Examples with CSGScale cbit.vcell.geometry.CSGScale used on opensource projects

Example 1 with CSGScale

use of cbit.vcell.geometry.CSGScale in project vcell by virtualcell.

the class ComsolModelBuilder method csgVisitor.

private static VCCGeomFeature csgVisitor(CSGNode node, ArrayList<VCCGeomFeature> geomFeatureList, String namePrefix) {
    final VCCGeomFeature newFeature;
    if (node instanceof CSGPrimitive) {
        CSGPrimitive csg = (CSGPrimitive) node;
        switch(csg.getType()) {
            case CONE:
                {
                    newFeature = new VCCCone(namePrefix + csg.getName());
                    break;
                }
            case CUBE:
                {
                    String[] size = new String[] { "2", "2", "2" };
                    String[] pos = new String[] { "-1", "-1", "-1" };
                    VCCBlock vccblock = new VCCBlock(namePrefix + csg.getName(), size, pos);
                    newFeature = vccblock;
                    break;
                }
            case CYLINDER:
                {
                    newFeature = new VCCCylinder(namePrefix + csg.getName());
                    break;
                }
            case SPHERE:
                {
                    String r = "1";
                    String[] pos = new String[] { "0", "0", "0" };
                    newFeature = new VCCSphere(namePrefix + csg.getName(), pos, r);
                    break;
                }
            default:
                {
                    throw new RuntimeException("csg primative type '" + csg.getType().name() + "' not yet supported in COMSOL model builder");
                }
        }
    } else if (node instanceof CSGSetOperator) {
        CSGSetOperator setOp = (CSGSetOperator) node;
        ArrayList<VCCGeomFeature> childSubtrees = new ArrayList<VCCGeomFeature>();
        for (CSGNode child : setOp.getChildren()) {
            VCCGeomFeature vccChild = csgVisitor(child, geomFeatureList, namePrefix);
            childSubtrees.add(vccChild);
        }
        switch(setOp.getOpType()) {
            case DIFFERENCE:
                {
                    if (childSubtrees.size() != 2) {
                        throw new RuntimeException("expecting exactly two children for CSG difference operator");
                    }
                    VCCDifference diff = new VCCDifference(namePrefix + setOp.getName(), Keep.off);
                    diff.input.add(childSubtrees.get(0));
                    diff.input2.add(childSubtrees.get(1));
                    newFeature = diff;
                    break;
                }
            case INTERSECTION:
                {
                    if (childSubtrees.size() < 2) {
                        throw new RuntimeException("expecting two or more children for CSG intersection operator");
                    }
                    VCCIntersection intersection = new VCCIntersection(namePrefix + setOp.getName(), Keep.off);
                    intersection.input.add(childSubtrees.get(0));
                    newFeature = intersection;
                    break;
                }
            case UNION:
                {
                    if (childSubtrees.size() < 2) {
                        throw new RuntimeException("expecting two or more children for CSG union operator");
                    }
                    VCCUnion union = new VCCUnion(namePrefix + setOp.getName(), Keep.off);
                    union.input.add(childSubtrees.get(0));
                    newFeature = union;
                    break;
                }
            default:
                {
                    throw new RuntimeException("csg set operator '" + setOp.getOpType().name() + "' not yet supported in COMSOL model builder");
                }
        }
    } else if (node instanceof CSGTransformation) {
        CSGTransformation transformation = (CSGTransformation) node;
        VCCGeomFeature vccChild = csgVisitor(transformation.getChild(), geomFeatureList, namePrefix);
        if (transformation instanceof CSGHomogeneousTransformation) {
            throw new RuntimeException("unsupported CSG transformation type Homogeneous transformation");
        } else if (transformation instanceof CSGRotation) {
            CSGRotation rotation = (CSGRotation) transformation;
            String[] axis = new String[] { Double.toString(rotation.getAxis().getX()), Double.toString(rotation.getAxis().getY()), Double.toString(rotation.getAxis().getZ()) };
            String[] pos = new String[] { "0.0", "0.0", "0.0" };
            String rot = Double.toString(rotation.getRotationRadians());
            VCCRotate vccrotate = new VCCRotate(namePrefix + rotation.getName(), axis, pos, rot, Keep.off);
            vccrotate.input.add(vccChild);
            newFeature = vccrotate;
        } else if (transformation instanceof CSGScale) {
            CSGScale scale = (CSGScale) transformation;
            String[] factor = new String[] { Double.toString(scale.getScale().getX()), Double.toString(scale.getScale().getY()), Double.toString(scale.getScale().getZ()) };
            String[] pos = new String[] { "0.0", "0.0", "0.0" };
            VCCScale vccscale = new VCCScale(namePrefix + scale.getName(), pos, factor, Keep.off);
            vccscale.input.add(vccChild);
            newFeature = vccscale;
        } else if (transformation instanceof CSGTranslation) {
            CSGTranslation translation = (CSGTranslation) transformation;
            String[] displ = new String[] { Double.toString(translation.getTranslation().getX()), Double.toString(translation.getTranslation().getY()), Double.toString(translation.getTranslation().getZ()) };
            VCCMove vccmove = new VCCMove(namePrefix + translation.getName(), displ, Keep.off);
            vccmove.input.add(vccChild);
            newFeature = vccmove;
        } else {
            throw new RuntimeException("unsupported CSG transformation type '" + transformation.getClass().getSimpleName() + "'");
        }
    } else {
        throw new RuntimeException("unsupported CSGNode type '" + node.getClass().getSimpleName() + "'");
    }
    geomFeatureList.add(newFeature);
    return newFeature;
}

Example 2 with CSGScale

use of cbit.vcell.geometry.CSGScale in project vcell by virtualcell.

the class GeometryGuiTest method getExampleGeometryCSG.

public static Geometry getExampleGeometryCSG() throws PropertyVetoException, ExpressionException, GeometryException, ImageException {
    // translated rotated cube
    CSGPrimitive cube = new CSGPrimitive("cube", CSGPrimitive.PrimitiveType.CUBE);
    CSGRotation rotatedCube = new CSGRotation("Rotation", new Vect3d(1, 2, 3), Math.PI / 4.0);
    rotatedCube.setChild(cube);
    // translated sphere
    CSGTranslation translatedSphere = new CSGTranslation("translation", new Vect3d(0.5, 0.5, 0.5));
    CSGPrimitive sphere = new CSGPrimitive("sphere", CSGPrimitive.PrimitiveType.SPHERE);
    translatedSphere.setChild(sphere);
    // union
    CSGSetOperator csgSetOperator = new CSGSetOperator("difference", OperatorType.DIFFERENCE);
    csgSetOperator.addChild(rotatedCube);
    csgSetOperator.addChild(translatedSphere);
    // scaled union
    CSGScale csgScale = new CSGScale("scale", new Vect3d(3, 3, 3));
    csgScale.setChild(csgSetOperator);
    CSGTranslation csgTranslatedUnion = new CSGTranslation("translationUnion", new Vect3d(5, 5, 5));
    csgTranslatedUnion.setChild(csgScale);
    Geometry geometry = new Geometry("csg", 3);
    CSGObject csgObject = new CSGObject(null, "obj1", 1);
    csgObject.setRoot(csgTranslatedUnion);
    geometry.getGeometrySpec().addSubVolume(new AnalyticSubVolume("background", new Expression(1.0)));
    geometry.getGeometrySpec().addSubVolume(csgObject, true);
    geometry.refreshDependencies();
    geometry.precomputeAll(new GeometryThumbnailImageFactoryAWT());
    return geometry;
}

Example 3 with CSGScale

use of cbit.vcell.geometry.CSGScale in project vcell by virtualcell.

the class Xmlproducer method getXML.

private Element getXML(CSGTransformation param) {
    Element csgTransformationElement = null;
    // defer it to subclasses to get attributes
    if (param instanceof CSGHomogeneousTransformation) {
        csgTransformationElement = getXML((CSGHomogeneousTransformation) param);
    } else if (param instanceof CSGRotation) {
        csgTransformationElement = getXML((CSGRotation) param);
    } else if (param instanceof CSGScale) {
        csgTransformationElement = getXML((CSGScale) param);
    } else if (param instanceof CSGTranslation) {
        csgTransformationElement = getXML((CSGTranslation) param);
    }
    // add child CSGNode on which the transformation is applied
    Element csgNodeElement = getXML(param.getChild());
    csgTransformationElement.addContent(csgNodeElement);
    return csgTransformationElement;
}

Example 4 with CSGScale

use of cbit.vcell.geometry.CSGScale in project vcell by virtualcell.

the class XmlReader method getCSGScale.

private CSGScale getCSGScale(Element param) throws XmlParseException {
    String name = unMangle(param.getAttributeValue(XMLTags.NameAttrTag));
    String scaleXStr = unMangle(param.getAttributeValue(XMLTags.CSGScaleXTag));
    String scaleYStr = unMangle(param.getAttributeValue(XMLTags.CSGScaleYTag));
    String scaleZStr = unMangle(param.getAttributeValue(XMLTags.CSGScaleZTag));
    Vect3d scaleAxis = new Vect3d(Double.parseDouble(scaleXStr), Double.parseDouble(scaleYStr), Double.parseDouble(scaleZStr));
    CSGScale csgScale = new CSGScale(name, scaleAxis);
    // Retrieve CSGNode - CSGScale element should have one child
    Object[] elements = param.getChildren().toArray();
    if (elements.length > 1) {
        throw new XmlParseException("CSGScale element cannot have more than one child element");
    }
    CSGNode csgChildNode = getCSGNode((Element) elements[0]);
    csgScale.setChild(csgChildNode);
    return csgScale;
}

Example 5 with CSGScale

use of cbit.vcell.geometry.CSGScale in project vcell by virtualcell.

the class CSGObjectTreeCellEditor method getTreeCellEditorComponent.

@Override
public Component getTreeCellEditorComponent(JTree tree, Object value, boolean isSelected, boolean expanded, boolean leaf, int row) {
    if (!(value instanceof BioModelNode)) {
        return null;
    }
    Object userObject = ((BioModelNode) value).getUserObject();
    CSGObjectTreeCellRenderer.CSGNodeLabel csgNodeLabel = new CSGObjectTreeCellRenderer.CSGNodeLabel();
    CSGObjectTreeCellRenderer.getCSGNodeLabel(userObject, csgNodeLabel);
    renderer.setOpenIcon(csgNodeLabel.icon);
    renderer.setClosedIcon(csgNodeLabel.icon);
    renderer.setLeafIcon(csgNodeLabel.icon);
    Component component = null;
    if (bRenaming) {
        realEditor = defaultCellEditor;
        component = super.getTreeCellEditorComponent(tree, value, isSelected, expanded, leaf, row);
        if (editingComponent instanceof JTextField) {
            String text = null;
            JTextField textField = (JTextField) editingComponent;
            if (userObject instanceof CSGObject) {
                text = ((CSGObject) userObject).getName();
            } else if (userObject instanceof CSGNode) {
                text = ((CSGNode) userObject).getName();
            }
            textField.setText(text);
        }
    } else {
        if (userObject instanceof CSGScale || userObject instanceof CSGTranslation) {
            realEditor = getVect3dCellEditor();
            Vect3d vect3d = null;
            if (userObject instanceof CSGScale) {
                vect3d = ((CSGScale) userObject).getScale();
            } else if (userObject instanceof CSGTranslation) {
                vect3d = ((CSGTranslation) userObject).getTranslation();
            }
            component = super.getTreeCellEditorComponent(tree, vect3d, isSelected, expanded, leaf, row);
        } else if (userObject instanceof CSGRotation) {
            realEditor = getRotationCellEditor();
            component = super.getTreeCellEditorComponent(tree, value, isSelected, expanded, leaf, row);
        }
    }
    return component;
}