use of cbit.vcell.geometry.CSGScale in project vcell by virtualcell.
the class CSGObjectTreeCellRenderer method getCSGNodeLabel.
static CSGNodeLabel getCSGNodeLabel(Object object, CSGNodeLabel csgNodeLabel) {
if (object instanceof CSGObject) {
CSGObject csgObject = (CSGObject) object;
csgNodeLabel.text = csgObject.getName();
java.awt.Color handleColor = new java.awt.Color(getColorMap()[csgObject.getHandle()]);
csgNodeLabel.icon = new ColorIcon(15, 15, handleColor);
} else if (object instanceof CSGNode) {
CSGNode csgNode = (CSGNode) object;
csgNodeLabel.text = csgNode.getName();
if (csgNode instanceof CSGPrimitive) {
CSGPrimitive csgPrimitive = (CSGPrimitive) csgNode;
switch(csgPrimitive.getType()) {
case CONE:
csgNodeLabel.icon = VCellIcons.csgConeIcon;
break;
case CUBE:
csgNodeLabel.icon = VCellIcons.csgCubeIcon;
break;
case CYLINDER:
csgNodeLabel.icon = VCellIcons.csgCylinderIcon;
break;
case SPHERE:
csgNodeLabel.icon = VCellIcons.csgSphereIcon;
break;
}
return csgNodeLabel;
}
if (csgNode instanceof CSGSetOperator) {
CSGSetOperator csgSetOperator = (CSGSetOperator) csgNode;
switch(csgSetOperator.getOpType()) {
case DIFFERENCE:
csgNodeLabel.icon = VCellIcons.csgSetDifferenceIcon;
break;
case INTERSECTION:
csgNodeLabel.icon = VCellIcons.csgSetIntersectionIcon;
break;
case UNION:
csgNodeLabel.icon = VCellIcons.csgSetUnionIcon;
break;
}
}
if (csgNode instanceof CSGTransformation) {
if (csgNode instanceof CSGRotation) {
CSGRotation csgRotation = (CSGRotation) csgNode;
Vect3d axis = csgRotation.getAxis();
double radius = csgRotation.getRotationRadians();
csgNodeLabel.text += ", radian=" + radius + ", axis=" + CSGObjectPropertiesPanel.getVect3dDescription(axis);
csgNodeLabel.icon = VCellIcons.csgRotationIcon;
} else if (csgNode instanceof CSGTranslation) {
CSGTranslation csgTranslation = (CSGTranslation) csgNode;
Vect3d translation = csgTranslation.getTranslation();
csgNodeLabel.text += ", Translation=" + CSGObjectPropertiesPanel.getVect3dDescription(translation);
csgNodeLabel.icon = VCellIcons.csgTranslationIcon;
} else if (csgNode instanceof CSGScale) {
CSGScale csgScale = (CSGScale) csgNode;
Vect3d scale = csgScale.getScale();
csgNodeLabel.text += ", Scale=" + CSGObjectPropertiesPanel.getVect3dDescription(scale);
csgNodeLabel.icon = VCellIcons.csgScaleIcon;
} else if (csgNode instanceof CSGHomogeneousTransformation) {
csgNodeLabel.icon = null;
}
}
}
return null;
}
use of cbit.vcell.geometry.CSGScale in project vcell by virtualcell.
the class ClientRequestManager method createNewDocument.
/**
* Insert the method's description here.
* Creation date: (5/10/2004 3:48:16 PM)
*/
public AsynchClientTask[] createNewDocument(final TopLevelWindowManager requester, final VCDocument.DocumentCreationInfo documentCreationInfo) {
// throws UserCancelException, Exception {
/* asynchronous and not blocking any window */
AsynchClientTask[] taskArray = null;
final int createOption = documentCreationInfo.getOption();
switch(documentCreationInfo.getDocumentType()) {
case BIOMODEL_DOC:
{
AsynchClientTask task1 = new AsynchClientTask("creating biomodel", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
@Override
public void run(Hashtable<String, Object> hashTable) throws Exception {
BioModel bioModel = createDefaultBioModelDocument(null);
hashTable.put("doc", bioModel);
}
};
taskArray = new AsynchClientTask[] { task1 };
break;
}
case MATHMODEL_DOC:
{
if ((createOption == VCDocument.MATH_OPTION_NONSPATIAL) || (createOption == VCDocument.MATH_OPTION_SPATIAL_EXISTS)) {
AsynchClientTask task2 = new AsynchClientTask("creating mathmodel", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
@Override
public void run(Hashtable<String, Object> hashTable) throws Exception {
Geometry geometry = null;
if (createOption == VCDocument.MATH_OPTION_NONSPATIAL) {
geometry = new Geometry("Untitled", 0);
} else {
geometry = (Geometry) hashTable.get(GEOMETRY_KEY);
}
MathModel mathModel = createMathModel("Untitled", geometry);
mathModel.setName("MathModel" + (getMdiManager().getNumCreatedDocumentWindows() + 1));
hashTable.put("doc", mathModel);
}
};
if (createOption == VCDocument.MATH_OPTION_SPATIAL_EXISTS) {
AsynchClientTask task1 = createSelectDocTask(requester);
AsynchClientTask task1b = createSelectLoadGeomTask(requester);
taskArray = new AsynchClientTask[] { task1, task1b, task2 };
} else {
taskArray = new AsynchClientTask[] { task2 };
}
break;
} else if (createOption == VCDocument.MATH_OPTION_FROMBIOMODELAPP) {
AsynchClientTask task1 = new AsynchClientTask("select biomodel application", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {
@Override
public void run(Hashtable<String, Object> hashTable) throws Exception {
// spatial or non-spatial
BioModelInfo bioModelInfo = (BioModelInfo) DialogUtils.getDBTreePanelSelection(requester.getComponent(), getMdiManager().getDatabaseWindowManager().getBioModelDbTreePanel(), "Open", "Select BioModel");
if (bioModelInfo != null) {
// may throw UserCancelException
hashTable.put("bioModelInfo", bioModelInfo);
}
}
};
AsynchClientTask task2 = new AsynchClientTask("find sim contexts in biomodel application", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
@Override
public void run(Hashtable<String, Object> hashTable) throws Exception {
// spatial or non-spatial
// Get the simContexts in the corresponding BioModel
BioModelInfo bioModelInfo = (BioModelInfo) hashTable.get("bioModelInfo");
SimulationContext[] simContexts = getDocumentManager().getBioModel(bioModelInfo).getSimulationContexts();
if (simContexts != null) {
// may throw UserCancelException
hashTable.put("simContexts", simContexts);
}
}
};
AsynchClientTask task3 = new AsynchClientTask("create math model from biomodel application", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {
@Override
public void run(Hashtable<String, Object> hashTable) throws Exception {
SimulationContext[] simContexts = (SimulationContext[]) hashTable.get("simContexts");
String[] simContextNames = new String[simContexts.length];
if (simContextNames.length == 0) {
throw new RuntimeException("no application is available");
} else {
for (int i = 0; i < simContexts.length; i++) {
simContextNames[i] = simContexts[i].getName();
}
Component component = requester.getComponent();
// Get the simContext names, so that user can choose which simContext math to import
String simContextChoice = (String) PopupGenerator.showListDialog(component, simContextNames, "Please select Application");
if (simContextChoice == null) {
throw UserCancelException.CANCEL_DB_SELECTION;
}
SimulationContext chosenSimContext = null;
for (int i = 0; i < simContexts.length; i++) {
if (simContexts[i].getName().equals(simContextChoice)) {
chosenSimContext = simContexts[i];
break;
}
}
Objects.requireNonNull(chosenSimContext);
BioModelInfo bioModelInfo = (BioModelInfo) hashTable.get("bioModelInfo");
// Get corresponding mathDesc to create new mathModel and return.
String newName = bioModelInfo.getVersion().getName() + "_" + chosenSimContext.getName();
MathDescription bioMathDesc = chosenSimContext.getMathDescription();
MathDescription newMathDesc = null;
newMathDesc = new MathDescription(newName + "_" + (new Random()).nextInt());
newMathDesc.setGeometry(bioMathDesc.getGeometry());
newMathDesc.read_database(new CommentStringTokenizer(bioMathDesc.getVCML_database()));
newMathDesc.isValid();
MathModel newMathModel = new MathModel(null);
newMathModel.setName(newName);
newMathModel.setMathDescription(newMathDesc);
hashTable.put("doc", newMathModel);
}
}
};
taskArray = new AsynchClientTask[] { task1, task2, task3 };
break;
} else {
throw new RuntimeException("Unknown MathModel Document creation option value=" + documentCreationInfo.getOption());
}
}
case GEOMETRY_DOC:
{
if (createOption == VCDocument.GEOM_OPTION_1D || createOption == VCDocument.GEOM_OPTION_2D || createOption == VCDocument.GEOM_OPTION_3D) {
// analytic
AsynchClientTask task1 = new AsynchClientTask("creating analytic geometry", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
@Override
public void run(Hashtable<String, Object> hashTable) throws Exception {
Geometry geometry = new Geometry("Geometry" + (getMdiManager().getNumCreatedDocumentWindows() + 1), documentCreationInfo.getOption());
geometry.getGeometrySpec().addSubVolume(new AnalyticSubVolume("subdomain0", new Expression(1.0)));
geometry.precomputeAll(new GeometryThumbnailImageFactoryAWT());
hashTable.put("doc", geometry);
}
};
taskArray = new AsynchClientTask[] { task1 };
break;
}
if (createOption == VCDocument.GEOM_OPTION_CSGEOMETRY_3D) {
// constructed solid geometry
AsynchClientTask task1 = new AsynchClientTask("creating constructed solid geometry", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {
@Override
public void run(Hashtable<String, Object> hashTable) throws Exception {
Geometry geometry = new Geometry("Geometry" + (getMdiManager().getNumCreatedDocumentWindows() + 1), 3);
Extent extent = geometry.getExtent();
if (extent != null) {
// create a CSGPrimitive of type cube and scale it to the 'extent' components. Use this as the default or background CSGObject (subdomain).
// This can be considered as the equivalent of subdomain (with expression) 1.0 for analyticSubvolume.
// basic cube
CSGPrimitive cube = new CSGPrimitive("cube", CSGPrimitive.PrimitiveType.CUBE);
// scaled cube
double x = extent.getX();
double y = extent.getY();
double z = extent.getZ();
CSGScale scaledCube = new CSGScale("scale", new Vect3d(x / 2.0, y / 2.0, z / 2.0));
scaledCube.setChild(cube);
// translated scaled cube
CSGTranslation translatedScaledCube = new CSGTranslation("translation", new Vect3d(x / 2, y / 2, z / 2));
translatedScaledCube.setChild(scaledCube);
CSGObject csgObject = new CSGObject(null, "subdomain0", 0);
csgObject.setRoot(translatedScaledCube);
geometry.getGeometrySpec().addSubVolume(csgObject, false);
geometry.precomputeAll(new GeometryThumbnailImageFactoryAWT());
hashTable.put("doc", geometry);
}
}
};
taskArray = new AsynchClientTask[] { task1 };
break;
} else {
throw new RuntimeException("Unknown Geometry Document creation option value=" + documentCreationInfo.getOption());
}
}
default:
{
throw new RuntimeException("Unknown default document type: " + documentCreationInfo.getDocumentType());
}
}
return taskArray;
}
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