Examples with GeometryThumbnailImageFactoryAWT cbit.vcell.geometry.GeometryThumbnailImageFactoryAWT used on opensource projects

Example 1 with GeometryThumbnailImageFactoryAWT

use of cbit.vcell.geometry.GeometryThumbnailImageFactoryAWT in project vcell by virtualcell.

the class MathModelWindowManager method actionPerformed.

/**
 * Invoked when an action occurs.
 */
public void actionPerformed(java.awt.event.ActionEvent e) {
    String actionCommand = e.getActionCommand();
    final Object source = e.getSource();
    if (source instanceof GeometryViewer && actionCommand.equals(GuiConstants.ACTIONCMD_CREATE_GEOMETRY) || actionCommand.equals(GuiConstants.ACTIONCMD_EDITCURRENTSPATIAL_GEOMETRY)) {
        AsynchClientTask geomRegionsTask = new AsynchClientTask("Update Geometric regions", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

            @Override
            public void run(Hashtable<String, Object> hashTable) throws Exception {
                Geometry newGeom = (Geometry) hashTable.get("doc");
                ClientRequestManager.continueAfterMathModelGeomChangeWarning(MathModelWindowManager.this, newGeom);
                newGeom.precomputeAll(new GeometryThumbnailImageFactoryAWT());
            }
        };
        AsynchClientTask applyGeomTask = new AsynchClientTask("Apply Geometry", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

            @Override
            public void run(Hashtable<String, Object> hashTable) throws Exception {
                Geometry newGeom = (Geometry) hashTable.get("doc");
                if (newGeom.getName() == null) {
                    newGeom.setName(getMathModel().getName() + "_" + BeanUtils.generateDateTimeString());
                }
                ((MathModel) getVCDocument()).getMathDescription().setGeometry(newGeom);
            }
        };
        createGeometry(getMathModel().getMathDescription().getGeometry(), new AsynchClientTask[] { /*editSelectTask,*/
        geomRegionsTask, applyGeomTask }, TopLevelWindowManager.DEFAULT_CREATEGEOM_SELECT_DIALOG_TITLE, TopLevelWindowManager.APPLY_GEOMETRY_BUTTON_TEXT, (actionCommand.equals(GuiConstants.ACTIONCMD_EDITCURRENTSPATIAL_GEOMETRY) ? new DocumentWindowManager.GeometrySelectionInfo() : null));
    }
    if (source instanceof GeometryViewer && actionCommand.equals(GuiConstants.ACTIONCMD_CHANGE_GEOMETRY)) {
        Hashtable<String, Object> hashTable = new Hashtable<String, Object>();
        hashTable.put(SELECT_GEOM_POPUP, new Boolean(true));
        getRequestManager().changeGeometry(this, null, hashTable);
    }
}

Example 2 with GeometryThumbnailImageFactoryAWT

use of cbit.vcell.geometry.GeometryThumbnailImageFactoryAWT in project vcell by virtualcell.

the class BioModelEditorApplicationPanel method setSimulationContext.

public void setSimulationContext(SimulationContext newValue) {
    if (simulationContext == newValue) {
        return;
    }
    final boolean respondingToSelectionManager = selectionManager.isBusy();
    final Object[] selectedObj = selectionManager.getSelectedObjects();
    SimulationContext oldValue = simulationContext;
    if (oldValue != null) {
        oldValue.removePropertyChangeListener(eventHandler);
    }
    if (newValue != null) {
        newValue.addPropertyChangeListener(eventHandler);
    }
    simulationContext = newValue;
    AsynchClientTask task1 = new AsynchClientTask("loading application", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            simulationContext.getGeometry().precomputeAll(new GeometryThumbnailImageFactoryAWT());
        }
    };
    AsynchClientTask task2 = new AsynchClientTask("showing application", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            applicationGeometryPanel.setSimulationContext(simulationContext);
            applicationSpecificationsPanel.setSimulationContext(simulationContext);
            applicationProtocolsPanel.setSimulationContext(simulationContext);
            applicationSimulationsPanel.setSimulationContext(simulationContext);
            parameterEstimationPanel.setSelectionManager(null);
            showOrHideFittingPanel();
            parameterEstimationPanel.setSelectionManager(selectionManager);
            if (respondingToSelectionManager) {
                selectionManager.setSelectedObjects(new Object[0]);
                selectionManager.setSelectedObjects(selectedObj);
            }
        }
    };
    ClientTaskDispatcher.dispatch(this, new Hashtable<String, Object>(), new AsynchClientTask[] { task1, task2 });
}

Example 3 with GeometryThumbnailImageFactoryAWT

use of cbit.vcell.geometry.GeometryThumbnailImageFactoryAWT in project vcell by virtualcell.

the class GeometryGuiTest method getExampleGeometryCSG.

public static Geometry getExampleGeometryCSG() throws PropertyVetoException, ExpressionException, GeometryException, ImageException {
    // translated rotated cube
    CSGPrimitive cube = new CSGPrimitive("cube", CSGPrimitive.PrimitiveType.CUBE);
    CSGRotation rotatedCube = new CSGRotation("Rotation", new Vect3d(1, 2, 3), Math.PI / 4.0);
    rotatedCube.setChild(cube);
    // translated sphere
    CSGTranslation translatedSphere = new CSGTranslation("translation", new Vect3d(0.5, 0.5, 0.5));
    CSGPrimitive sphere = new CSGPrimitive("sphere", CSGPrimitive.PrimitiveType.SPHERE);
    translatedSphere.setChild(sphere);
    // union
    CSGSetOperator csgSetOperator = new CSGSetOperator("difference", OperatorType.DIFFERENCE);
    csgSetOperator.addChild(rotatedCube);
    csgSetOperator.addChild(translatedSphere);
    // scaled union
    CSGScale csgScale = new CSGScale("scale", new Vect3d(3, 3, 3));
    csgScale.setChild(csgSetOperator);
    CSGTranslation csgTranslatedUnion = new CSGTranslation("translationUnion", new Vect3d(5, 5, 5));
    csgTranslatedUnion.setChild(csgScale);
    Geometry geometry = new Geometry("csg", 3);
    CSGObject csgObject = new CSGObject(null, "obj1", 1);
    csgObject.setRoot(csgTranslatedUnion);
    geometry.getGeometrySpec().addSubVolume(new AnalyticSubVolume("background", new Expression(1.0)));
    geometry.getGeometrySpec().addSubVolume(csgObject, true);
    geometry.refreshDependencies();
    geometry.precomputeAll(new GeometryThumbnailImageFactoryAWT());
    return geometry;
}

Example 4 with GeometryThumbnailImageFactoryAWT

use of cbit.vcell.geometry.GeometryThumbnailImageFactoryAWT in project vcell by virtualcell.

the class GeometryGuiTest method main.

public static void main(java.lang.String[] args) {
    try {
        javax.swing.JFrame frame = new javax.swing.JFrame();
        GeometryViewer aGeometryViewer;
        aGeometryViewer = new GeometryViewer();
        frame.setContentPane(aGeometryViewer);
        frame.setSize(aGeometryViewer.getSize());
        frame.addWindowListener(new java.awt.event.WindowAdapter() {

            public void windowClosing(java.awt.event.WindowEvent e) {
                System.exit(0);
            }
        });
        Geometry csGeometry = getExampleGeometryCSG();
        // try to convert this CSG geometry to image
        ISize imageSize = csGeometry.getGeometrySpec().getDefaultSampledImageSize();
        Geometry imageGeometry = RayCaster.resampleGeometry(new GeometryThumbnailImageFactoryAWT(), csGeometry, imageSize);
        // aGeometryViewer.setGeometry(csGeometry);
        aGeometryViewer.setGeometry(imageGeometry);
        frame.setSize(600, 600);
        frame.setVisible(true);
    } catch (Throwable exception) {
        System.err.println("Exception occurred in main() of javax.swing.JPanel");
        exception.printStackTrace(System.out);
    }
}

Example 5 with GeometryThumbnailImageFactoryAWT

use of cbit.vcell.geometry.GeometryThumbnailImageFactoryAWT in project vcell by virtualcell.

the class GeometrySubVolumeTableModel method setValueAt.

public void setValueAt(Object aValue, int rowIndex, int columnIndex) {
    if (rowIndex < 0 || rowIndex >= getRowCount()) {
        throw new RuntimeException("GeometrySubVolumeTableModel.setValueAt(), row = " + rowIndex + " out of range [" + 0 + "," + (getRowCount() - 1) + "]");
    }
    if (columnIndex < 0 || columnIndex >= getColumnCount()) {
        throw new RuntimeException("GeometrySubVolumeTableModel.setValueAt(), column = " + columnIndex + " out of range [" + 0 + "," + (getColumnCount() - 1) + "]");
    }
    final SubVolume subVolume = getValueAt(rowIndex);
    try {
        switch(columnIndex) {
            case COLUMN_NAME:
                {
                    final String newName = (String) aValue;
                    final String oldName = subVolume.getName();
                    subVolume.setName(newName);
                    AsynchClientTask task1 = new AsynchClientTask("changing the name", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

                        @Override
                        public void run(Hashtable<String, Object> hashTable) throws Exception {
                            getGeometry().precomputeAll(new GeometryThumbnailImageFactoryAWT());
                            GeometrySpec gs = getGeometry().getGeometrySpec();
                            if (gs != null) {
                                gs.geometryNameChanged(oldName, newName);
                            } else {
                                if (lg.isWarnEnabled()) {
                                    lg.warn(getGeometry().getDescription() + " has no GeometrySpec?");
                                }
                            }
                        }
                    };
                    ClientTaskDispatcher.dispatch(ownerTable, new Hashtable<String, Object>(), new AsynchClientTask[] { task1 }, false);
                    break;
                }
            case COLUMN_VALUE:
                {
                    if (subVolume instanceof AnalyticSubVolume) {
                        final AnalyticSubVolume analyticSubVolume = (AnalyticSubVolume) subVolume;
                        if (aValue instanceof ScopedExpression) {
                            throw new RuntimeException("unexpected value type ScopedExpression");
                        } else if (aValue instanceof String) {
                            final String newExpressionString = (String) aValue;
                            analyticSubVolume.setExpression(new Expression(newExpressionString));
                            AsynchClientTask task1 = new AsynchClientTask("changing the expression", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

                                @Override
                                public void run(Hashtable<String, Object> hashTable) throws Exception {
                                    getGeometry().precomputeAll(new GeometryThumbnailImageFactoryAWT());
                                }
                            };
                            ClientTaskDispatcher.dispatch(ownerTable, new Hashtable<String, Object>(), new AsynchClientTask[] { task1 }, false);
                        }
                    }
                    break;
                }
        }
    } catch (Exception e) {
        e.printStackTrace(System.out);
        DialogUtils.showErrorDialog(ownerTable, e.getMessage(), e);
    }
}