bioTestCase.getSimContextName())) {
                            simContext = newBioModel.getSimulationContext(j);
                        }
                    }
                    Simulation[] newSimulations = simContext.getSimulations();
                    AddTestCriteriaOPBioModel[] testCriteriaOPs = new AddTestCriteriaOPBioModel[newSimulations.length];
                    for (int j = 0; j < newSimulations.length; j++) {
                        TestCriteriaNewBioModel tcritOrigForSimName = null;
                        for (int k = 0; bioTestCase.getTestCriterias() != null && k < bioTestCase.getTestCriterias().length; k += 1) {
                            if (bioTestCase.getTestCriterias()[k].getSimInfo().getName().equals(newSimulations[j].getName())) {
                                tcritOrigForSimName = (TestCriteriaNewBioModel) bioTestCase.getTestCriterias()[k];
                                break;
                            }
                        }
                        KeyValue regressionBioModelKey = null;
                        KeyValue regressionBioModelSimKey = null;
                        if (bioTestCase.getType().equals(TestCaseNew.REGRESSION)) {
                            if (regrRefFlag == TestingFrameworkWindowManager.COPY_REGRREF) {
                                regressionBioModelKey = (tcritOrigForSimName != null && tcritOrigForSimName.getRegressionBioModelInfo() != null ? tcritOrigForSimName.getRegressionBioModelInfo().getVersion().getVersionKey() : null);
                                regressionBioModelSimKey = (tcritOrigForSimName != null && tcritOrigForSimName.getRegressionSimInfo() != null ? tcritOrigForSimName.getRegressionSimInfo().getVersion().getVersionKey() : null);
                            } else if (regrRefFlag == TestingFrameworkWindowManager.ASSIGNORIGINAL_REGRREF) {
                                regressionBioModelKey = (tcritOrigForSimName != null ? bioTestCase.getBioModelInfo().getVersion().getVersionKey() : null);
                                regressionBioModelSimKey = (tcritOrigForSimName != null ? tcritOrigForSimName.getSimInfo().getVersion().getVersionKey() : null);
                            } else if (regrRefFlag == TestingFrameworkWindowManager.ASSIGNNEW_REGRREF) {
                                regressionBioModelKey = newBioModel.getVersion().getVersionKey();
                                regressionBioModelSimKey = newSimulations[j].getVersion().getVersionKey();
                            } else {
                                throw new IllegalArgumentException(this.getClass().getName() + ".addTestCases(...) BIOMODEL Unknown Regression Operation Flag");
                            }
                        }
                        testCriteriaOPs[j] = new AddTestCriteriaOPBioModel(testCase.getTCKey(), newSimulations[j].getVersion().getVersionKey(), regressionBioModelKey, regressionBioModelSimKey, (tcritOrigForSimName != null ? tcritOrigForSimName.getMaxAbsError() : new Double(1e-16)), (tcritOrigForSimName != null ? tcritOrigForSimName.getMaxRelError() : new Double(1e-9)), null);
                    }
                    testCaseOP = new AddTestCasesOPBioModel(new BigDecimal(tsInfo.getTSKey().toString()), newBioModel.getVersion().getVersionKey(), simContext.getKey(), bioTestCase.getType(), bioTestCase.getAnnotation(), testCriteriaOPs);
                    getRequestManager().getDocumentManager().doTestSuiteOP(testCaseOP);
                }
            } catch (Throwable e) {
                errors.append("Error processing Biomodel for TestCase " + (testCase.getVersion() != null ? "Name=" + testCase.getVersion().getName() : "TCKey=" + testCase.getTCKey()) + "\n" + e.getClass().getName() + " " + e.getMessage() + "\n");
            }
        }
        // }
        // Process MathModels
        pcounter = 0;
        for (TestCaseNew testCase : testCases) {
            pp.setProgress(Math.max(1, ((int) ((pcounter++ / (double) (testCases.size() * 3)) * 100))));
            pp.setMessage("Checking " + testCase.getVersion().getName());
            try {
                AddTestCasesOP testCaseOP = null;
                if (testCase instanceof TestCaseNewMathModel) {
                    TestCaseNewMathModel mathTestCase = (TestCaseNewMathModel) testCase;
                    pp.setMessage("Getting MathModel " + testCase.getVersion().getName());
                    MathModel mathModel = getRequestManager().getDocumentManager().getMathModel(mathTestCase.getMathModelInfo().getVersion().getVersionKey());
                    if (!mathModel.getVersion().getOwner().equals(getRequestManager().getDocumentManager().getUser())) {
                        throw new Exception("MathModel does not belong to VCELLTESTACCOUNT, cannot proceed with test!");
                    }
                    Simulation[] sims = mathModel.getSimulations();
                    String[] simNames = new String[sims.length];
                    for (int j = 0; j < sims.length; j++) {
                        // prevents parent simulation (from the original mathmodel) reference connection
                        // Otherwise it will refer to data from previous (parent) simulation.
                        sims[j].clearVersion();
                        simNames[j] = sims[j].getName();
                    // if(sims[j].getSolverTaskDescription().getSolverDescription().equals(SolverDescription.FiniteVolume)){
                    // sims[j].getSolverTaskDescription().setSolverDescription(SolverDescription.FiniteVolumeStandalone);
                    // }
                    }
                    pp.setMessage("Saving MathModel " + testCase.getVersion().getName());
                    MathModel newMathModel = getRequestManager().getDocumentManager().save(mathModel, simNames);
                    Simulation[] newSimulations = newMathModel.getSimulations();
                    AddTestCriteriaOPMathModel[] testCriteriaOPs = new AddTestCriteriaOPMathModel[newSimulations.length];
                    for (int j = 0; j < newSimulations.length; j++) {
                        TestCriteriaNewMathModel tcritOrigForSimName = null;
                        for (int k = 0; mathTestCase.getTestCriterias() != null && k < mathTestCase.getTestCriterias().length; k += 1) {
                            if (mathTestCase.getTestCriterias()[k].getSimInfo().getName().equals(newSimulations[j].getName())) {
                                tcritOrigForSimName = (TestCriteriaNewMathModel) mathTestCase.getTestCriterias()[k];
                                break;
                            }
                        }
                        KeyValue regressionMathModelKey = null;
                        KeyValue regressionMathModelSimKey = null;
                        if (mathTestCase.getType().equals(TestCaseNew.REGRESSION)) {
                            if (regrRefFlag == TestingFrameworkWindowManager.COPY_REGRREF) {
                                regressionMathModelKey = (tcritOrigForSimName != null && tcritOrigForSimName.getRegressionMathModelInfo() != null ? tcritOrigForSimName.getRegressionMathModelInfo().getVersion().getVersionKey() : null);
                                regressionMathModelSimKey = (tcritOrigForSimName != null && tcritOrigForSimName.getRegressionSimInfo() != null ? tcritOrigForSimName.getRegressionSimInfo().getVersion().getVersionKey() : null);
                            } else if (regrRefFlag == TestingFrameworkWindowManager.ASSIGNORIGINAL_REGRREF) {
                                regressionMathModelKey = (tcritOrigForSimName != null ? mathTestCase.getMathModelInfo().getVersion().getVersionKey() : null);
                                regressionMathModelSimKey = (tcritOrigForSimName != null ? tcritOrigForSimName.getSimInfo().getVersion().getVersionKey() : null);
                            } else if (regrRefFlag == TestingFrameworkWindowManager.ASSIGNNEW_REGRREF) {
                                regressionMathModelKey = newMathModel.getVersion().getVersionKey();
                                regressionMathModelSimKey = newSimulations[j].getVersion().getVersionKey();
                            } else {
                                throw new IllegalArgumentException(this.getClass().getName() + ".addTestCases(...) MATHMODEL Unknown Regression Operation Flag");
                            }
                        }
                        testCriteriaOPs[j] = new AddTestCriteriaOPMathModel(testCase.getTCKey(), newSimulations[j].getVersion().getVersionKey(), regressionMathModelKey, regressionMathModelSimKey, (tcritOrigForSimName != null ? tcritOrigForSimName.getMaxAbsError() : new Double(1e-16)), (tcritOrigForSimName != null ? tcritOrigForSimName.getMaxRelError() : new Double(1e-9)), null);
                    }
                    testCaseOP = new AddTestCasesOPMathModel(new BigDecimal(tsInfo.getTSKey().toString()), newMathModel.getVersion().getVersionKey(), mathTestCase.getType(), mathTestCase.getAnnotation(), testCriteriaOPs);
                    getRequestManager().getDocumentManager().doTestSuiteOP(testCaseOP);
                }
            } catch (Throwable e) {
                errors.append("Error processing MathModel for TestCase " + (testCase.getVersion() != null ? "Name=" + testCase.getVersion().getName() : "TCKey=" + testCase.getTCKey()) + "\n" + e.getClass().getName() + " " + e.getMessage() + "\n");
            }
        }
    }
    if (errors.length() > 0) {
        return errors.toString();
    }
    return null;
}
Also used : AddTestCriteriaOPBioModel(cbit.vcell.numericstest.AddTestCriteriaOPBioModel) AddTestCasesOPBioModel(cbit.vcell.numericstest.AddTestCasesOPBioModel) ArrayList(java.util.ArrayList) TestCriteriaNewMathModel(cbit.vcell.numericstest.TestCriteriaNewMathModel) GeometryContext(cbit.vcell.mapping.GeometryContext) HashSet(java.util.HashSet) TestSuiteNew(cbit.vcell.numericstest.TestSuiteNew) TestCaseNew(cbit.vcell.numericstest.TestCaseNew) GeometricRegion(cbit.vcell.geometry.surface.GeometricRegion) AddTestCriteriaOPMathModel(cbit.vcell.numericstest.AddTestCriteriaOPMathModel) MathMapping(cbit.vcell.mapping.MathMapping) MathModel(cbit.vcell.mathmodel.MathModel) AddTestCasesOPMathModel(cbit.vcell.numericstest.AddTestCasesOPMathModel) TestCaseNewMathModel(cbit.vcell.numericstest.TestCaseNewMathModel) TestCriteriaNewMathModel(cbit.vcell.numericstest.TestCriteriaNewMathModel) EditTestCriteriaOPMathModel(cbit.vcell.numericstest.EditTestCriteriaOPMathModel) AddTestCriteriaOPMathModel(cbit.vcell.numericstest.AddTestCriteriaOPMathModel) KeyValue(org.vcell.util.document.KeyValue) GeometrySurfaceDescription(cbit.vcell.geometry.surface.GeometrySurfaceDescription) TestCriteriaNewBioModel(cbit.vcell.numericstest.TestCriteriaNewBioModel) AddTestCasesOP(cbit.vcell.numericstest.AddTestCasesOP) TestCaseNewBioModel(cbit.vcell.numericstest.TestCaseNewBioModel) AddTestCasesOPMathModel(cbit.vcell.numericstest.AddTestCasesOPMathModel) Membrane(cbit.vcell.model.Membrane) Structure(cbit.vcell.model.Structure) SimulationContext(cbit.vcell.mapping.SimulationContext) ObjectNotFoundException(org.vcell.util.ObjectNotFoundException) DataAccessException(org.vcell.util.DataAccessException) UserCancelException(org.vcell.util.UserCancelException) BigDecimal(java.math.BigDecimal) Simulation(cbit.vcell.solver.Simulation) MembraneVoltage(cbit.vcell.model.Membrane.MembraneVoltage) TestCaseNewBioModel(cbit.vcell.numericstest.TestCaseNewBioModel) TestCriteriaNewBioModel(cbit.vcell.numericstest.TestCriteriaNewBioModel) AddTestCasesOPBioModel(cbit.vcell.numericstest.AddTestCasesOPBioModel) BioModel(cbit.vcell.biomodel.BioModel) EditTestCriteriaOPBioModel(cbit.vcell.numericstest.EditTestCriteriaOPBioModel) AddTestCriteriaOPBioModel(cbit.vcell.numericstest.AddTestCriteriaOPBioModel) TestCaseNewMathModel(cbit.vcell.numericstest.TestCaseNewMathModel)

Example 2 with AddTestCasesOP

use of cbit.vcell.numericstest.AddTestCasesOP in project vcell by virtualcell.

the class DbDriver method testSuiteOP.

/**
 * Insert the method's description here.
 * Creation date: (10/19/2004 6:55:36 AM)
 * @return cbit.vcell.numericstest.TestSuiteNew
 * @param tsop cbit.vcell.numericstest.TestSuiteOP
 */
public static TestSuiteOPResults testSuiteOP(TestSuiteOP tsop, Connection con, User user, KeyFactory keyFactory) throws SQLException, DataAccessException {
    java.util.TreeSet<BigDecimal> changedTestSuiteKeys = new java.util.TreeSet<BigDecimal>();
    String sql = null;
    Statement stmt = null;
    try {
        if (tsop instanceof ModelGeometryOP) {
            ModelGeometryOP modelGeometryOP = (ModelGeometryOP) tsop;
            if (modelGeometryOP.getVCDocumentInfo() instanceof BioModelInfo) {
                BioModelInfo bioModelInfo = (BioModelInfo) modelGeometryOP.getVCDocumentInfo();
                sql = "SELECT " + SimContextTable.table.geometryRef.getQualifiedColName() + " FROM " + SimContextTable.table.getTableName() + "," + BioModelSimContextLinkTable.table.getTableName() + " WHERE " + SimContextTable.table.name.getQualifiedColName() + " = '" + modelGeometryOP.getBioModelApplicationName() + "'" + " AND " + BioModelSimContextLinkTable.table.simContextRef.getQualifiedColName() + " = " + SimContextTable.table.id.getQualifiedColName() + " AND " + BioModelSimContextLinkTable.table.bioModelRef.getQualifiedColName() + " = " + bioModelInfo.getVersion().getVersionKey().toString();
            } else if (modelGeometryOP.getVCDocumentInfo() instanceof MathModelInfo) {
                MathModelInfo mathModelInfo = (MathModelInfo) modelGeometryOP.getVCDocumentInfo();
                sql = "SELECT " + MathDescTable.table.geometryRef.getQualifiedColName() + " FROM " + MathDescTable.table.getTableName() + "," + MathModelTable.table.getTableName() + " WHERE " + MathModelTable.table.id.getQualifiedColName() + " = " + mathModelInfo.getVersion().getVersionKey().toString() + " AND " + MathModelTable.table.mathRef.getQualifiedColName() + " = " + MathDescTable.table.id.getQualifiedColName();
            } else {
                throw new IllegalArgumentException("UnImplemented VCDocumentInfo type=" + modelGeometryOP.getVCDocumentInfo().getClass().getName());
            }
            stmt = con.createStatement();
            ResultSet rset = stmt.executeQuery(sql);
            BigDecimal geometryKey = null;
            if (rset.next()) {
                geometryKey = rset.getBigDecimal(1);
                if (rset.next()) {
                    throw new DataAccessException("Expecting only 1 Geometry but found at least 2");
                }
            } else {
                throw new DataAccessException("No Geometry found using criteria");
            }
            rset.close();
            stmt.close();
            return new ModelGeometryOPResults(new KeyValue(geometryKey));
        } else // 
        if (tsop instanceof LoadTestInfoOP) {
            // 
            if (((LoadTestInfoOP) tsop).getLoadTestOpFlag() == LoadTestOpFlag.delete) {
                // Delete before return details
                LoadTestSoftwareVersionTimeStamp[] deleteTheseVersTimeStamps = ((LoadTestInfoOP) tsop).getLoadTestSoftwareVersionTimeStamps();
                for (int i = 0; i < deleteTheseVersTimeStamps.length; i++) {
                    sql = "DELETE FROM " + LoadModelsStatTable.table.getTableName() + " WHERE " + LoadModelsStatTable.table.softwareVers + " = " + "'" + deleteTheseVersTimeStamps[i].getSoftwareVersion() + "'" + " AND " + LoadModelsStatTable.table.timeStamp + " = " + "'" + deleteTheseVersTimeStamps[i].getRunTimeStamp() + "'";
                    DbDriver.updateCleanSQL(con, sql);
                }
                return null;
            }
            // Check if Date info is requested
            if (((LoadTestInfoOP) tsop).getLoadTestOpFlag() == LoadTestOpFlag.info && ((LoadTestInfoOP) tsop).getBeginDate() != null) {
                final String YMD_FORMAT_STRING = "yyyy-MM-dd";
                SimpleDateFormat simpleDateFormat = new SimpleDateFormat(YMD_FORMAT_STRING);
                final String BETWEEN_CONDITION = " BETWEEN " + " TO_DATE('" + simpleDateFormat.format(((LoadTestInfoOP) tsop).getBeginDate()) + " 00:00:00', '" + YMD_FORMAT_STRING + " HH24:MI:SS') " + " AND " + " TO_DATE('" + simpleDateFormat.format(((LoadTestInfoOP) tsop).getEndDate()) + " 23:59:59', '" + YMD_FORMAT_STRING + " HH24:MI:SS') ";
                sql = "SELECT " + BioModelTable.table.id.getQualifiedColName() + "," + UserTable.table.userid.getUnqualifiedColName() + " FROM " + BioModelTable.table.getTableName() + "," + UserTable.table.getTableName() + " WHERE " + UserTable.table.id.getQualifiedColName() + " = " + BioModelTable.table.ownerRef.getQualifiedColName() + " AND " + BioModelTable.table.versionDate.getQualifiedColName() + BETWEEN_CONDITION + " UNION " + "SELECT " + MathModelTable.table.id.getQualifiedColName() + "," + UserTable.table.userid.getUnqualifiedColName() + " FROM " + MathModelTable.table.getTableName() + "," + UserTable.table.getTableName() + " WHERE " + UserTable.table.id.getQualifiedColName() + " = " + MathModelTable.table.ownerRef.getQualifiedColName() + " AND " + MathModelTable.table.versionDate.getQualifiedColName() + BETWEEN_CONDITION;
                stmt = con.createStatement();
                ResultSet rset = stmt.executeQuery(sql);
                TreeSet<String> uniqueUserIDTreeSet = new TreeSet<String>();
                Vector<KeyValue> keyValuesBetweenDatesV = new Vector<KeyValue>();
                while (rset.next()) {
                    uniqueUserIDTreeSet.add(rset.getString(UserTable.table.userid.getUnqualifiedColName()));
                    keyValuesBetweenDatesV.add(new KeyValue(rset.getBigDecimal(1)));
                }
                rset.close();
                stmt.close();
                return new LoadTestInfoOpResults(((LoadTestInfoOP) tsop).getBeginDate(), ((LoadTestInfoOP) tsop).getEndDate(), keyValuesBetweenDatesV.toArray(new KeyValue[0]), uniqueUserIDTreeSet.toArray(new String[0]));
            }
            // 
            // Get LoadTest Info
            // 
            // Get existing SoftwareVersion-Timestamp  count
            // 
            Vector<Integer> loadTestInfoCountV = new Vector<Integer>();
            stmt = con.createStatement();
            sql = "SELECT COUNT(*)," + LoadModelsStatTable.table.softwareVers.getUnqualifiedColName() + "," + LoadModelsStatTable.table.timeStamp.getUnqualifiedColName() + " FROM " + LoadModelsStatTable.table.getTableName() + " GROUP BY " + LoadModelsStatTable.table.softwareVers.getUnqualifiedColName() + "," + LoadModelsStatTable.table.timeStamp.getUnqualifiedColName();
            Vector<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp> loadTestSoftwareVersionTimeStampsExistingV = new Vector<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp>();
            ResultSet rset = stmt.executeQuery(sql);
            while (rset.next()) {
                String softwareVersion = TokenMangler.getSQLRestoredString(rset.getString(LoadModelsStatTable.table.softwareVers.getUnqualifiedColName()));
                String runTimeStamp = rset.getString(LoadModelsStatTable.table.timeStamp.getUnqualifiedColName());
                loadTestSoftwareVersionTimeStampsExistingV.add(new LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp(softwareVersion, runTimeStamp));
                loadTestInfoCountV.add(rset.getInt(1));
            }
            rset.close();
            stmt.close();
            // 
            // Get empty test info count (models that haven't been checked yet during a test run)
            // 
            stmt = con.createStatement();
            sql = "SELECT COUNT(*)," + LoadModelsStatTable.table.softwareVers.getUnqualifiedColName() + "," + LoadModelsStatTable.table.timeStamp.getUnqualifiedColName() + " FROM " + LoadModelsStatTable.table.getTableName() + " WHERE " + LoadModelsStatTable.table.resultFlag.getUnqualifiedColName() + " IS NULL" + " GROUP BY " + LoadModelsStatTable.table.softwareVers.getUnqualifiedColName() + "," + LoadModelsStatTable.table.timeStamp.getUnqualifiedColName();
            Vector<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp> loadTestSoftwareVersionTimeStampsEmptyV = new Vector<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp>();
            rset = stmt.executeQuery(sql);
            Integer[] loadTestInfoCountEmptyArr = new Integer[loadTestInfoCountV.size()];
            while (rset.next()) {
                String softwareVersion = TokenMangler.getSQLRestoredString(rset.getString(LoadModelsStatTable.table.softwareVers.getUnqualifiedColName()));
                String runTimeStamp = rset.getString(LoadModelsStatTable.table.timeStamp.getUnqualifiedColName());
                loadTestSoftwareVersionTimeStampsEmptyV.add(new LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp(softwareVersion, runTimeStamp));
                // match to existing array index so full and empty match
                for (int i = 0; i < loadTestSoftwareVersionTimeStampsExistingV.size(); i++) {
                    if (loadTestSoftwareVersionTimeStampsExistingV.elementAt(i).getSoftwareVersion().equals(softwareVersion) && loadTestSoftwareVersionTimeStampsExistingV.elementAt(i).getRunTimeStamp().equals(runTimeStamp)) {
                        loadTestInfoCountEmptyArr[i] = rset.getInt(1);
                    }
                }
            }
            rset.close();
            stmt.close();
            // 
            // Get total Math and Bio model count
            // 
            int totalBioMathModelCount = 0;
            stmt = con.createStatement();
            sql = "SELECT COUNT(*) FROM " + BioModelTable.table.getTableName() + " UNION " + "SELECT COUNT(*) FROM " + MathModelTable.table.getTableName();
            rset = stmt.executeQuery(sql);
            if (rset.next()) {
                totalBioMathModelCount = rset.getInt(1);
                if (rset.next()) {
                    totalBioMathModelCount += rset.getInt(1);
                } else {
                    totalBioMathModelCount = 0;
                }
            }
            if (totalBioMathModelCount == 0) {
                throw new DataAccessException("No results when querying bio and Mathmodel count");
            }
            rset.close();
            stmt.close();
            // 
            // Get slow Loads
            // 
            Object loadTestSlowHash = null;
            if (((LoadTestInfoOP) tsop).getSlowLoadThresholdMilliSec() != null) {
                Integer slowLoaderThreshold = ((LoadTestInfoOP) tsop).getSlowLoadThresholdMilliSec();
                loadTestSlowHash = getLoadTestDetails(con, slowLoaderThreshold, null);
            }
            // 
            // Get failed loads
            // 
            Object loadTestFailHash = getLoadTestDetails(con, null, null);
            // 
            // Get user specified query info.
            // 
            Object loadTestUserQueryHash = null;
            if (((LoadTestInfoOP) tsop).getUserQueryCondition() != null) {
                loadTestUserQueryHash = getLoadTestDetails(con, null, ((LoadTestInfoOP) tsop).getUserQueryCondition());
            }
            return new LoadTestInfoOpResults(loadTestInfoCountV.toArray(new Integer[0]), loadTestInfoCountEmptyArr, totalBioMathModelCount, loadTestSoftwareVersionTimeStampsExistingV.toArray(new LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp[0]), (Hashtable<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp, Vector<LoadTestInfoOpResults.LoadTestFailDetails>>) loadTestFailHash, (Hashtable<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp, Vector<LoadTestInfoOpResults.LoadTestSlowDetails>>) loadTestSlowHash, (Hashtable<LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp, Vector<LoadTestInfoOpResults.LoadTestDetails>>) loadTestUserQueryHash, ((LoadTestInfoOP) tsop).getSlowLoadThresholdMilliSec());
        }
        // 
        // TestSuite operations ---------------------------------------------------------------------------------------------------
        // 
        stmt = con.createStatement();
        if (tsop instanceof AddTestSuiteOP) {
            AddTestSuiteOP addts_tsop = (AddTestSuiteOP) tsop;
            String annotation = addts_tsop.getTestSuiteAnnotation();
            if (annotation != null) {
                if (annotation.length() == 0) {
                    annotation = null;
                } else {
                    annotation = TokenMangler.getSQLEscapedString(annotation);
                }
            }
            BigDecimal changedTSKey = keyFactory.getUniqueBigDecimal(con);
            final int NOT_LOCKED = 0;
            sql = "INSERT INTO " + TFTestSuiteTable.table.getTableName() + " VALUES(" + changedTSKey + ",'" + addts_tsop.getTestSuiteVersionID() + "'," + "'" + addts_tsop.getVCellBuildVersionID() + "'" + "," + "'" + addts_tsop.getNumericsBuildVersionID() + "'" + "," + "current_timestamp,current_timestamp," + (annotation == null ? "NULL" : "'" + annotation + "'") + "," + NOT_LOCKED + ")";
            stmt.executeUpdate(sql);
            if (addts_tsop.getAddTestCasesOPs() != null) {
                for (int i = 0; i < addts_tsop.getAddTestCasesOPs().length; i += 1) {
                    // Set new TSKey and do child OPs
                    AddTestCasesOP atcOP = addts_tsop.getAddTestCasesOPs()[i];
                    if (atcOP instanceof AddTestCasesOPMathModel) {
                        testSuiteOP(new AddTestCasesOPMathModel(changedTSKey, ((AddTestCasesOPMathModel) atcOP).getMathModelKey(), atcOP.getTestCaseType(), atcOP.getAnnotation(), ((AddTestCasesOPMathModel) atcOP).getAddTestCriteriaOPsMathModel()), con, user, keyFactory);
                    } else if (atcOP instanceof AddTestCasesOPBioModel) {
                        testSuiteOP(new AddTestCasesOPBioModel(changedTSKey, ((AddTestCasesOPBioModel) atcOP).getBioModelKey(), ((AddTestCasesOPBioModel) atcOP).getSimContextKey(), atcOP.getTestCaseType(), atcOP.getAnnotation(), ((AddTestCasesOPBioModel) atcOP).getAddTestCriteriaOPsBioModel()), con, user, keyFactory);
                    }
                }
            }
            changedTestSuiteKeys.add(changedTSKey);
        } else if (tsop instanceof AddTestCasesOPBioModel) {
            AddTestCasesOPBioModel addtc_tsop = (AddTestCasesOPBioModel) tsop;
            // 
            BigDecimal bmSimContextLinkRef = null;
            // Convert BioModelKey and SimContextKey to bmsimcontext key
            sql = "SELECT " + BioModelSimContextLinkTable.table.id.getQualifiedColName() + " FROM " + BioModelSimContextLinkTable.table.getTableName() + " WHERE " + BioModelSimContextLinkTable.table.bioModelRef.getQualifiedColName() + "=" + addtc_tsop.getBioModelKey().toString() + " AND " + BioModelSimContextLinkTable.table.simContextRef.getQualifiedColName() + "=" + addtc_tsop.getSimContextKey().toString();
            ResultSet rset = stmt.executeQuery(sql);
            if (rset.next()) {
                bmSimContextLinkRef = rset.getBigDecimal(BioModelSimContextLinkTable.table.id.getUnqualifiedColName());
                if (rset.next()) {
                    throw new DataAccessException("Too many MathModelSimLink found for bmKey=" + addtc_tsop.getBioModelKey() + " simContextKey=" + addtc_tsop.getSimContextKey());
                }
            } else {
                throw new DataAccessException("No BioModelSimcontextLink found for bmKey=" + addtc_tsop.getBioModelKey() + " simContextKey=" + addtc_tsop.getSimContextKey());
            }
            rset.close();
            // 
            BigDecimal tcKey = keyFactory.getUniqueBigDecimal(con);
            String annotation = addtc_tsop.getAnnotation();
            if (annotation != null) {
                annotation = TokenMangler.getSQLEscapedString(annotation);
            }
            stmt.executeUpdate("INSERT INTO " + TFTestCaseTable.table.getTableName() + " VALUES(" + tcKey.toString() + "," + addtc_tsop.getTestSuiteKey().toString() + ",NULL," + "'" + addtc_tsop.getTestCaseType() + "'" + "," + "'" + annotation + "'" + "," + "current_timestamp" + "," + bmSimContextLinkRef.toString() + ")");
            if (addtc_tsop.getAddTestCriteriaOPsBioModel() != null) {
                for (int i = 0; i < addtc_tsop.getAddTestCriteriaOPsBioModel().length; i += 1) {
                    // Set new TSKey,TCaseKey and do child OPs
                    AddTestCriteriaOPBioModel atcritOP = addtc_tsop.getAddTestCriteriaOPsBioModel()[i];
                    testSuiteOP(new AddTestCriteriaOPBioModel(tcKey, atcritOP.getBioModelSimKey(), atcritOP.getRegressionBioModelKey(), atcritOP.getRegressionBioModelSimKey(), atcritOP.getMaxAbsoluteError(), atcritOP.getMaxRelativeError(), atcritOP.getAddTestResultsOP()), con, user, keyFactory);
                }
            }
            changedTestSuiteKeys.add(addtc_tsop.getTestSuiteKey());
        } else if (tsop instanceof AddTestCasesOPMathModel) {
            AddTestCasesOPMathModel addtc_tsop = (AddTestCasesOPMathModel) tsop;
            BigDecimal tcKey = keyFactory.getUniqueBigDecimal(con);
            KeyValue mmKey = addtc_tsop.getMathModelKey();
            String annotation = addtc_tsop.getAnnotation();
            if (annotation != null) {
                annotation = TokenMangler.getSQLEscapedString(annotation);
            }
            stmt.executeUpdate("INSERT INTO " + TFTestCaseTable.table.getTableName() + " VALUES(" + tcKey.toString() + "," + addtc_tsop.getTestSuiteKey().toString() + "," + mmKey.toString() + "," + "'" + addtc_tsop.getTestCaseType() + "'" + "," + "'" + annotation + "'" + "," + "current_timestamp" + ",NULL)");
            if (addtc_tsop.getAddTestCriteriaOPsMathModel() != null) {
                for (int i = 0; i < addtc_tsop.getAddTestCriteriaOPsMathModel().length; i += 1) {
                    // Set new TSKey,TCaseKey and do child OPs
                    AddTestCriteriaOPMathModel atcritOP = addtc_tsop.getAddTestCriteriaOPsMathModel()[i];
                    testSuiteOP(new AddTestCriteriaOPMathModel(tcKey, atcritOP.getMathModelSimKey(), atcritOP.getRegressionMathModelKey(), atcritOP.getRegressionMathModelSimKey(), atcritOP.getMaxAbsoluteError(), atcritOP.getMaxRelativeError(), atcritOP.getAddTestResultsOP()), con, user, keyFactory);
                }
            }
            changedTestSuiteKeys.add(addtc_tsop.getTestSuiteKey());
        } else if (tsop instanceof RemoveTestCasesOP) {
            RemoveTestCasesOP removetc_tsop = (RemoveTestCasesOP) tsop;
            StringBuffer sb = new StringBuffer();
            for (int i = 0; i < removetc_tsop.getTestCasesKeys().length; i += 1) {
                if (i != 0) {
                    sb.append(",");
                }
                sb.append(removetc_tsop.getTestCasesKeys()[i].toString());
            }
            ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + " IN (" + sb.toString() + ")" + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
            while (rset.next()) {
                changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
            }
            rset.close();
            int numRowsUpdated = stmt.executeUpdate("DELETE FROM " + TFTestCaseTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getUnqualifiedColName() + " IN (" + sb.toString() + ")");
            if (numRowsUpdated != removetc_tsop.getTestCasesKeys().length) {
                throw new DataAccessException("Remove TestCase keys=" + sb.toString() + " from TSKey=" + removetc_tsop.getTestSuiteKey() + " removed row count=" + numRowsUpdated + " expected " + removetc_tsop.getTestCasesKeys().length);
            }
        } else if (tsop instanceof AddTestCriteriaOPMathModel) {
            AddTestCriteriaOPMathModel addtcrit_tsop = (AddTestCriteriaOPMathModel) tsop;
            BigDecimal tcritKey = keyFactory.getUniqueBigDecimal(con);
            BigDecimal tcKey = addtcrit_tsop.getTestCaseKey();
            KeyValue simKey = addtcrit_tsop.getMathModelSimKey();
            // Check that there is a single mathmodel associated with simkey and parentsimref is null
            sql = "SELECT " + MathModelSimulationLinkTable.table.id.getQualifiedColName() + " FROM " + MathModelSimulationLinkTable.table.getTableName() + "," + SimulationTable.table.getTableName() + " WHERE " + MathModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + simKey.toString() + " AND " + MathModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + " AND " + SimulationTable.table.getTableName() + "." + SimulationTable.versionParentSimRef_ColumnName + " IS NULL";
            ResultSet rset = stmt.executeQuery(sql);
            if (rset.next()) {
                if (rset.next()) {
                    throw new DataAccessException("Too many MathModelSimulationLink found for simKey=" + simKey);
                }
            } else {
                throw new DataAccessException("No MathModelSimulationLink found for simKey=" + simKey);
            }
            rset.close();
            // //
            // //Make sure TestCase type and regressionRef match
            // sql = "SELECT "+TFTestCaseTable.table.id.getQualifiedColName()+
            // " FROM "+TFTestCaseTable.table.getTableName()+
            // " WHERE "+
            // TFTestCaseTable.table.id.getQualifiedColName()+"="+tcKey.toString()+
            // " AND "+
            // TFTestCaseTable.table.tcSolutionType.getQualifiedColName()+
            // (regrSimKey != null?"=":"!=")+
            // "'"+cbit.vcell.numericstest.TestCaseNew.REGRESSION+"'";
            // rset = stmt.executeQuery(sql);
            // if(!rset.next()){
            // throw new DataAccessException("TestCase type not compatible with regressionSimKey");
            // }
            // rset.close();
            // 
            // 
            // Get simDataRef from simKey
            BigDecimal simDataRef = null;
            // sql =
            // "SELECT "+ResultSetMetaDataTable.table.id.getQualifiedColName()+
            // " FROM " +ResultSetMetaDataTable.table.getTableName()+
            // " WHERE "+
            // ResultSetMetaDataTable.table.simRef.getQualifiedColName()+"="+simKey.toString();
            // rset = stmt.executeQuery(sql);
            // if(rset.next()){
            // simDataRef = rset.getBigDecimal(MathModelSimulationLinkTable.table.id.getUnqualifiedColName());
            // if(rset.next()){
            // throw new DataAccessException("Too many ResultSetMetaData found for simKey="+simKey);
            // }
            // }
            // else{
            // throw new DataAccessException("No ResultSetMetaData found for simKey="+simKey);
            // }
            rset.close();
            // 
            // Insert TestCriteria
            sql = "INSERT INTO " + TFTestCriteriaTable.table.getTableName() + " VALUES(" + tcritKey.toString() + "," + tcKey.toString() + "," + simKey.toString() + "," + (simDataRef != null ? simDataRef.toString() : null) + "," + "NULL" + "," + (addtcrit_tsop.getMaxRelativeError() != null ? "TO_NUMBER('" + addtcrit_tsop.getMaxRelativeError().toString() + "')" : "null") + "," + (addtcrit_tsop.getMaxAbsoluteError() != null ? "TO_NUMBER('" + addtcrit_tsop.getMaxAbsoluteError().toString() + "')" : "null") + "," + "NULL,NULL," + "'" + TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT + "'" + ",null" + ")";
            stmt.executeUpdate(sql);
            if (addtcrit_tsop.getRegressionMathModelSimKey() != null) {
                testSuiteOP(new EditTestCriteriaOPMathModel(tcritKey, addtcrit_tsop.getRegressionMathModelKey(), addtcrit_tsop.getRegressionMathModelSimKey(), addtcrit_tsop.getMaxAbsoluteError(), addtcrit_tsop.getMaxRelativeError()), con, user, keyFactory);
            }
            if (addtcrit_tsop.getAddTestResultsOP() != null) {
                AddTestResultsOP atrOP = addtcrit_tsop.getAddTestResultsOP();
                // Set new TSKey,TCritKey and do child OPs
                testSuiteOP(new AddTestResultsOP(tcritKey, atrOP.getVariableComparisonSummaries()), con, user, keyFactory);
            }
            rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + tcritKey.toString() + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
            while (rset.next()) {
                changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
            }
            rset.close();
        } else if (tsop instanceof AddTestCriteriaOPBioModel) {
            AddTestCriteriaOPBioModel addtcrit_tsop = (AddTestCriteriaOPBioModel) tsop;
            BigDecimal tcritKey = keyFactory.getUniqueBigDecimal(con);
            BigDecimal tcKey = addtcrit_tsop.getTestCaseKey();
            KeyValue simKey = addtcrit_tsop.getBioModelSimKey();
            // Check that there is a single biomodel associated with simkey and parentsimref is null
            sql = "SELECT " + BioModelSimulationLinkTable.table.id.getQualifiedColName() + " FROM " + BioModelSimulationLinkTable.table.getTableName() + "," + SimulationTable.table.getTableName() + " WHERE " + BioModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + simKey.toString() + " AND " + BioModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + " AND " + SimulationTable.table.getTableName() + "." + SimulationTable.versionParentSimRef_ColumnName + " IS NULL";
            ResultSet rset = stmt.executeQuery(sql);
            if (rset.next()) {
                if (rset.next()) {
                    throw new DataAccessException("Too many BioModelSimulationLink found for simKey=" + simKey);
                }
            } else {
                throw new DataAccessException("No BioModelSimulationLink found for simKey=" + simKey);
            }
            rset.close();
            // //
            // //Make sure TestCase type and regressionRef match
            // sql = "SELECT "+TFTestCaseTable.table.id.getQualifiedColName()+
            // " FROM "+TFTestCaseTable.table.getTableName()+
            // " WHERE "+
            // TFTestCaseTable.table.id.getQualifiedColName()+"="+tcKey.toString()+
            // " AND "+
            // TFTestCaseTable.table.tcSolutionType.getQualifiedColName()+
            // (regrSimKey != null?"=":"!=")+
            // "'"+cbit.vcell.numericstest.TestCaseNew.REGRESSION+"'";
            // rset = stmt.executeQuery(sql);
            // if(!rset.next()){
            // throw new DataAccessException("TestCase type not compatible with regressionSimKey");
            // }
            // rset.close();
            // 
            // 
            // Get simDataRef from simKey
            BigDecimal simDataRef = null;
            // sql =
            // "SELECT "+ResultSetMetaDataTable.table.id.getQualifiedColName()+
            // " FROM " +ResultSetMetaDataTable.table.getTableName()+
            // " WHERE "+
            // ResultSetMetaDataTable.table.simRef.getQualifiedColName()+"="+simKey.toString();
            // rset = stmt.executeQuery(sql);
            // if(rset.next()){
            // simDataRef = rset.getBigDecimal(BioModelSimulationLinkTable.table.id.getUnqualifiedColName());
            // if(rset.next()){
            // throw new DataAccessException("Too many ResultSetMetaData found for simKey="+simKey);
            // }
            // }
            // else{
            // throw new DataAccessException("No ResultSetMetaData found for simKey="+simKey);
            // }
            rset.close();
            // 
            // Insert TestCriteria
            sql = "INSERT INTO " + TFTestCriteriaTable.table.getTableName() + " VALUES(" + tcritKey.toString() + "," + tcKey.toString() + "," + simKey.toString() + "," + (simDataRef != null ? simDataRef.toString() : null) + "," + "null" + "," + (addtcrit_tsop.getMaxRelativeError() != null ? "TO_NUMBER('" + addtcrit_tsop.getMaxRelativeError().toString() + "')" : "null") + "," + (addtcrit_tsop.getMaxAbsoluteError() != null ? "TO_NUMBER('" + addtcrit_tsop.getMaxAbsoluteError().toString() + "')" : "null") + "," + "NULL,NULL," + "'" + TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT + "'" + ",null" + ")";
            stmt.executeUpdate(sql);
            if (addtcrit_tsop.getRegressionBioModelSimKey() != null) {
                testSuiteOP(new EditTestCriteriaOPBioModel(tcritKey, addtcrit_tsop.getRegressionBioModelKey(), addtcrit_tsop.getRegressionBioModelSimKey(), addtcrit_tsop.getMaxAbsoluteError(), addtcrit_tsop.getMaxRelativeError()), con, user, keyFactory);
            }
            if (addtcrit_tsop.getAddTestResultsOP() != null) {
                AddTestResultsOP atrOP = addtcrit_tsop.getAddTestResultsOP();
                // Set new TSKey,TCritKey and do child OPs
                testSuiteOP(new AddTestResultsOP(tcritKey, atrOP.getVariableComparisonSummaries()), con, user, keyFactory);
            }
            rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + tcritKey.toString() + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
            while (rset.next()) {
                changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
            }
            rset.close();
        } else if (tsop instanceof RemoveTestCriteriaOP) {
            RemoveTestCriteriaOP removetcrit_tsop = (RemoveTestCriteriaOP) tsop;
            StringBuffer sb = new StringBuffer();
            for (int i = 0; i < removetcrit_tsop.getTestCriterias().length; i += 1) {
                if (i != 0) {
                    sb.append(",");
                }
                sb.append(removetcrit_tsop.getTestCriterias()[i].getTCritKey().toString());
            }
            ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + " IN (" + sb.toString() + ")" + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
            while (rset.next()) {
                changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
            }
            rset.close();
            int numRowsUpdated = stmt.executeUpdate("DELETE FROM " + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCriteriaTable.table.id.getUnqualifiedColName() + " IN (" + sb.toString() + ")");
            if (numRowsUpdated != removetcrit_tsop.getTestCriterias().length) {
                throw new DataAccessException("Remove TestCriteria keys=" + sb.toString() + " removed row count=" + numRowsUpdated + " expected " + removetcrit_tsop.getTestCriterias().length);
            }
        } else if (tsop instanceof RemoveTestSuiteOP) {
            RemoveTestSuiteOP removets_tsop = (RemoveTestSuiteOP) tsop;
            int numRowsUpdated = stmt.executeUpdate("DELETE FROM " + TFTestSuiteTable.table.getTableName() + " WHERE " + TFTestSuiteTable.table.id.getUnqualifiedColName() + "=" + removets_tsop.getTestSuiteKey().toString());
            if (numRowsUpdated != 1) {
                throw new DataAccessException("Remove SINGLE TestSuite - key=" + removets_tsop.getTestSuiteKey().toString() + " removed row count=" + numRowsUpdated);
            }
            changedTestSuiteKeys.add(removets_tsop.getTestSuiteKey());
        } else if (tsop instanceof AddTestResultsOP) {
            AddTestResultsOP addtr_tsop = (AddTestResultsOP) tsop;
            VariableComparisonSummary[] vcs = addtr_tsop.getVariableComparisonSummaries();
            if (vcs == null || vcs.length == 0) {
                throw new DataAccessException(RemoveTestCasesOP.class.getName() + " had no TestResults");
            }
            for (int i = 0; i < vcs.length; i += 1) {
                if (vcs[i] == null) {
                    throw new DataAccessException(RemoveTestCasesOP.class.getName() + " Array element was null");
                }
            }
            ResultSet rset = stmt.executeQuery("SELECT " + TFTestResultTable.table.id.getUnqualifiedColName() + " FROM " + TFTestResultTable.table.getTableName() + " WHERE " + TFTestResultTable.table.testCriteriaRef.getUnqualifiedColName() + "=" + addtr_tsop.getTestCriteriaKey().toString());
            if (rset.next()) {
                throw new DataAccessException("AddTestResultsOP Criteria key=" + addtr_tsop.getTestCriteriaKey() + " has results");
            }
            rset.close();
            for (int i = 0; i < vcs.length; i += 1) {
                sql = "INSERT INTO " + TFTestResultTable.table.getTableName() + " VALUES(" + "NEWSEQ.NEXTVAL" + "," + addtr_tsop.getTestCriteriaKey().toString() + "," + "'" + vcs[i].getName() + "'" + "," + "TO_NUMBER('" + vcs[i].getAbsoluteError() + "')" + "," + "TO_NUMBER('" + vcs[i].getRelativeError() + "')" + "," + "TO_NUMBER('" + vcs[i].getMaxRef() + "')" + "," + "TO_NUMBER('" + vcs[i].getMinRef() + "')" + "," + "TO_NUMBER('" + vcs[i].getMeanSqError() + "')" + "," + "TO_NUMBER('" + vcs[i].getTimeAbsoluteError() + "')" + "," + "TO_NUMBER('" + vcs[i].getIndexAbsoluteError() + "')" + "," + "TO_NUMBER('" + vcs[i].getTimeRelativeError() + "')" + "," + "TO_NUMBER('" + vcs[i].getIndexRelativeError() + "')" + ")";
                stmt.executeUpdate(sql);
            }
            rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + addtr_tsop.getTestCriteriaKey().toString() + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
            while (rset.next()) {
                changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
            }
            rset.close();
        } else if (tsop instanceof RemoveTestResultsOP) {
            RemoveTestResultsOP removetr_tsop = (RemoveTestResultsOP) tsop;
            StringBuffer sb = new StringBuffer();
            for (int i = 0; i < removetr_tsop.getTestCriteriaKeys().length; i += 1) {
                if (i != 0) {
                    sb.append(",");
                }
                sb.append(removetr_tsop.getTestCriteriaKeys()[i].toString());
                stmt.executeUpdate("DELETE FROM " + TFTestResultTable.table.getTableName() + " WHERE " + TFTestResultTable.table.testCriteriaRef.getUnqualifiedColName() + "=" + removetr_tsop.getTestCriteriaKeys()[i].toString());
            }
            ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + " IN (" + sb.toString() + ")" + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
            while (rset.next()) {
                changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
            }
            rset.close();
        } else if (tsop instanceof EditTestCriteriaOPReportStatus) {
            EditTestCriteriaOPReportStatus edittcrit_tsop = (EditTestCriteriaOPReportStatus) tsop;
            BigDecimal tcritKey = edittcrit_tsop.getTestCriteriaKey();
            if (tcritKey == null) {
                throw new DataAccessException(tsop.getClass().getName() + " had no TestCriteria keys");
            }
            String newRS = edittcrit_tsop.getNewReportStatus();
            if (newRS == null || (!newRS.equals(TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_FAILEDVARS) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_NODATA) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_NOREFREGR) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_PASSED) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_RPERROR) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_SIMFAILED) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_SIMRUNNING) && !newRS.equals(TestCriteriaNew.TCRIT_STATUS_SIMNOTRUNFAILDONE))) {
                throw new DataAccessException("Unsupported ReportStatus=" + edittcrit_tsop.getNewReportStatus());
            }
            String reportStatusMessage = edittcrit_tsop.getNewReportStatusMessage();
            if (reportStatusMessage != null) {
                reportStatusMessage = TokenMangler.getSQLEscapedString(reportStatusMessage);
                reportStatusMessage = reportStatusMessage.substring(0, Math.min(TFTestCriteriaTable.MAX_MESSAGE_SIZE, reportStatusMessage.length()));
            }
            stmt.executeUpdate("UPDATE " + TFTestCriteriaTable.table.getTableName() + " SET " + TFTestCriteriaTable.table.reportStatus.getQualifiedColName() + "=" + (newRS != null ? "'" + newRS + "'" : "null") + "," + TFTestCriteriaTable.table.reportMessage.getQualifiedColName() + "=" + (reportStatusMessage != null ? "'" + reportStatusMessage + "'" : "null") + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + tcritKey.toString());
            if (newRS.equals(TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT)) {
                testSuiteOP(new RemoveTestResultsOP(new BigDecimal[] { tcritKey }), con, user, keyFactory);
            }
            ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + " = " + tcritKey.toString() + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
            while (rset.next()) {
                changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
            }
            rset.close();
        } else if (tsop instanceof EditTestCriteriaOPMathModel) {
            EditTestCriteriaOPMathModel edittcrit_tsop = (EditTestCriteriaOPMathModel) tsop;
            BigDecimal tcritKey = edittcrit_tsop.getTestCriteriaKey();
            if (tcritKey == null) {
                throw new DataAccessException(tsop.getClass().getName() + " had no TestCriteria keys");
            }
            if ((edittcrit_tsop.getMathModelRegressionRef() == null && edittcrit_tsop.getMathModelRegressionSimRef() != null) || (edittcrit_tsop.getMathModelRegressionRef() != null && edittcrit_tsop.getMathModelRegressionSimRef() == null)) {
                throw new DataAccessException(tsop.getClass().getName() + " MathRef and SimRef must both be null or both not null");
            }
            Double maxAbsError = edittcrit_tsop.getNewMaxAbsError();
            Double maxRelError = edittcrit_tsop.getNewMaxRelError();
            KeyValue regrSimRef = edittcrit_tsop.getMathModelRegressionSimRef();
            // Convert regrSimKey to regrMathModelSimLinkKey
            BigDecimal regrMathModelSimLink = null;
            if (regrSimRef != null) {
                sql = "SELECT " + MathModelSimulationLinkTable.table.id.getQualifiedColName() + " FROM " + MathModelSimulationLinkTable.table.getTableName() + " WHERE " + MathModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + regrSimRef.toString();
                ResultSet rset = stmt.executeQuery(sql);
                if (rset.next()) {
                    regrMathModelSimLink = rset.getBigDecimal(MathModelSimulationLinkTable.table.id.getUnqualifiedColName());
                    if (rset.next()) {
                        throw new DataAccessException("Too many MathModelSimLink found for regrSimKey=" + regrSimRef);
                    }
                } else {
                    throw new DataAccessException("No MathModelSimLink found for regrSimKey=" + regrSimRef);
                }
                rset.close();
            }
            stmt.executeUpdate("UPDATE " + TFTestCriteriaTable.table.getTableName() + " SET " + TFTestCriteriaTable.table.maxAbsError.getQualifiedColName() + "=" + (maxAbsError != null ? "TO_NUMBER(" + maxAbsError.toString() + ")" : "null") + "," + TFTestCriteriaTable.table.maxRelError.getQualifiedColName() + "=" + (maxRelError != null ? "TO_NUMBER(" + maxRelError.toString() + ")" : "null") + "," + TFTestCriteriaTable.table.regressionMMSimRef.getQualifiedColName() + "=" + (regrMathModelSimLink != null ? regrMathModelSimLink.toString() : "null") + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + tcritKey.toString());
            testSuiteOP(new EditTestCriteriaOPReportStatus(tcritKey, TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT, null), con, user, keyFactory);
            ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + " = " + tcritKey.toString() + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
            while (rset.next()) {
                changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
            }
            rset.close();
        } else if (tsop instanceof EditTestCriteriaOPBioModel) {
            EditTestCriteriaOPBioModel edittcrit_tsop = (EditTestCriteriaOPBioModel) tsop;
            BigDecimal tcritKey = edittcrit_tsop.getTestCriteriaKey();
            if (tcritKey == null) {
                throw new DataAccessException(tsop.getClass().getName() + " had no TestCriteria keys");
            }
            if ((edittcrit_tsop.getBioModelRegressionRef() == null && edittcrit_tsop.getBioModelRegressionSimRef() != null) || (edittcrit_tsop.getBioModelRegressionRef() != null && edittcrit_tsop.getBioModelRegressionSimRef() == null)) {
                throw new DataAccessException(tsop.getClass().getName() + " ApplicationRef and SimRef must both be null or both not null");
            }
            Double maxAbsError = edittcrit_tsop.getNewMaxAbsError();
            Double maxRelError = edittcrit_tsop.getNewMaxRelError();
            BigDecimal bmscAppKey = null;
            BigDecimal bmsltSimKey = null;
            final String BMSLT = "BMSLT";
            if (edittcrit_tsop.getBioModelRegressionSimRef() != null) {
                sql = "SELECT " + BioModelSimContextLinkTable.table.id.getQualifiedColName() + "," + BioModelSimulationLinkTable.table.id.getQualifiedColName() + " " + BMSLT + " FROM " + BioModelSimContextLinkTable.table.getTableName() + "," + SimContextTable.table.getTableName() + "," + SimulationTable.table.getTableName() + "," + BioModelSimulationLinkTable.table.getTableName() + " WHERE " + BioModelSimContextLinkTable.table.bioModelRef.getQualifiedColName() + "=" + edittcrit_tsop.getBioModelRegressionRef() + " AND " + BioModelSimContextLinkTable.table.simContextRef.getQualifiedColName() + "=" + SimContextTable.table.id.getQualifiedColName() + " AND " + SimContextTable.table.mathRef.getQualifiedColName() + "=" + SimulationTable.table.mathRef.getQualifiedColName() + " AND " + SimulationTable.table.id.getQualifiedColName() + "=" + edittcrit_tsop.getBioModelRegressionSimRef().toString() + " AND " + BioModelSimulationLinkTable.table.bioModelRef.getQualifiedColName() + " = " + BioModelSimContextLinkTable.table.bioModelRef.getQualifiedColName() + " AND " + BioModelSimulationLinkTable.table.simRef.getQualifiedColName() + " = " + SimulationTable.table.id.getQualifiedColName();
                ResultSet rset = stmt.executeQuery(sql);
                if (rset.next()) {
                    bmscAppKey = rset.getBigDecimal(BioModelSimContextLinkTable.table.id.getUnqualifiedColName());
                    bmsltSimKey = rset.getBigDecimal(BMSLT);
                    if (rset.next()) {
                        throw new DataAccessException("Too many ResultSetMetaData found for simKey=" + edittcrit_tsop.getBioModelRegressionSimRef());
                    }
                }
                rset.close();
            }
            stmt.executeUpdate("UPDATE " + TFTestCriteriaTable.table.getTableName() + " SET " + TFTestCriteriaTable.table.maxAbsError.getQualifiedColName() + "=" + (maxAbsError != null ? "TO_NUMBER(" + maxAbsError.toString() + ")" : "null") + "," + TFTestCriteriaTable.table.maxRelError.getQualifiedColName() + "=" + (maxRelError != null ? "TO_NUMBER(" + maxRelError.toString() + ")" : "null") + "," + TFTestCriteriaTable.table.regressionBMAPPRef.getQualifiedColName() + "=" + (bmscAppKey != null ? bmscAppKey.toString() : "NULL") + "," + TFTestCriteriaTable.table.regressionBMSimRef.getQualifiedColName() + "=" + (bmsltSimKey != null ? bmsltSimKey.toString() : "NULL") + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + tcritKey.toString());
            testSuiteOP(new EditTestCriteriaOPReportStatus(tcritKey, TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT, null), con, user, keyFactory);
            ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + " = " + tcritKey.toString() + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
            while (rset.next()) {
                changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
            }
            rset.close();
        } else if (tsop instanceof ChangeTestCriteriaErrorLimitOP) {
            ChangeTestCriteriaErrorLimitOP edittcrit_tsop = (ChangeTestCriteriaErrorLimitOP) tsop;
            BigDecimal[] tcritKeyArr = edittcrit_tsop.getTestCriteriaKeys();
            double[] maxAbsErrorArr = edittcrit_tsop.getAbsErrorLimits();
            double[] maxRelErrorArr = edittcrit_tsop.getRelErrorLimits();
            if (tcritKeyArr == null || (maxAbsErrorArr != null && maxAbsErrorArr.length != tcritKeyArr.length) || (maxAbsErrorArr != null && maxRelErrorArr.length != tcritKeyArr.length)) {
                throw new DataAccessException(tsop.getClass().getName() + " Improper arguments.");
            }
            StringBuffer tcritList = new StringBuffer();
            for (int i = 0; i < tcritKeyArr.length; i++) {
                if (i != 0) {
                    tcritList.append(",");
                }
                tcritList.append(tcritKeyArr[i]);
                stmt.executeUpdate("UPDATE " + TFTestCriteriaTable.table.getTableName() + " SET " + (maxAbsErrorArr != null ? TFTestCriteriaTable.table.maxAbsError.getQualifiedColName() + "=" + maxAbsErrorArr[i] : "") + (maxAbsErrorArr != null && maxRelErrorArr != null ? "," : "") + (maxRelErrorArr != null ? TFTestCriteriaTable.table.maxRelError.getQualifiedColName() + "=" + maxRelErrorArr[i] : "") + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + tcritKeyArr[i].toString());
                testSuiteOP(new EditTestCriteriaOPReportStatus(tcritKeyArr[i], TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT, null), con, user, keyFactory);
            }
            ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.id.getQualifiedColName() + " IN (" + tcritList.toString() + ")" + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
            while (rset.next()) {
                changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
            }
        } else if (tsop instanceof EditTestCasesOP) {
            EditTestCasesOP edittc_tsop = (EditTestCasesOP) tsop;
            BigDecimal[] tcaseKeys = edittc_tsop.getTestCasesKeys();
            String[] annots = edittc_tsop.getNewAnnotations();
            boolean[] newSteadyStates = edittc_tsop.getNewSteadyStates();
            if (tcaseKeys == null || tcaseKeys.length == 0) {
                throw new DataAccessException(tsop.getClass().getName() + " had no TestCase keys");
            }
            StringBuffer sb = new StringBuffer();
            for (int i = 0; i < tcaseKeys.length; i += 1) {
                if (i != 0) {
                    sb.append(",");
                }
                sb.append(tcaseKeys[i].toString());
                if (annots != null) {
                    String annotation = annots[i];
                    if (annotation != null) {
                        if (annotation.length() == 0) {
                            annotation = null;
                        } else {
                            annotation = TokenMangler.getSQLEscapedString(annotation);
                        }
                    }
                    stmt.executeUpdate("UPDATE " + TFTestCaseTable.table.getTableName() + " SET " + TFTestCaseTable.table.tcAnnotation.getQualifiedColName() + "=" + (annotation == null ? "NULL" : "'" + annotation + "'") + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + tcaseKeys[i].toString());
                }
                if (newSteadyStates != null) {
                    // Make sure the change is for EXACT type
                    ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestCriteriaTable.table.id.getQualifiedColName() + " FROM " + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + tcaseKeys[i].toString() + " AND " + "(" + TFTestCaseTable.table.tcSolutionType.getQualifiedColName() + "='" + TestCaseNew.EXACT + "'" + " OR " + TFTestCaseTable.table.tcSolutionType.getQualifiedColName() + "='" + TestCaseNew.EXACT_STEADY + "'" + ")" + " AND " + TFTestCriteriaTable.table.testCaseRef + "=" + TFTestCaseTable.table.id.getQualifiedColName());
                    // Get TestCriteria Keys for Test case
                    Vector<BigDecimal> tcritKeyV = new Vector<BigDecimal>();
                    while (rset.next()) {
                        tcritKeyV.add(rset.getBigDecimal(TFTestCriteriaTable.table.id.getUnqualifiedColName()));
                    }
                    if (tcritKeyV.size() == 0) {
                        throw new DataAccessException("Updating SteadyState on TestCase that is not EXACT is NOT allowed.");
                    }
                    rset.close();
                    // Change SteadyState type for TestCase
                    boolean newSteadyState = newSteadyStates[i];
                    stmt.executeUpdate("UPDATE " + TFTestCaseTable.table.getTableName() + " SET " + TFTestCaseTable.table.tcSolutionType.getQualifiedColName() + "=" + (newSteadyState ? "'" + TestCaseNew.EXACT_STEADY + "'" : "'" + TestCaseNew.EXACT + "'") + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + "=" + tcaseKeys[i].toString());
                    // Change Report status
                    for (int j = 0; j < tcritKeyV.size(); j++) {
                        EditTestCriteriaOPReportStatus etcors = new EditTestCriteriaOPReportStatus(tcritKeyV.elementAt(j), TestCriteriaNew.TCRIT_STATUS_NEEDSREPORT, null);
                        testSuiteOP(etcors, con, user, keyFactory);
                    }
                }
            }
            ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + " WHERE " + TFTestCaseTable.table.id.getQualifiedColName() + " IN (" + sb.toString() + ")" + " AND " + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + "=" + TFTestSuiteTable.table.id.getQualifiedColName());
            while (rset.next()) {
                changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
            }
            rset.close();
        } else if (tsop instanceof EditTestSuiteOP) {
            EditTestSuiteOP editts_tsop = (EditTestSuiteOP) tsop;
            BigDecimal[] tsKeys = editts_tsop.getTestSuiteKeys();
            String[] annots = editts_tsop.getNewAnnotations();
            if (tsKeys == null || tsKeys.length == 0) {
                throw new DataAccessException(tsop.getClass().getName() + " had no TestSuite keys");
            }
            StringBuffer sb = new StringBuffer();
            for (int i = 0; i < tsKeys.length; i += 1) {
                if (i != 0) {
                    sb.append(",");
                }
                sb.append(tsKeys[i].toString());
                if (editts_tsop.isLock() != null) {
                    stmt.executeUpdate("UPDATE " + TFTestSuiteTable.table.getTableName() + " SET " + TFTestSuiteTable.table.isLocked.getQualifiedColName() + "= 1" + " WHERE " + TFTestSuiteTable.table.id.getQualifiedColName() + "=" + tsKeys[i].toString());
                } else {
                    if (annots != null) {
                        String annotation = annots[i];
                        if (annotation != null) {
                            if (annotation.length() == 0) {
                                annotation = null;
                            } else {
                                annotation = TokenMangler.getSQLEscapedString(annotation);
                            }
                        }
                        stmt.executeUpdate("UPDATE " + TFTestSuiteTable.table.getTableName() + " SET " + TFTestSuiteTable.table.tsAnnotation.getQualifiedColName() + "=" + (annotation == null ? "NULL" : "'" + annotation + "'") + " WHERE " + TFTestSuiteTable.table.id.getQualifiedColName() + "=" + tsKeys[i].toString());
                    }
                }
            }
            ResultSet rset = stmt.executeQuery("SELECT DISTINCT " + TFTestSuiteTable.table.id.getQualifiedColName() + " FROM " + TFTestSuiteTable.table.getTableName() + " WHERE " + TFTestSuiteTable.table.id.getQualifiedColName() + " IN (" + sb.toString() + ")");
            while (rset.next()) {
                changedTestSuiteKeys.add(rset.getBigDecimal(TFTestSuiteTable.table.id.getUnqualifiedColName()));
            }
            rset.close();
        } else if (tsop instanceof QueryTestCriteriaCrossRefOP) {
            QueryTestCriteriaCrossRefOP qtcritxr_tsop = (QueryTestCriteriaCrossRefOP) tsop;
            Vector<TestCriteriaCrossRefOPResults.CrossRefData> crossRefV = new Vector<TestCriteriaCrossRefOPResults.CrossRefData>();
            // 
            // BioModel query
            // 
            String TSID = "tsid";
            String TCID = "tcid";
            String TCRID = "tcrid";
            String BMNAME = "bmname";
            String SCNAME = "scname";
            String SIMNAME = "simname";
            String TSALT = "TSALT";
            String TCALT = "TCALT";
            String TCRALT = "TCRALT";
            String BSCALT = "BSCALT";
            String MMSIMALT = "MMSIMALT";
            String MODELID = "MODELID";
            String REFTSUITEKEY = "REFTSUITEKEY";
            String REFTCASEKEY = "REFTCASEKEY";
            String REFTCRITKEY = "REFTCRITKEY";
            // String TCRALT2 = "TCRALT2";
            // String SIM2 = "SIM2";
            sql = "SELECT DISTINCT " + TFTestSuiteTable.table.tsVersion.getQualifiedColName() + "," + TFTestSuiteTable.table.id.getQualifiedColName() + " " + TSID + "," + TFTestCaseTable.table.id.getQualifiedColName() + " " + TCID + "," + TFTestCriteriaTable.table.id.getQualifiedColName() + " " + TCRID + "," + BioModelTable.table.name.getQualifiedColName() + " " + BMNAME + "," + SimContextTable.table.name.getQualifiedColName() + " " + SCNAME + "," + SimulationTable.table.name.getQualifiedColName() + " " + SIMNAME + "," + TFTestCriteriaTable.table.maxAbsError.getQualifiedColName() + "," + TFTestCriteriaTable.table.maxRelError.getQualifiedColName() + "," + TFTestResultTable.table.varName.getQualifiedColName() + "," + TFTestResultTable.table.minRef.getQualifiedColName() + "," + TFTestResultTable.table.maxRef.getQualifiedColName() + "," + TFTestResultTable.table.absError.getQualifiedColName() + "," + TFTestResultTable.table.relError.getQualifiedColName() + "," + TFTestResultTable.table.meanSqrError.getQualifiedColName() + "," + TFTestResultTable.table.timeAbsError.getQualifiedColName() + "," + TFTestResultTable.table.indexAbsError.getQualifiedColName() + "," + TFTestResultTable.table.timeRelError.getQualifiedColName() + "," + TFTestResultTable.table.indexRelError.getQualifiedColName() + "," + TSALT + "." + TFTestSuiteTable.table.tsVersion.getUnqualifiedColName() + "," + BSCALT + "." + BioModelSimContextLinkTable.table.bioModelRef.getUnqualifiedColName() + "," + TFTestCaseTable.table.tcSolutionType.getQualifiedColName() + "," + BioModelTable.table.id.getQualifiedColName() + " " + MODELID + "," + TSALT + "." + TFTestSuiteTable.table.id.getUnqualifiedColName() + " " + REFTSUITEKEY + "," + TCALT + "." + TFTestCaseTable.table.id.getUnqualifiedColName() + " " + REFTCASEKEY + "," + "NULL " + // TCRALT2+"."+TFTestCriteriaTable.table.id.getUnqualifiedColName() +" "+REFTCRITKEY +
            REFTCRITKEY + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + "," + TFTestResultTable.table.getTableName() + "," + BioModelSimContextLinkTable.table.getTableName() + "," + BioModelTable.table.getTableName() + "," + SimContextTable.table.getTableName() + "," + SimulationTable.table.getTableName() + "," + BioModelSimulationLinkTable.table.getTableName() + "," + TFTestSuiteTable.table.getTableName() + " " + TSALT + "," + TFTestCaseTable.table.getTableName() + " " + TCALT + "," + TFTestCriteriaTable.table.getTableName() + " " + TCRALT + "," + BioModelSimContextLinkTable.table.getTableName() + " " + BSCALT + // ","+TFTestCriteriaTable.table.getTableName()+" "+TCRALT2+
            " WHERE " + TFTestSuiteTable.table.id.getQualifiedColName() + "=" + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + "=" + TFTestCaseTable.table.id.getQualifiedColName() + " AND " + TFTestResultTable.table.testCriteriaRef.getQualifiedColName() + "(+)" + "=" + TFTestCriteriaTable.table.id.getQualifiedColName() + (qtcritxr_tsop.getVarName() != null ? " AND " + TFTestResultTable.table.varName.getQualifiedColName() + "(+)" + "=" + "'" + qtcritxr_tsop.getVarName() + "'" : "") + " AND " + TFTestCaseTable.table.bmAppRef.getQualifiedColName() + "=" + BioModelSimContextLinkTable.table.id.getQualifiedColName() + " AND " + BioModelSimContextLinkTable.table.bioModelRef.getQualifiedColName() + "=" + BioModelTable.table.id.getQualifiedColName() + " AND " + BioModelSimContextLinkTable.table.simContextRef.getQualifiedColName() + "=" + SimContextTable.table.id.getQualifiedColName() + " AND " + BioModelSimulationLinkTable.table.bioModelRef.getQualifiedColName() + "=" + BioModelTable.table.id.getQualifiedColName() + " AND " + BioModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + " AND " + BioModelTable.table.versionBranchID.getQualifiedColName() + "=" + "(" + "SELECT DISTINCT " + BioModelTable.table.versionBranchID.getQualifiedColName() + " FROM " + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + "," + BioModelSimContextLinkTable.table.getTableName() + "," + BioModelTable.table.getTableName() + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + qtcritxr_tsop.getTestCriterium() + " AND " + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + "=" + TFTestCaseTable.table.id.getQualifiedColName() + " AND " + TFTestCaseTable.table.bmAppRef.getQualifiedColName() + "=" + BioModelSimContextLinkTable.table.id.getQualifiedColName() + " AND " + BioModelSimContextLinkTable.table.bioModelRef.getQualifiedColName() + "=" + BioModelTable.table.id.getQualifiedColName() + ")" + " AND " + SimContextTable.table.name.getQualifiedColName() + "=" + "(" + "SELECT DISTINCT " + SimContextTable.table.name.getQualifiedColName() + " FROM " + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + "," + BioModelSimContextLinkTable.table.getTableName() + "," + SimContextTable.table.getTableName() + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + qtcritxr_tsop.getTestCriterium() + " AND " + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + "=" + TFTestCaseTable.table.id.getQualifiedColName() + " AND " + TFTestCaseTable.table.bmAppRef.getQualifiedColName() + "=" + BioModelSimContextLinkTable.table.id.getQualifiedColName() + " AND " + BioModelSimContextLinkTable.table.simContextRef.getQualifiedColName() + "=" + SimContextTable.table.id.getQualifiedColName() + ")" + " AND " + SimulationTable.table.name.getQualifiedColName() + "=" + "(" + "SELECT DISTINCT " + SimulationTable.table.name.getQualifiedColName() + " FROM " + TFTestCriteriaTable.table.getTableName() + "," + SimulationTable.table.getTableName() + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + qtcritxr_tsop.getTestCriterium() + " AND " + TFTestCriteriaTable.table.simulationRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + ")" + // reference info
            " AND " + TSALT + "." + TFTestSuiteTable.table.id.getUnqualifiedColName() + "(+)" + "=" + TCALT + "." + TFTestCaseTable.table.testSuiteRef.getUnqualifiedColName() + " AND " + BSCALT + "." + BioModelSimContextLinkTable.table.id.getUnqualifiedColName() + "(+)" + "=" + TCRALT + "." + TFTestCriteriaTable.table.regressionBMAPPRef.getUnqualifiedColName() + " AND " + TCALT + "." + TFTestCaseTable.table.bmAppRef.getUnqualifiedColName() + "(+)" + "=" + TCRALT + "." + TFTestCriteriaTable.table.regressionBMAPPRef.getUnqualifiedColName() + " AND " + TCRALT + "." + TFTestCriteriaTable.table.id.getUnqualifiedColName() + "=" + TFTestCriteriaTable.table.id.getQualifiedColName() + // SIM2+"."+SimulationTable.table.name.getUnqualifiedColName()+"="+SimulationTable.table.name.getQualifiedColName()+
            " ORDER BY " + TSID;
            ResultSet rset = stmt.executeQuery(sql);
            while (rset.next()) {
                crossRefV.add(new TestCriteriaCrossRefOPResults.CrossRefData(rset, true));
            }
            rset.close();
            // 
            // MathModel query
            // 
            String MMNAME = "mmname";
            sql = "SELECT DISTINCT " + TFTestSuiteTable.table.tsVersion.getQualifiedColName() + "," + TFTestSuiteTable.table.id.getQualifiedColName() + " " + TSID + "," + TFTestCaseTable.table.id.getQualifiedColName() + " " + TCID + "," + TFTestCriteriaTable.table.id.getQualifiedColName() + " " + TCRID + "," + MathModelTable.table.name.getQualifiedColName() + " " + MMNAME + "," + SimulationTable.table.name.getQualifiedColName() + " " + SIMNAME + "," + TFTestCriteriaTable.table.maxAbsError.getQualifiedColName() + "," + TFTestCriteriaTable.table.maxRelError.getQualifiedColName() + "," + TFTestResultTable.table.varName.getQualifiedColName() + "," + TFTestResultTable.table.minRef.getQualifiedColName() + "," + TFTestResultTable.table.maxRef.getQualifiedColName() + "," + TFTestResultTable.table.absError.getQualifiedColName() + "," + TFTestResultTable.table.relError.getQualifiedColName() + "," + TFTestResultTable.table.meanSqrError.getQualifiedColName() + "," + TFTestResultTable.table.timeAbsError.getQualifiedColName() + "," + TFTestResultTable.table.indexAbsError.getQualifiedColName() + "," + TFTestResultTable.table.timeRelError.getQualifiedColName() + "," + TFTestResultTable.table.indexRelError.getQualifiedColName() + "," + TSALT + "." + TFTestSuiteTable.table.tsVersion.getUnqualifiedColName() + "," + MMSIMALT + "." + MathModelSimulationLinkTable.table.mathModelRef.getUnqualifiedColName() + "," + TFTestCaseTable.table.tcSolutionType.getQualifiedColName() + "," + MathModelTable.table.id.getQualifiedColName() + " " + MODELID + "," + TSALT + "." + TFTestSuiteTable.table.id.getUnqualifiedColName() + " " + REFTSUITEKEY + "," + TCALT + "." + TFTestCaseTable.table.id.getUnqualifiedColName() + " " + REFTCASEKEY + "," + "NULL " + // TCRALT2+"."+TFTestCriteriaTable.table.id.getUnqualifiedColName() +" "+REFTCRITKEY +
            REFTCRITKEY + " FROM " + TFTestSuiteTable.table.getTableName() + "," + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + "," + TFTestResultTable.table.getTableName() + "," + MathModelTable.table.getTableName() + "," + SimulationTable.table.getTableName() + "," + MathModelSimulationLinkTable.table.getTableName() + "," + TFTestSuiteTable.table.getTableName() + " " + TSALT + "," + TFTestCaseTable.table.getTableName() + " " + TCALT + "," + TFTestCriteriaTable.table.getTableName() + " " + TCRALT + "," + MathModelSimulationLinkTable.table.getTableName() + " " + MMSIMALT + // ","+TFTestCriteriaTable.table.getTableName()+" "+TCRALT2+
            " WHERE " + TFTestSuiteTable.table.id.getQualifiedColName() + "=" + TFTestCaseTable.table.testSuiteRef.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + "=" + TFTestCaseTable.table.id.getQualifiedColName() + " AND " + TFTestResultTable.table.testCriteriaRef.getQualifiedColName() + "(+)" + "=" + TFTestCriteriaTable.table.id.getQualifiedColName() + (qtcritxr_tsop.getVarName() != null ? " AND " + TFTestResultTable.table.varName.getQualifiedColName() + "(+)" + "=" + "'" + qtcritxr_tsop.getVarName() + "'" : "") + " AND " + TFTestCaseTable.table.mathModelRef.getQualifiedColName() + "=" + MathModelTable.table.id.getQualifiedColName() + " AND " + TFTestCriteriaTable.table.simulationRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + " AND " + MathModelSimulationLinkTable.table.mathModelRef.getQualifiedColName() + "=" + MathModelTable.table.id.getQualifiedColName() + " AND " + MathModelSimulationLinkTable.table.simRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + " AND " + MathModelTable.table.versionBranchID.getQualifiedColName() + "=" + "(" + "SELECT DISTINCT " + MathModelTable.table.versionBranchID.getQualifiedColName() + " FROM " + TFTestCaseTable.table.getTableName() + "," + TFTestCriteriaTable.table.getTableName() + "," + MathModelTable.table.getTableName() + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + qtcritxr_tsop.getTestCriterium() + " AND " + TFTestCriteriaTable.table.testCaseRef.getQualifiedColName() + "=" + TFTestCaseTable.table.id.getQualifiedColName() + " AND " + TFTestCaseTable.table.mathModelRef.getQualifiedColName() + "=" + MathModelTable.table.id.getQualifiedColName() + ")" + " AND " + SimulationTable.table.name.getQualifiedColName() + "=" + "(" + "SELECT DISTINCT " + SimulationTable.table.name.getQualifiedColName() + " FROM " + TFTestCriteriaTable.table.getTableName() + "," + SimulationTable.table.getTableName() + " WHERE " + TFTestCriteriaTable.table.id.getQualifiedColName() + "=" + qtcritxr_tsop.getTestCriterium() + " AND " + TFTestCriteriaTable.table.simulationRef.getQualifiedColName() + "=" + SimulationTable.table.id.getQualifiedColName() + ")" + // reference info
            " AND " + TSALT + "." + TFTestSuiteTable.table.id.getUnqualifiedColName() + "(+)" + "=" + TCALT + "." + TFTestCaseTable.table.testSuiteRef.getUnqualifiedColName() + " AND " + TCALT + "." + TFTestCaseTable.table.mathModelRef.getUnqualifiedColName() + "(+)" + "=" + MMSIMALT + "." + MathModelSimulationLinkTable.table.mathModelRef.getUnqualifiedColName() + " AND " + TCRALT + "." + TFTestCriteriaTable.table.regressionMMSimRef.getUnqualifiedColName() + "=" + MMSIMALT + "." + MathModelSimulationLinkTable.table.id.getUnqualifiedColName() + "(+)" + " AND " + TCRALT + "." + TFTestCriteriaTable.table.id.getUnqualifiedColName() + "=" + TFTestCriteriaTable.table.id.getQualifiedColName() + // SIM2+"."+SimulationTable.table.name.getUnqualifiedColName()+"="+SimulationTable.table.name.getQualifiedColName()+
            " ORDER BY " + TSID;
            rset = stmt.executeQuery(sql);
            while (rset.next()) {
                crossRefV.add(new TestCriteriaCrossRefOPResults.CrossRefData(rset, false));
            }
            rset.close();
            return new TestCriteriaCrossRefOPResults(qtcritxr_tsop.getTestSuiteKey(), qtcritxr_tsop.getTestCriterium(), crossRefV);
        } else {
            throw new IllegalArgumentException("Unsupported OP+" + tsop);
        }
    } finally {
        if (stmt != null) {
            stmt.close();
        }
    }
    Object[] changedTSKeys = changedTestSuiteKeys.toArray();
    for (int i = 0; i < changedTSKeys.length; i += 1) {
        System.out.println("TestSuite " + changedTSKeys[i].toString() + " changed");
    // testSuiteHash.remove(changedTSKeys[i]);
    }
    return new TestSuiteOPResults(null);
}
Also used : AddTestCriteriaOPBioModel(cbit.vcell.numericstest.AddTestCriteriaOPBioModel) AddTestCasesOPBioModel(cbit.vcell.numericstest.AddTestCasesOPBioModel) LoadTestInfoOpResults(cbit.vcell.numericstest.LoadTestInfoOpResults) LoadTestSoftwareVersionTimeStamp(cbit.vcell.numericstest.LoadTestInfoOpResults.LoadTestSoftwareVersionTimeStamp) AddTestResultsOP(cbit.vcell.numericstest.AddTestResultsOP) TreeSet(java.util.TreeSet) ResultSet(java.sql.ResultSet) TestSuiteOPResults(cbit.vcell.numericstest.TestSuiteOPResults) EditTestCriteriaOPBioModel(cbit.vcell.numericstest.EditTestCriteriaOPBioModel) VariableComparisonSummary(cbit.vcell.solver.test.VariableComparisonSummary) Vector(java.util.Vector) TestCriteriaCrossRefOPResults(cbit.vcell.numericstest.TestCriteriaCrossRefOPResults) RemoveTestCasesOP(cbit.vcell.numericstest.RemoveTestCasesOP) AddTestCriteriaOPMathModel(cbit.vcell.numericstest.AddTestCriteriaOPMathModel) ModelGeometryOPResults(cbit.vcell.numericstest.ModelGeometryOPResults) RemoveTestSuiteOP(cbit.vcell.numericstest.RemoveTestSuiteOP) KeyValue(org.vcell.util.document.KeyValue) LoadTestInfoOP(cbit.vcell.numericstest.LoadTestInfoOP) AddTestCasesOP(cbit.vcell.numericstest.AddTestCasesOP) EditTestSuiteOP(cbit.vcell.numericstest.EditTestSuiteOP) RemoveTestResultsOP(cbit.vcell.numericstest.RemoveTestResultsOP) RemoveTestCriteriaOP(cbit.vcell.numericstest.RemoveTestCriteriaOP) EditTestCriteriaOPMathModel(cbit.vcell.numericstest.EditTestCriteriaOPMathModel) AddTestSuiteOP(cbit.vcell.numericstest.AddTestSuiteOP) AddTestCasesOPMathModel(cbit.vcell.numericstest.AddTestCasesOPMathModel) DataAccessException(org.vcell.util.DataAccessException) EditTestCriteriaOPReportStatus(cbit.vcell.numericstest.EditTestCriteriaOPReportStatus) ModelGeometryOP(cbit.vcell.numericstest.ModelGeometryOP) QueryTestCriteriaCrossRefOP(cbit.vcell.numericstest.QueryTestCriteriaCrossRefOP) PreparedStatement(java.sql.PreparedStatement) Statement(java.sql.Statement) Hashtable(java.util.Hashtable) InsertHashtable(cbit.sql.InsertHashtable) BioModelInfo(org.vcell.util.document.BioModelInfo) MathModelInfo(org.vcell.util.document.MathModelInfo) BigDecimal(java.math.BigDecimal) EditTestCasesOP(cbit.vcell.numericstest.EditTestCasesOP) ChangeTestCriteriaErrorLimitOP(cbit.vcell.numericstest.ChangeTestCriteriaErrorLimitOP) SimpleDateFormat(java.text.SimpleDateFormat)

Aggregations

AddTestCasesOP (cbit.vcell.numericstest.AddTestCasesOP)2 AddTestCasesOPBioModel (cbit.vcell.numericstest.AddTestCasesOPBioModel)2 AddTestCasesOPMathModel (cbit.vcell.numericstest.AddTestCasesOPMathModel)2 AddTestCriteriaOPBioModel (cbit.vcell.numericstest.AddTestCriteriaOPBioModel)2 AddTestCriteriaOPMathModel (cbit.vcell.numericstest.AddTestCriteriaOPMathModel)2 EditTestCriteriaOPBioModel (cbit.vcell.numericstest.EditTestCriteriaOPBioModel)2 EditTestCriteriaOPMathModel (cbit.vcell.numericstest.EditTestCriteriaOPMathModel)2 BigDecimal (java.math.BigDecimal)2 DataAccessException (org.vcell.util.DataAccessException)2 KeyValue (org.vcell.util.document.KeyValue)2 InsertHashtable (cbit.sql.InsertHashtable)1 BioModel (cbit.vcell.biomodel.BioModel)1 GeometricRegion (cbit.vcell.geometry.surface.GeometricRegion)1 GeometrySurfaceDescription (cbit.vcell.geometry.surface.GeometrySurfaceDescription)1 GeometryContext (cbit.vcell.mapping.GeometryContext)1 MathMapping (cbit.vcell.mapping.MathMapping)1 SimulationContext (cbit.vcell.mapping.SimulationContext)1 MathModel (cbit.vcell.mathmodel.MathModel)1 Membrane (cbit.vcell.model.Membrane)1 MembraneVoltage (cbit.vcell.model.Membrane.MembraneVoltage)1