Examples with VCDocumentInfo org.vcell.util.document.VCDocumentInfo used on opensource projects

Example 21 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class TestingFrameworkWindowPanel method getUserSelectedSimulationInfo.

private TFGenerateReport.VCDocumentAndSimInfo getUserSelectedSimulationInfo() throws Exception {
    final String CANCEL_STRING = "Cancel";
    final String BM_STRING = "BioModel";
    final String MM_STRING = "MathModel";
    String result = PopupGenerator.showWarningDialog(this, "Choose Reference Model Type.", new String[] { BM_STRING, MM_STRING, CANCEL_STRING }, CANCEL_STRING);
    if (result == null || result.equals(CANCEL_STRING)) {
        throw UserCancelException.CANCEL_GENERIC;
    }
    VCDocumentInfo userDefinedRegrRefModel = null;
    VCDocument vcDocument = null;
    if (result.equals(BM_STRING)) {
        userDefinedRegrRefModel = getTestingFrameworkWindowManager().getRequestManager().selectBioModelInfo(getTestingFrameworkWindowManager());
        vcDocument = getTestingFrameworkWindowManager().getRequestManager().getDocumentManager().getBioModel(userDefinedRegrRefModel.getVersion().getVersionKey());
    } else {
        userDefinedRegrRefModel = getTestingFrameworkWindowManager().getRequestManager().selectMathModelInfo(getTestingFrameworkWindowManager());
        vcDocument = getTestingFrameworkWindowManager().getRequestManager().getDocumentManager().getMathModel(userDefinedRegrRefModel.getVersion().getVersionKey());
    }
    SimulationInfo simInfo = getTestingFrameworkWindowManager().getUserSelectedRefSimInfo(getTestingFrameworkWindowManager().getRequestManager(), userDefinedRegrRefModel);
    TFGenerateReport.VCDocumentAndSimInfo vcDocumentAndsimInfo = new TFGenerateReport.VCDocumentAndSimInfo(simInfo, vcDocument);
    return vcDocumentAndsimInfo;
}

Example 22 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class DocumentToExport method run.

/**
 * Insert the method's description here. Creation date: (5/31/2004 6:04:14
 * PM)
 *
 * @param hashTable
 *            java.util.Hashtable
 * @param clientWorker
 *            cbit.vcell.desktop.controls.ClientWorker
 */
@Override
public void run(Hashtable<String, Object> hashTable) throws java.lang.Exception {
    TopLevelWindowManager topLevelWindowManager = extractRequired(hashTable, TopLevelWindowManager.class, "topLevelWindowManager");
    VCDocument doc = null;
    if (topLevelWindowManager instanceof DocumentWindowManager) {
        doc = ((DocumentWindowManager) topLevelWindowManager).getVCDocument();
    } else if (topLevelWindowManager instanceof DatabaseWindowManager) {
        DocumentManager documentManager = extractRequired(hashTable, DocumentManager.class, CommonTask.DOCUMENT_MANAGER.name);
        VCDocumentInfo documentInfo = ((DatabaseWindowManager) topLevelWindowManager).getPanelSelection();
        if (documentInfo instanceof BioModelInfo) {
            BioModelInfo bmi = (BioModelInfo) documentInfo;
            doc = documentManager.getBioModel(bmi);
        } else if (documentInfo instanceof MathModelInfo) {
            MathModelInfo mmi = (MathModelInfo) documentInfo;
            doc = documentManager.getMathModel(mmi);
        } else if (documentInfo instanceof GeometryInfo) {
            GeometryInfo gmi = (GeometryInfo) documentInfo;
            doc = documentManager.getGeometry(gmi);
        }
        if (doc == null) {
            throw new IllegalStateException("export called on DatabaseWindowManager with selection " + documentInfo);
        }
    }
    if (doc != null) {
        hashTable.put(EXPORT_DOCUMENT, doc);
    } else {
        throw new UnsupportedOperationException("TopLevelWindowManager subclass " + topLevelWindowManager.getClass().getName() + " does not support exporting to document");
    }
}

Example 23 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class ClientRequestManager method revertToSaved.

/**
 * Insert the method's description here.
 * Creation date: (6/9/2004 1:07:09 PM)
 * @param vcDocument cbit.vcell.document.VCDocument
 */
public void revertToSaved(DocumentWindowManager documentWindowManager) {
    // make the info
    VCDocument document = documentWindowManager.getVCDocument();
    VCDocumentInfo info = null;
    try {
        KeyValue versionKey = document.getVersion().getVersionKey();
        switch(document.getDocumentType()) {
            case BIOMODEL_DOC:
                {
                    info = getDocumentManager().getBioModelInfo(versionKey);
                    break;
                }
            case MATHMODEL_DOC:
                {
                    info = getDocumentManager().getMathModelInfo(versionKey);
                    break;
                }
            case GEOMETRY_DOC:
                {
                    info = getDocumentManager().getGeometryInfo(versionKey);
                    break;
                }
        }
    } catch (DataAccessException e) {
        e.printStackTrace(System.out);
        throw new RuntimeException(e.getMessage());
    }
    // reload and reset into same window
    openAfterChecking(info, documentWindowManager, false);
}

Example 24 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class ClientRequestManager method openDocument.

public void openDocument(VCDocumentType documentType, DocumentWindowManager requester) {
    /* trying to open from database; called by DocumentWindow */
    // get an info first
    VCDocumentInfo documentInfo = null;
    try {
        documentInfo = getMdiManager().getDatabaseWindowManager().selectDocument(documentType, requester);
        // check whether request comes from a blank, unchanged document window; if so, open in same window, otherwise in a new window
        boolean inNewWindow = isDifferentFromBlank(documentType, requester.getVCDocument());
        openDocument(documentInfo, requester, inNewWindow);
    } catch (UserCancelException uexc) {
        System.out.println(uexc);
        return;
    } catch (Exception exc) {
        exc.printStackTrace(System.out);
        PopupGenerator.showErrorDialog(requester, "Open document failed\n" + exc.getMessage(), exc);
    }
}

Example 25 with VCDocumentInfo

use of org.vcell.util.document.VCDocumentInfo in project vcell by virtualcell.

the class ClientRequestManager method createSelectLoadGeomTask.

private AsynchClientTask createSelectLoadGeomTask(final TopLevelWindowManager requester) {
    AsynchClientTask selectLoadGeomTask = new AsynchClientTask("Select/Load geometry...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            VersionInfo vcVersionInfo = (VersionInfo) hashTable.get(VERSIONINFO_KEY);
            Geometry geom = null;
            if (vcVersionInfo instanceof VCDocumentInfo) {
                geom = getGeometryFromDocumentSelection(requester.getComponent(), (VCDocumentInfo) vcVersionInfo, false);
            } else if (vcVersionInfo instanceof VCImageInfo) {
                VCImage img = getDocumentManager().getImage((VCImageInfo) vcVersionInfo);
                geom = new Geometry("createSelectLoadGeomTask", img);
            } else {
                throw new Exception("Unexpected versioninfo type.");
            }
            // pregenerate sampled image, cpu intensive
            geom.precomputeAll(new GeometryThumbnailImageFactoryAWT());
            hashTable.put(GEOMETRY_KEY, geom);
        }
    };
    return selectLoadGeomTask;
}