Example 1 with VCellSortTableModel
use of cbit.vcell.client.desktop.biomodel.VCellSortTableModel in project vcell by virtualcell.
the class TestingFrameworkWindowManager method queryTCritCrossRef.
@SuppressWarnings("serial")
public void queryTCritCrossRef(final TestSuiteInfoNew tsin, final TestCriteriaNew tcrit, final String varName) {
try {
QueryTestCriteriaCrossRefOP queryTestCriteriaCrossRefOP = new QueryTestCriteriaCrossRefOP(tsin.getTSKey(), tcrit.getTCritKey(), varName);
TestCriteriaCrossRefOPResults testCriteriaCrossRefOPResults = (TestCriteriaCrossRefOPResults) getRequestManager().getDocumentManager().doTestSuiteOP(queryTestCriteriaCrossRefOP);
final Vector<TestCriteriaCrossRefOPResults.CrossRefData> xrefDataV = testCriteriaCrossRefOPResults.getCrossRefData();
final TestSuiteInfoNew[] testSuiteInfos = getRequestManager().getDocumentManager().getTestSuiteInfos();
Vector<TestSuiteInfoNew> missingTestSuites = new Vector<TestSuiteInfoNew>();
for (int i = 0; i < testSuiteInfos.length; i++) {
boolean bFound = false;
for (int j = 0; j < xrefDataV.size(); j++) {
if (xrefDataV.elementAt(j).tsVersion.equals(testSuiteInfos[i].getTSID())) {
bFound = true;
break;
}
}
if (!bFound) {
missingTestSuites.add(testSuiteInfos[i]);
}
}
TestCriteriaCrossRefOPResults.CrossRefData xrefDataSource = null;
for (int i = 0; i < xrefDataV.size(); i++) {
if (xrefDataV.elementAt(i).tcritKey.equals(tcrit.getTCritKey())) {
xrefDataSource = xrefDataV.elementAt(i);
break;
}
}
if (xrefDataSource == null) {
throw new RuntimeException("Couldn't find source Test Criteria in query results.");
}
final int numColumns = 8;
final int XREFDATA_ALLOWANCE = 1;
final int TSKEY_ALLOWANCE = 1;
final int XREFDATA_OFFSET = numColumns;
final int TSDATE_OFFSET = 1;
final int VARNAME_OFFSET = 3;
final int TSKEYMISSING_OFFSET = numColumns + 1;
final String[] colNames = new String[numColumns];
final Object[][] sourceRows = new Object[xrefDataV.size() + missingTestSuites.size()][numColumns + XREFDATA_ALLOWANCE + TSKEY_ALLOWANCE];
String sourceTestSuite = null;
colNames[0] = "tsVersion";
colNames[1] = "tsDate";
colNames[2] = "tsBaseVersion";
colNames[3] = "varName";
colNames[4] = "RelErorr";
colNames[5] = "limitRelErorr";
colNames[6] = "limitAbsErorr";
colNames[7] = "AbsErorr";
for (int i = 0; i < xrefDataV.size(); i++) {
sourceRows[i][colNames.length] = xrefDataV.elementAt(i);
if (xrefDataV.elementAt(i).tcritKey.equals(queryTestCriteriaCrossRefOP.getTestCriterium())) {
sourceTestSuite = xrefDataV.elementAt(i).tsVersion;
}
sourceRows[i][0] = xrefDataV.elementAt(i).tsVersion;
sourceRows[i][2] = (xrefDataV.elementAt(i).tsRefVersion == null ? (xrefDataV.elementAt(i).regressionModelID == null ? /* && xrefDataV.elementAt(i).regressionMMref==null*/
"" : "Ref Model exist BUT outside of TestSuites") : xrefDataV.elementAt(i).tsRefVersion);
sourceRows[i][6] = xrefDataV.elementAt(i).maxAbsErorr;
sourceRows[i][5] = xrefDataV.elementAt(i).maxRelErorr;
if (xrefDataV.elementAt(i).varName != null) {
sourceRows[i][VARNAME_OFFSET] = xrefDataV.elementAt(i).varName;
sourceRows[i][4] = xrefDataV.elementAt(i).varCompSummary.getRelativeError();
sourceRows[i][7] = xrefDataV.elementAt(i).varCompSummary.getAbsoluteError();
} else {
sourceRows[i][VARNAME_OFFSET] = "-No Report-";
// "No Report";
sourceRows[i][4] = null;
// "No Report";
sourceRows[i][7] = null;
}
for (int j = 0; j < testSuiteInfos.length; j++) {
if (xrefDataV.elementAt(i).tsVersion.equals(testSuiteInfos[j].getTSID())) {
sourceRows[i][1] = testSuiteInfos[j].getTSDate();
break;
}
}
}
for (int i = xrefDataV.size(); i < sourceRows.length; i++) {
sourceRows[i][0] = missingTestSuites.elementAt(i - xrefDataV.size()).getTSID();
sourceRows[i][TSDATE_OFFSET] = missingTestSuites.elementAt(i - xrefDataV.size()).getTSDate();
sourceRows[i][TSKEYMISSING_OFFSET] = missingTestSuites.elementAt(i - xrefDataV.size()).getTSKey();
}
// Arrays.sort(rows,
// new Comparator<Object[]>(){
// public int compare(Object[] o1, Object[] o2) {
// return ((String)o1[0]).compareToIgnoreCase((String)o2[0]);
// // if(o1[0].equals(o2[0])){
// // return o1[3].compareToIgnoreCase(o2[3]);
// // }
// // return o1[0].compareToIgnoreCase(o2[0]);
// }
// }
// );
final VCellSortTableModel<Object[]> tableModel = new VCellSortTableModel<Object[]>(colNames) {
public Class<?> getColumnClass(int columnIndex) {
if (columnIndex == TSDATE_OFFSET) {
return Date.class;
} else if (columnIndex >= 4 && columnIndex <= 7) {
return Double.class;
}
return String.class;
}
public boolean isCellEditable(int row, int column) {
return false;
}
public Object getValueAt(int rowIndex, int columnIndex) {
return getValueAt(rowIndex)[columnIndex];
}
public Comparator<Object[]> getComparator(final int col, final boolean ascending) {
return new Comparator<Object[]>() {
public int compare(Object[] o1, Object[] o2) {
if (o1[col] == null && o2[col] == null) {
return 0;
}
// if(ascending){
if (o1[col] == null) {
return 1;
}
if (o2[col] == null) {
return -1;
}
// }
if (getColumnClass(col).equals(String.class)) {
if (ascending) {
return ((String) o1[col]).compareToIgnoreCase(((String) o2[col]));
} else {
return ((String) o2[col]).compareToIgnoreCase(((String) o1[col]));
}
} else if (getColumnClass(col).equals(Date.class)) {
if (ascending) {
return ((Date) o1[col]).compareTo(((Date) o2[col]));
}
return ((Date) o2[col]).compareTo(((Date) o1[col]));
} else if (getColumnClass(col).equals(Double.class)) {
if (ascending) {
return ((Double) o1[col]).compareTo(((Double) o2[col]));
}
return ((Double) o2[col]).compareTo(((Double) o1[col]));
}
throw new RuntimeException("TestSuite XRef Query unexpecte column class " + getColumnClass(col).getName());
}
};
}
};
tableModel.setData(Arrays.asList(sourceRows));
// Create table
final JSortTable table = new JSortTable();
table.setModel(tableModel);
table.setSelectionMode(ListSelectionModel.MULTIPLE_INTERVAL_SELECTION);
final JScrollPane scrollPaneContentPane = new JScrollPane(table);
table.setPreferredScrollableViewportSize(new Dimension(500, 250));
table.getColumnModel().getColumn(TSDATE_OFFSET).setCellRenderer(new DefaultTableCellRenderer() {
// DateFormat formatter = DateFormat.getDateTimeInstance();
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
return super.getTableCellRendererComponent(table, (value == null ? null : ((Date) value).toString()), /*formatter.format((Date)value)*/
isSelected, hasFocus, row, column);
}
});
DefaultTableCellRenderer dtcr = new DefaultTableCellRenderer() {
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
return super.getTableCellRendererComponent(table, (value == null ? null : ((Double) value).toString()), /*formatter.format((Date)value)*/
isSelected, hasFocus, row, column);
}
};
table.getColumnModel().getColumn(4).setCellRenderer(dtcr);
table.getColumnModel().getColumn(5).setCellRenderer(dtcr);
table.getColumnModel().getColumn(6).setCellRenderer(dtcr);
table.getColumnModel().getColumn(7).setCellRenderer(dtcr);
// table.getColumnModel().getColumn(4).setCellRenderer(
// new DefaultTableCellRenderer(){
// public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
// return super.getTableCellRendererComponent(table,(value == null?null:((Double)value).toString())/*formatter.format((Date)value)*/, isSelected, hasFocus, row, column);
// }
// }
// );
// table.getTableHeader().setReorderingAllowed(false);
// Popup Menu
final TestCriteriaCrossRefOPResults.CrossRefData xrefDataSourceFinal = xrefDataSource;
final JPopupMenu queryPopupMenu = new JPopupMenu();
final JMenuItem changeLimitsMenuItem = new JMenuItem("Change Selected Error Limits...");
final String OPEN_MODEL = "Open Model(s)";
final JMenuItem openModelMenuItem = new JMenuItem(OPEN_MODEL);
final String OPEN_REGRREFMODEL = "Open Regr Ref Model(s)";
final JMenuItem openRegrRefModelMenuItem = new JMenuItem(OPEN_REGRREFMODEL);
final String SELECT_REF_IN_TREE = "Select in Tree View";
final JMenuItem showInTreeMenuItem = new JMenuItem(SELECT_REF_IN_TREE);
final String SELECT_REGR_REF_IN_TREE = "Select RegrRef TCase in Tree View";
final JMenuItem showRegrRefInTreeMenuItem = new JMenuItem(SELECT_REGR_REF_IN_TREE);
queryPopupMenu.add(changeLimitsMenuItem);
queryPopupMenu.add(openModelMenuItem);
queryPopupMenu.add(openRegrRefModelMenuItem);
queryPopupMenu.add(showInTreeMenuItem);
queryPopupMenu.add(showRegrRefInTreeMenuItem);
ActionListener showInTreeActionListener = new ActionListener() {
public void actionPerformed(ActionEvent actionEvent) {
int[] selectedRows = table.getSelectedRows();
if (selectedRows == null || selectedRows.length != 1) {
PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "Action " + actionEvent.getActionCommand() + " accepts only single selection!");
return;
}
TestCriteriaCrossRefOPResults.CrossRefData xrefData = (TestCriteriaCrossRefOPResults.CrossRefData) tableModel.getValueAt(selectedRows[0], XREFDATA_OFFSET);
BigDecimal missingTSKey = (BigDecimal) tableModel.getValueAt(selectedRows[0], TSKEYMISSING_OFFSET);
if (actionEvent.getActionCommand().equals(SELECT_REF_IN_TREE)) {
getTestingFrameworkWindowPanel().selectInTreeView((xrefData != null ? xrefData.tsKey : missingTSKey), (xrefData != null ? xrefData.tcaseKey : null), (xrefData != null ? xrefData.tcritKey : null));
} else if (actionEvent.getActionCommand().equals(SELECT_REGR_REF_IN_TREE)) {
if (xrefData == null) {
PopupGenerator.showErrorDialog(getComponent(), "No Regression Reference info available.");
return;
}
getTestingFrameworkWindowPanel().selectInTreeView((xrefData != null ? xrefData.regressionModelTSuiteID : null), (xrefData != null ? xrefData.regressionModelTCaseID : null), (xrefData != null ? xrefData.regressionModelTCritID : null));
}
ChildWindow childWindow = TFWFinder.findChildWindowManager(getComponent()).getChildWindowFromContentPane(scrollPaneContentPane);
if (childWindow != null) {
childWindow.show();
}
}
};
showInTreeMenuItem.addActionListener(showInTreeActionListener);
showRegrRefInTreeMenuItem.addActionListener(showInTreeActionListener);
ActionListener openModelsActionListener = new ActionListener() {
public void actionPerformed(ActionEvent actionEvent) {
int[] selectedRows = table.getSelectedRows();
String failureS = "";
TestCriteriaCrossRefOPResults.CrossRefData xrefData = null;
int openCount = 0;
for (int i = 0; i < selectedRows.length; i++) {
try {
xrefData = (TestCriteriaCrossRefOPResults.CrossRefData) tableModel.getValueAt(selectedRows[i], XREFDATA_OFFSET);
if (xrefData != null && (actionEvent.getActionCommand().equals(OPEN_REGRREFMODEL) ? xrefData.regressionModelID != null : true)) {
openCount += 1;
VCDocumentInfo vcDocInfo = null;
if (xrefData.isBioModel) {
vcDocInfo = getRequestManager().getDocumentManager().getBioModelInfo(new KeyValue((actionEvent.getActionCommand().equals(OPEN_REGRREFMODEL) ? xrefData.regressionModelID : xrefData.modelID)));
} else {
vcDocInfo = getRequestManager().getDocumentManager().getMathModelInfo(new KeyValue((actionEvent.getActionCommand().equals(OPEN_REGRREFMODEL) ? xrefData.regressionModelID : xrefData.modelID)));
}
getRequestManager().openDocument(vcDocInfo, TestingFrameworkWindowManager.this, true);
}
} catch (Exception e) {
failureS += failureS + "key=" + xrefData.modelID + " " + e.getMessage() + "\n";
e.printStackTrace();
}
}
if (failureS.length() > 0 || openCount == 0) {
PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "Failed to open some models\n" + failureS + (openCount == 0 ? "Selection(s) had no model(s)" : ""));
}
ChildWindow childWindow = TFWFinder.findChildWindowManager(getComponent()).getChildWindowFromContentPane(scrollPaneContentPane);
if (childWindow != null) {
childWindow.show();
}
}
};
openModelMenuItem.addActionListener(openModelsActionListener);
openRegrRefModelMenuItem.addActionListener(openModelsActionListener);
changeLimitsMenuItem.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent actionEvent) {
int[] selectedRows = table.getSelectedRows();
Vector<TestCriteriaCrossRefOPResults.CrossRefData> changeTCritV = new Vector<TestCriteriaCrossRefOPResults.CrossRefData>();
for (int i = 0; i < selectedRows.length; i++) {
TestCriteriaCrossRefOPResults.CrossRefData xrefData = (TestCriteriaCrossRefOPResults.CrossRefData) tableModel.getValueAt(selectedRows[i], XREFDATA_OFFSET);
if (xrefData != null) {
boolean bFound = false;
for (int j = 0; j < changeTCritV.size(); j++) {
if (changeTCritV.elementAt(j).tcritKey.equals(xrefData.tcritKey)) {
bFound = true;
break;
}
}
if (!bFound) {
changeTCritV.add(xrefData);
}
}
}
if (changeTCritV.size() > 0) {
Double relativeErrorLimit = null;
Double absoluteErrorLimit = null;
while (true) {
try {
String ret = PopupGenerator.showInputDialog(getComponent(), "Enter new TestCriteria Error Limits for '" + xrefDataSourceFinal.simName + "'. '-'(dash) to keep original value.", "RelativeErrorLimit,AbsoluteErrorLimit");
int commaPosition = ret.indexOf(',');
if (commaPosition == -1) {
throw new Exception("No comma found separating RelativeErrorLimit AbsoluteErrorLimit");
}
if (commaPosition != ret.lastIndexOf(',')) {
throw new Exception("Only 1 comma allowed separating RelativeErrorLimit and AbsoluteErrorLimit");
}
final String KEEP_ORIGINAL_VALUE = "-";
String relativeErrorS = ret.substring(0, commaPosition);
String absoluteErrorS = ret.substring(commaPosition + 1, ret.length());
if (!relativeErrorS.equals(KEEP_ORIGINAL_VALUE)) {
relativeErrorLimit = Double.parseDouble(relativeErrorS);
}
if (!absoluteErrorS.equals(KEEP_ORIGINAL_VALUE)) {
absoluteErrorLimit = Double.parseDouble(absoluteErrorS);
}
if ((relativeErrorLimit != null && relativeErrorLimit <= 0) || (absoluteErrorLimit != null && absoluteErrorLimit <= 0)) {
throw new Exception("Error limits must be greater than 0");
}
break;
} catch (UserCancelException e) {
ChildWindow childWindow = TFWFinder.findChildWindowManager(getComponent()).getChildWindowFromContentPane(scrollPaneContentPane);
if (childWindow != null) {
childWindow.show();
}
return;
} catch (Exception e) {
PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "Error parsing Error Limits\n" + e.getMessage());
}
}
double[] relErrorLimitArr = new double[changeTCritV.size()];
double[] absErrorLimitArr = new double[changeTCritV.size()];
Object[][] rows = new Object[changeTCritV.size()][5];
for (int j = 0; j < changeTCritV.size(); j++) {
relErrorLimitArr[j] = (relativeErrorLimit != null ? relativeErrorLimit.doubleValue() : changeTCritV.elementAt(j).maxRelErorr);
absErrorLimitArr[j] = (absoluteErrorLimit != null ? absoluteErrorLimit.doubleValue() : changeTCritV.elementAt(j).maxAbsErorr);
rows[j][2] = new Double(relErrorLimitArr[j]);
rows[j][4] = new Double(absErrorLimitArr[j]);
rows[j][1] = new Double(changeTCritV.elementAt(j).maxRelErorr);
rows[j][3] = new Double(changeTCritV.elementAt(j).maxAbsErorr);
rows[j][0] = changeTCritV.elementAt(j).tsVersion;
}
try {
PopupGenerator.showComponentOKCancelTableList(getComponent(), "Confirm Error Limit Changes", new String[] { "TSVersion", "Orig RelErrorLimit", "New RelErrorLimit", "Orig AbsErrorLimit", "New AbsErrorLimit" }, rows, null);
} catch (UserCancelException e) {
ChildWindow childWindow = TFWFinder.findChildWindowManager(getComponent()).getChildWindowFromContentPane(scrollPaneContentPane);
if (childWindow != null) {
childWindow.show();
}
return;
}
// Get information needed to generate new TestCriteria Reports
final String YES_ANSWER = "Yes";
Hashtable<TestSuiteInfoNew, Vector<TestCriteriaCrossRefOPResults.CrossRefData>> genReportHash = null;
String genRepResult = PopupGenerator.showWarningDialog(getComponent(), "Generate Reports for changed Test Criterias?", new String[] { YES_ANSWER, "No" }, YES_ANSWER);
if (genRepResult != null && genRepResult.equals(YES_ANSWER)) {
genReportHash = new Hashtable<TestSuiteInfoNew, Vector<TestCriteriaCrossRefOPResults.CrossRefData>>();
for (int i = 0; i < changeTCritV.size(); i++) {
boolean bFound = false;
for (int j = 0; j < testSuiteInfos.length; j++) {
if (changeTCritV.elementAt(i).tsVersion.equals(testSuiteInfos[j].getTSID())) {
bFound = true;
Vector<TestCriteriaCrossRefOPResults.CrossRefData> tempV = genReportHash.get(testSuiteInfos[j]);
if (tempV == null) {
tempV = new Vector<TestCriteriaCrossRefOPResults.CrossRefData>();
genReportHash.put(testSuiteInfos[j], tempV);
}
tempV.add(changeTCritV.elementAt(i));
}
}
if (!bFound) {
PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "Couldn't find testsuiteinfo for testcriteria");
return;
}
}
}
BigDecimal[] changeTCritBDArr = new BigDecimal[changeTCritV.size()];
for (int i = 0; i < changeTCritV.size(); i++) {
changeTCritBDArr[i] = changeTCritV.elementAt(i).tcritKey;
}
ChangeTestCriteriaErrorLimitOP changeTestCriteriaErrorLimitOP = new ChangeTestCriteriaErrorLimitOP(changeTCritBDArr, absErrorLimitArr, relErrorLimitArr);
try {
getTestingFrameworkWindowPanel().getDocumentManager().doTestSuiteOP(changeTestCriteriaErrorLimitOP);
} catch (Exception e) {
PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "Failed Changing Error limits for selected " + xrefDataSourceFinal.simName + "\n" + e.getMessage());
return;
}
ChildWindow childWindow = TFWFinder.findChildWindowManager(getComponent()).getChildWindowFromContentPane(scrollPaneContentPane);
if (childWindow != null) {
childWindow.close();
}
getTestingFrameworkWindowPanel().refreshTree((TestSuiteInfoNew) null);
if (genReportHash != null) {
updateReports(genReportHash);
} else {
new Thread(new Runnable() {
public void run() {
TestingFrameworkWindowManager.this.queryTCritCrossRef(tsin, tcrit, varName);
}
}).start();
}
} else {
PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "No selected rows contain Test Criteria.");
}
}
});
table.addMouseListener(new MouseAdapter() {
@Override
public void mouseClicked(MouseEvent e) {
super.mouseClicked(e);
checkPopup(e);
}
@Override
public void mousePressed(MouseEvent e) {
super.mousePressed(e);
checkPopup(e);
}
@Override
public void mouseReleased(MouseEvent e) {
super.mouseReleased(e);
checkPopup(e);
}
private void checkPopup(MouseEvent mouseEvent) {
if (mouseEvent.isPopupTrigger()) {
// Not use because popupmenu will not show at edge
// if(table.getSelectedRowCount() <= 1){
// table.getSelectionModel().setSelectionInterval(table.rowAtPoint(mouseEvent.getPoint()),table.rowAtPoint(mouseEvent.getPoint()));
// }
doPopup(mouseEvent);
} else {
queryPopupMenu.setVisible(false);
}
}
private void doPopup(MouseEvent mouseEvent) {
// queryPopupMenu.add(showInTreeMenuItem);
if (table.getSelectedRowCount() == 0) {
changeLimitsMenuItem.setEnabled(false);
openModelMenuItem.setEnabled(false);
openRegrRefModelMenuItem.setEnabled(false);
showInTreeMenuItem.setEnabled(false);
showRegrRefInTreeMenuItem.setEnabled(false);
} else {
changeLimitsMenuItem.setEnabled(true);
openModelMenuItem.setEnabled(true);
openRegrRefModelMenuItem.setEnabled(true);
showInTreeMenuItem.setEnabled(true);
if (table.getSelectedRowCount() == 1) {
TestCriteriaCrossRefOPResults.CrossRefData xrefData = (TestCriteriaCrossRefOPResults.CrossRefData) tableModel.getValueAt(table.getSelectedRow(), numColumns);
showRegrRefInTreeMenuItem.setEnabled(xrefData != null && xrefData.regressionModelID != null && xrefData.tsRefVersion != null);
}
}
queryPopupMenu.show(mouseEvent.getComponent(), mouseEvent.getPoint().x, mouseEvent.getPoint().y);
}
});
String title = (xrefDataSource.isBioModel ? "BM" : "MM") + " " + xrefDataSource.tcSolutionType + " (" + sourceTestSuite + ") " + " \"" + (xrefDataSource.isBioModel ? xrefDataSource.bmName : xrefDataSource.mmName) + "\" :: " + (xrefDataSource.isBioModel ? "app=\"" + xrefDataSource.bmAppName + "\" :: sim=\"" + xrefDataSource.simName + "\"" : "sim=\"" + xrefDataSource.simName + "\"");
ChildWindow childWindow = TFWFinder.findChildWindowManager(getComponent()).addChildWindow(scrollPaneContentPane, scrollPaneContentPane, title);
// childWindow.setSize(600,400);
childWindow.setIsCenteredOnParent();
childWindow.pack();
childWindow.setResizable(true);
childWindow.show();
} catch (DataAccessException e) {
e.printStackTrace();
PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, "Error Query TestCriteria Cross Ref:\n" + e.getMessage());
}
}
Also used :
KeyValue(org.vcell.util.document.KeyValue)
ActionEvent(java.awt.event.ActionEvent)
UserCancelException(org.vcell.util.UserCancelException)
Comparator(java.util.Comparator)
DefaultTableCellRenderer(javax.swing.table.DefaultTableCellRenderer)
VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel)
Component(java.awt.Component)
JComponent(javax.swing.JComponent)
JMenuItem(javax.swing.JMenuItem)
Vector(java.util.Vector)
CrossRefData(cbit.vcell.numericstest.TestCriteriaCrossRefOPResults.CrossRefData)
DataAccessException(org.vcell.util.DataAccessException)
JScrollPane(javax.swing.JScrollPane)
QueryTestCriteriaCrossRefOP(cbit.vcell.numericstest.QueryTestCriteriaCrossRefOP)
MouseEvent(java.awt.event.MouseEvent)
Hashtable(java.util.Hashtable)
MouseAdapter(java.awt.event.MouseAdapter)
TestCriteriaCrossRefOPResults(cbit.vcell.numericstest.TestCriteriaCrossRefOPResults)
Dimension(java.awt.Dimension)
ChildWindow(cbit.vcell.client.ChildWindowManager.ChildWindow)
Date(java.util.Date)
JPopupMenu(javax.swing.JPopupMenu)
BigDecimal(java.math.BigDecimal)
ObjectNotFoundException(org.vcell.util.ObjectNotFoundException)
DataAccessException(org.vcell.util.DataAccessException)
UserCancelException(org.vcell.util.UserCancelException)
CrossRefData(cbit.vcell.numericstest.TestCriteriaCrossRefOPResults.CrossRefData)
JSortTable(org.vcell.util.gui.sorttable.JSortTable)
ActionListener(java.awt.event.ActionListener)
VCDocumentInfo(org.vcell.util.document.VCDocumentInfo)
ChangeTestCriteriaErrorLimitOP(cbit.vcell.numericstest.ChangeTestCriteriaErrorLimitOP)
JTable(javax.swing.JTable)
TestSuiteInfoNew(cbit.vcell.numericstest.TestSuiteInfoNew)
Example 2 with VCellSortTableModel
use of cbit.vcell.client.desktop.biomodel.VCellSortTableModel in project vcell by virtualcell.
the class ViewObservablesMapPanel method initialize.
private void initialize() {
try {
// --------------------------------------- the split panels
setName("ViewGeneratedSpeciesPanel");
setLayout(new BorderLayout());
JPanel topPanel = new JPanel();
topPanel.setLayout(new GridBagLayout());
JPanel bottomPanel = new JPanel();
bottomPanel.setLayout(new GridBagLayout());
JSplitPane splitPaneHorizontal = new JSplitPane(JSplitPane.VERTICAL_SPLIT);
splitPaneHorizontal.setDividerSize(10);
splitPaneHorizontal.setOneTouchExpandable(true);
splitPaneHorizontal.setDividerLocation(260);
splitPaneHorizontal.setResizeWeight(0.5);
splitPaneHorizontal.setTopComponent(topPanel);
splitPaneHorizontal.setBottomComponent(bottomPanel);
add(splitPaneHorizontal, BorderLayout.CENTER);
// ---------------------------------------- species shape panel
shapePanelSpecies = new LargeShapePanel() {
@Override
public void paintComponent(Graphics g) {
super.paintComponent(g);
if (spls != null) {
spls.paintSelf(g);
}
}
@Override
public DisplayMode getDisplayMode() {
return DisplayMode.other;
}
@Override
public RuleAnalysisChanged hasStateChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasStateChanged(MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasBondChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasBondChanged(MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasNoMatch(String reactionRuleName, MolecularTypePattern mtp) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasNoMatch(MolecularTypePattern molecularTypePattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleParticipantSignature getSignature() {
return null;
}
@Override
public GroupingCriteria getCriteria() {
return null;
}
@Override
public boolean isViewSingleRow() {
return true;
}
};
shapePanelSpecies.setLayout(new GridBagLayout());
shapePanelSpecies.setBackground(Color.white);
// not really editable but we don't want the brown contours here
shapePanelSpecies.setEditable(true);
shapePanelSpecies.setShowMoleculeColor(true);
shapePanelSpecies.setShowNonTrivialOnly(true);
Border loweredBevelBorder = BorderFactory.createLoweredBevelBorder();
JScrollPane scrollPaneSpecies = new JScrollPane(shapePanelSpecies);
scrollPaneSpecies.setBorder(loweredBevelBorder);
scrollPaneSpecies.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
scrollPaneSpecies.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_NEVER);
JPanel optionsPanelSpecies = new JPanel();
optionsPanelSpecies.setLayout(new GridBagLayout());
getZoomSmallerButtonSpecies().setEnabled(true);
getZoomLargerButtonSpecies().setEnabled(true);
shapePanelSpecies.zoomSmaller();
shapePanelSpecies.zoomSmaller();
GridBagConstraints gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 0;
gbc.insets = new Insets(0, 0, 0, 10);
gbc.anchor = GridBagConstraints.WEST;
optionsPanelSpecies.add(getZoomLargerButtonSpecies(), gbc);
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 1;
gbc.insets = new Insets(2, 0, 4, 10);
gbc.anchor = GridBagConstraints.WEST;
optionsPanelSpecies.add(getZoomSmallerButtonSpecies(), gbc);
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 2;
gbc.weightx = 1;
// fake cell used for filling all the vertical empty space
gbc.weighty = 1;
gbc.anchor = GridBagConstraints.WEST;
gbc.insets = new Insets(4, 4, 4, 10);
optionsPanelSpecies.add(new JLabel(""), gbc);
JPanel containerOfScrollPanelSpecies = new JPanel();
containerOfScrollPanelSpecies.setLayout(new BorderLayout());
containerOfScrollPanelSpecies.add(optionsPanelSpecies, BorderLayout.WEST);
containerOfScrollPanelSpecies.add(scrollPaneSpecies, BorderLayout.CENTER);
Dimension dimS = new Dimension(500, 125);
// dimension of shape panel
containerOfScrollPanelSpecies.setPreferredSize(dimS);
containerOfScrollPanelSpecies.setMinimumSize(dimS);
containerOfScrollPanelSpecies.setMaximumSize(dimS);
shapePanelObservable = new LargeShapePanel() {
@Override
public void paintComponent(Graphics g) {
super.paintComponent(g);
for (SpeciesPatternLargeShape sps : spsList) {
if (sps == null) {
continue;
}
sps.paintSelf(g);
}
}
@Override
public DisplayMode getDisplayMode() {
return DisplayMode.other;
}
@Override
public RuleAnalysisChanged hasStateChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasStateChanged(MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasBondChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasBondChanged(MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasNoMatch(String reactionRuleName, MolecularTypePattern mtp) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasNoMatch(MolecularTypePattern molecularTypePattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleParticipantSignature getSignature() {
return null;
}
@Override
public GroupingCriteria getCriteria() {
return null;
}
@Override
public boolean isViewSingleRow() {
return true;
}
};
//
DefaultScrollTableCellRenderer rbmSpeciesPatternCellRenderer = new DefaultScrollTableCellRenderer() {
@Override
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
if (table.getModel() instanceof GeneratedSpeciesTableModel2) {
Object selectedObject = null;
if (table.getModel() == speciesTableModel) {
selectedObject = speciesTableModel.getValueAt(row);
}
if (selectedObject != null) {
if (selectedObject instanceof GeneratedSpeciesTableRow && value instanceof String) {
SpeciesPattern sp = ((GeneratedSpeciesTableRow) selectedObject).getSpecies().getSpeciesPattern();
String text = "<html>";
text += RbmTableRenderer.toHtml(sp, isSelected);
text += "</html>";
setText(text);
}
}
}
return this;
}
};
// shapePanelObservable.setLayout(null);
shapePanelObservable.setLayout(new GridBagLayout());
shapePanelObservable.setBackground(Color.white);
shapePanelObservable.setEditable(true);
shapePanelObservable.setShowMoleculeColor(true);
shapePanelObservable.setShowNonTrivialOnly(true);
JScrollPane scrollPaneObservable = new JScrollPane(shapePanelObservable);
scrollPaneObservable.setBorder(loweredBevelBorder);
scrollPaneObservable.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
scrollPaneObservable.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_NEVER);
JPanel optionsPanelObservable = new JPanel();
optionsPanelObservable.setLayout(new GridBagLayout());
getZoomSmallerButtonObservable().setEnabled(true);
getZoomLargerButtonObservable().setEnabled(true);
shapePanelObservable.zoomSmaller();
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 0;
gbc.insets = new Insets(0, 0, 0, 10);
gbc.anchor = GridBagConstraints.WEST;
optionsPanelObservable.add(getZoomLargerButtonObservable(), gbc);
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 1;
gbc.insets = new Insets(2, 0, 4, 10);
gbc.anchor = GridBagConstraints.WEST;
optionsPanelObservable.add(getZoomSmallerButtonObservable(), gbc);
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 2;
gbc.weightx = 1;
// fake cell used for filling all the vertical empty space
gbc.weighty = 1;
gbc.anchor = GridBagConstraints.WEST;
gbc.insets = new Insets(4, 4, 4, 10);
optionsPanelObservable.add(new JLabel(""), gbc);
JPanel containerOfScrollPanelObservable = new JPanel();
containerOfScrollPanelObservable.setLayout(new BorderLayout());
containerOfScrollPanelObservable.add(optionsPanelObservable, BorderLayout.WEST);
containerOfScrollPanelObservable.add(scrollPaneObservable, BorderLayout.CENTER);
Dimension dimO = new Dimension(500, 100);
// dimension of shape panel
containerOfScrollPanelObservable.setPreferredSize(dimO);
containerOfScrollPanelObservable.setMinimumSize(dimO);
containerOfScrollPanelObservable.setMaximumSize(dimO);
// -------------- connection between tables, table models, selection models, renderers, event handlers
speciesTable = new EditorScrollTable();
speciesTableModel = new GeneratedSpeciesTableModel2(speciesTable, owner);
speciesTable.setModel(speciesTableModel);
speciesTable.getSelectionModel().addListSelectionListener(eventHandlerS);
speciesTable.getModel().addTableModelListener(eventHandlerS);
observablesTable = new EditorScrollTable();
observablesTableModel = new ObservablesGroupTableModel(observablesTable, owner, speciesTableModel);
observablesTable.setModel(observablesTableModel);
observablesTable.getSelectionModel().addListSelectionListener(eventHandlerO);
observablesTable.getModel().addTableModelListener(eventHandlerO);
speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColDefinition).setCellRenderer(rbmSpeciesPatternCellRenderer);
DefaultTableCellRenderer rightRenderer = new DefaultTableCellRenderer();
rightRenderer.setHorizontalAlignment(JLabel.RIGHT);
// speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColMultiplier).setCellRenderer(rightRenderer); // right align
// left column wide enough for title
speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColMultiplier).setMaxWidth(70);
speciesTable.addMouseMotionListener(new // add toolTipText for each table cell
MouseMotionAdapter() {
public void mouseMoved(MouseEvent e) {
Point p = e.getPoint();
int row = speciesTable.rowAtPoint(p);
int column = speciesTable.columnAtPoint(p);
speciesTable.setToolTipText(String.valueOf(speciesTable.getValueAt(row, column)));
}
});
// ---------------------------------------------- top panel
int gridy = 0;
gbc = new java.awt.GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.weightx = 1.0;
gbc.weighty = 1.0;
gbc.gridwidth = 8;
gbc.fill = GridBagConstraints.BOTH;
gbc.insets = new Insets(4, 4, 4, 4);
observablesTable.setPreferredScrollableViewportSize(new Dimension(400, 200));
topPanel.add(observablesTable.getEnclosingScrollPane(), gbc);
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.anchor = GridBagConstraints.LINE_END;
gbc.insets = new Insets(4, 4, 4, 4);
topPanel.add(new JLabel("Search "), gbc);
textFieldSearchObservables = new JTextField(70);
textFieldSearchObservables.addActionListener(eventHandlerO);
textFieldSearchObservables.getDocument().addDocumentListener(eventHandlerO);
textFieldSearchObservables.putClientProperty("JTextField.variant", "search");
gbc = new java.awt.GridBagConstraints();
gbc.weightx = 1.0;
gbc.gridx = 1;
gbc.gridy = gridy;
gbc.gridwidth = 3;
gbc.anchor = GridBagConstraints.LINE_START;
gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
gbc.insets = new Insets(4, 0, 4, 4);
topPanel.add(textFieldSearchObservables, gbc);
gbc = new GridBagConstraints();
gbc.gridx = 4;
gbc.gridy = gridy;
gbc.fill = GridBagConstraints.HORIZONTAL;
gbc.insets = new Insets(4, 4, 4, 10);
topPanel.add(totalObservablesLabel, gbc);
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
// gbc.weightx = 1.0;
gbc.gridwidth = 8;
gbc.anchor = GridBagConstraints.LINE_END;
gbc.fill = java.awt.GridBagConstraints.BOTH;
gbc.insets = new Insets(4, 4, 4, 4);
topPanel.add(containerOfScrollPanelObservable, gbc);
// -------------------------------------------- bottom panel
gridy = 0;
gbc = new java.awt.GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.weightx = 1.0;
gbc.weighty = 1.0;
gbc.gridwidth = 8;
gbc.fill = GridBagConstraints.BOTH;
gbc.insets = new Insets(4, 4, 4, 4);
speciesTable.setPreferredScrollableViewportSize(new Dimension(400, 200));
bottomPanel.add(speciesTable.getEnclosingScrollPane(), gbc);
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.anchor = GridBagConstraints.LINE_END;
gbc.insets = new Insets(4, 4, 4, 4);
bottomPanel.add(new JLabel("Search "), gbc);
textFieldSearchSpecies = new JTextField(70);
textFieldSearchSpecies.addActionListener(eventHandlerS);
textFieldSearchSpecies.getDocument().addDocumentListener(eventHandlerS);
textFieldSearchSpecies.putClientProperty("JTextField.variant", "search");
gbc = new java.awt.GridBagConstraints();
gbc.weightx = 1.0;
gbc.gridx = 1;
gbc.gridy = gridy;
gbc.gridwidth = 3;
gbc.anchor = GridBagConstraints.LINE_START;
gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
gbc.insets = new Insets(4, 0, 4, 4);
bottomPanel.add(textFieldSearchSpecies, gbc);
gbc = new GridBagConstraints();
gbc.gridx = 4;
gbc.gridy = gridy;
gbc.fill = GridBagConstraints.HORIZONTAL;
gbc.insets = new Insets(4, 4, 4, 10);
bottomPanel.add(totalSpeciesLabel, gbc);
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
// gbc.weightx = 1.0;
gbc.gridwidth = 8;
gbc.anchor = GridBagConstraints.LINE_END;
gbc.fill = java.awt.GridBagConstraints.BOTH;
gbc.insets = new Insets(4, 4, 4, 4);
bottomPanel.add(containerOfScrollPanelSpecies, gbc);
// rendering the small shapes of the flattened species in the Depiction column of this viewer table)
// TODO: this renderer is almost identical with the one in BioModelEditorModelPanel (which paints the small shapes
// of a species context in the Depiction column of the species table)
DefaultScrollTableCellRenderer rbmSpeciesShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {
SpeciesPatternSmallShape spss = null;
@Override
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
if (table.getModel() instanceof VCellSortTableModel<?>) {
Object selectedObject = null;
if (table.getModel() == speciesTableModel) {
selectedObject = speciesTableModel.getValueAt(row);
}
if (selectedObject != null) {
if (selectedObject instanceof GeneratedSpeciesTableRow) {
SpeciesContext sc = ((GeneratedSpeciesTableRow) selectedObject).getSpecies();
// sp cannot be null
SpeciesPattern sp = sc.getSpeciesPattern();
Graphics panelContext = table.getGraphics();
spss = new SpeciesPatternSmallShape(4, 2, sp, panelContext, sc, isSelected, issueManager);
}
} else {
spss = null;
}
}
setText("");
return this;
}
@Override
public void paintComponent(Graphics g) {
super.paintComponent(g);
if (spss != null) {
spss.paintSelf(g);
}
}
};
speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColDepiction).setCellRenderer(rbmSpeciesShapeDepictionCellRenderer);
speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColDepiction).setPreferredWidth(400);
speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColDepiction).setMinWidth(400);
speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColDefinition).setPreferredWidth(30);
speciesTable.setAutoResizeMode(JTable.AUTO_RESIZE_LAST_COLUMN);
DefaultScrollTableCellRenderer rbmObservableShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {
List<SpeciesPatternSmallShape> spssList = new ArrayList<SpeciesPatternSmallShape>();
SpeciesPatternSmallShape spss = null;
@Override
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
if (table.getModel() instanceof VCellSortTableModel<?>) {
Object selectedObject = null;
if (table.getModel() == observablesTableModel) {
selectedObject = observablesTableModel.getValueAt(row);
}
if (selectedObject != null && selectedObject instanceof ObservablesGroupTableRow) {
ObservablesGroupTableRow ogtr = ((ObservablesGroupTableRow) selectedObject);
String obsName = ogtr.getObservableGroupObject().getObservableGroupName();
RbmObservable observable = ogtr.getObservable(obsName);
Graphics panelContext = table.getGraphics();
int xPos = 4;
spssList.clear();
for (int i = 0; i < observable.getSpeciesPatternList().size(); i++) {
SpeciesPattern sp = observable.getSpeciesPatternList().get(i);
spss = new SpeciesPatternSmallShape(xPos, 2, sp, panelContext, observable, isSelected, issueManager);
xPos += spss.getWidth() + 6;
spssList.add(spss);
}
} else {
spssList.clear();
}
}
setText("");
return this;
}
@Override
public void paintComponent(Graphics g) {
super.paintComponent(g);
for (SpeciesPatternSmallShape spss : spssList) {
if (spss == null) {
continue;
}
spss.paintSelf(g);
}
}
};
observablesTable.getColumnModel().getColumn(ObservablesGroupTableModel.iColDepiction).setCellRenderer(rbmObservableShapeDepictionCellRenderer);
observablesTable.getColumnModel().getColumn(ObservablesGroupTableModel.iColDepiction).setPreferredWidth(150);
observablesTable.getColumnModel().getColumn(ObservablesGroupTableModel.iColDepiction).setMinWidth(150);
observablesTable.getColumnModel().getColumn(ObservablesGroupTableModel.iColDefinition).setPreferredWidth(80);
observablesTable.getColumnModel().getColumn(ObservablesGroupTableModel.iColExpression).setPreferredWidth(100);
observablesTable.setAutoResizeMode(JTable.AUTO_RESIZE_LAST_COLUMN);
} catch (java.lang.Throwable ivjExc) {
handleException(ivjExc);
}
}
Also used :
JPanel(javax.swing.JPanel)
RuleParticipantSignature(cbit.vcell.model.RuleParticipantSignature)
GridBagConstraints(java.awt.GridBagConstraints)
Insets(java.awt.Insets)
GridBagLayout(java.awt.GridBagLayout)
SpeciesPatternSmallShape(cbit.vcell.graph.SpeciesPatternSmallShape)
SpeciesContext(cbit.vcell.model.SpeciesContext)
JTextField(javax.swing.JTextField)
SpeciesPatternLargeShape(cbit.vcell.graph.SpeciesPatternLargeShape)
SpeciesPattern(org.vcell.model.rbm.SpeciesPattern)
LargeShapePanel(cbit.vcell.graph.gui.LargeShapePanel)
DefaultTableCellRenderer(javax.swing.table.DefaultTableCellRenderer)
BorderLayout(java.awt.BorderLayout)
VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel)
List(java.util.List)
ArrayList(java.util.ArrayList)
RuleAnalysisChanged(cbit.vcell.graph.ReactionCartoon.RuleAnalysisChanged)
JScrollPane(javax.swing.JScrollPane)
MouseEvent(java.awt.event.MouseEvent)
MolecularComponentPattern(org.vcell.model.rbm.MolecularComponentPattern)
GroupingCriteria(cbit.vcell.model.GroupingCriteria)
RbmObservable(cbit.vcell.model.RbmObservable)
JLabel(javax.swing.JLabel)
Dimension(java.awt.Dimension)
Point(java.awt.Point)
GridBagConstraints(java.awt.GridBagConstraints)
Point(java.awt.Point)
Graphics(java.awt.Graphics)
JTable(javax.swing.JTable)
DefaultScrollTableCellRenderer(org.vcell.util.gui.DefaultScrollTableCellRenderer)
EditorScrollTable(org.vcell.util.gui.EditorScrollTable)
JSplitPane(javax.swing.JSplitPane)
MolecularTypePattern(org.vcell.model.rbm.MolecularTypePattern)
Border(javax.swing.border.Border)
Example 3 with VCellSortTableModel
use of cbit.vcell.client.desktop.biomodel.VCellSortTableModel in project vcell by virtualcell.
the class InitialConditionsPanel method initialize.
/**
* Initialize the class.
*/
/* WARNING: THIS METHOD WILL BE REGENERATED. */
private void initialize() {
try {
// user code begin {1}
// user code end
setName("InitialConditionsPanel");
setLayout(new BorderLayout());
add(getRadioButtonAndCheckboxPanel(), BorderLayout.NORTH);
add(getScrollPaneTable().getEnclosingScrollPane(), BorderLayout.CENTER);
getScrollPaneTable().getSelectionModel().addListSelectionListener(ivjEventHandler);
getJMenuItemPaste().addActionListener(ivjEventHandler);
getJMenuItemCopy().addActionListener(ivjEventHandler);
getJMenuItemCopyAll().addActionListener(ivjEventHandler);
getJMenuItemPasteAll().addActionListener(ivjEventHandler);
getAmountRadioButton().addActionListener(ivjEventHandler);
getConcentrationRadioButton().addActionListener(ivjEventHandler);
getRandomizeInitCondnCheckbox().addActionListener(ivjEventHandler);
DefaultTableCellRenderer renderer = new DefaultScrollTableCellRenderer() {
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
setIcon(null);
defaultToolTipText = null;
if (value instanceof Species) {
setText(((Species) value).getCommonName());
defaultToolTipText = getText();
setToolTipText(defaultToolTipText);
} else if (value instanceof SpeciesContext) {
setText(((SpeciesContext) value).getName());
defaultToolTipText = getText();
setToolTipText(defaultToolTipText);
} else if (value instanceof Structure) {
setText(((Structure) value).getName());
defaultToolTipText = getText();
setToolTipText(defaultToolTipText);
} else if (value instanceof ScopedExpression) {
SpeciesContextSpec scSpec = tableModel.getValueAt(row);
VCUnitDefinition unit = null;
if (table.getColumnName(column).equals(SpeciesContextSpecsTableModel.ColumnType.COLUMN_INITIAL.label)) {
SpeciesContextSpecParameter initialConditionParameter = scSpec.getInitialConditionParameter();
unit = initialConditionParameter.getUnitDefinition();
} else if (table.getColumnName(column).equals(SpeciesContextSpecsTableModel.ColumnType.COLUMN_DIFFUSION.label)) {
SpeciesContextSpecParameter diffusionParameter = scSpec.getDiffusionParameter();
unit = diffusionParameter.getUnitDefinition();
}
if (unit != null) {
setHorizontalTextPosition(JLabel.LEFT);
setIcon(new TextIcon("[" + unit.getSymbolUnicode() + "]", DefaultScrollTableCellRenderer.uneditableForeground));
}
int rgb = 0x00ffffff & DefaultScrollTableCellRenderer.uneditableForeground.getRGB();
defaultToolTipText = "<html>" + StringEscapeUtils.escapeHtml4(getText()) + " <font color=#" + Integer.toHexString(rgb) + "> [" + unit.getSymbolUnicode() + "] </font></html>";
setToolTipText(defaultToolTipText);
if (unit != null) {
setText(defaultToolTipText);
}
}
TableModel tableModel = table.getModel();
if (tableModel instanceof SortTableModel) {
DefaultScrollTableCellRenderer.issueRenderer(this, defaultToolTipText, table, row, column, (SortTableModel) tableModel);
setHorizontalTextPosition(JLabel.TRAILING);
}
return this;
}
};
DefaultTableCellRenderer rbmSpeciesShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {
SpeciesPatternSmallShape spss = null;
@Override
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
if (table.getModel() instanceof VCellSortTableModel<?>) {
Object selectedObject = null;
if (table.getModel() == tableModel) {
selectedObject = tableModel.getValueAt(row);
}
if (selectedObject != null) {
if (selectedObject instanceof SpeciesContextSpec) {
SpeciesContextSpec scs = (SpeciesContextSpec) selectedObject;
SpeciesContext sc = scs.getSpeciesContext();
// sp may be null for "plain" species contexts
SpeciesPattern sp = sc.getSpeciesPattern();
Graphics panelContext = table.getGraphics();
spss = new SpeciesPatternSmallShape(4, 2, sp, shapeManager, panelContext, sc, isSelected, issueManager);
}
} else {
spss = null;
}
}
setText("");
return this;
}
@Override
public void paintComponent(Graphics g) {
super.paintComponent(g);
if (spss != null) {
spss.paintSelf(g);
}
}
};
DefaultScrollTableCellRenderer rulesTableCellRenderer = new DefaultScrollTableCellRenderer() {
final Color lightBlueBackground = new Color(214, 234, 248);
@Override
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
if (table.getModel() instanceof SpeciesContextSpecsTableModel) {
Icon icon = VCellIcons.issueGoodIcon;
Object selectedObject = null;
if (table.getModel() == tableModel) {
selectedObject = tableModel.getValueAt(row);
}
if (selectedObject != null) {
if (isSelected) {
setBackground(lightBlueBackground);
}
if (selectedObject instanceof SpeciesContextSpec) {
SpeciesContextSpec scs = (SpeciesContextSpec) selectedObject;
SpeciesContext sc = scs.getSpeciesContext();
boolean foundRuleMatch = false;
if (fieldSimulationContext.getRateRules() != null && fieldSimulationContext.getRateRules().length > 0) {
for (RateRule rr : fieldSimulationContext.getRateRules()) {
if (rr.getRateRuleVar() == null) {
continue;
}
if (sc.getName().equals(rr.getRateRuleVar().getName())) {
foundRuleMatch = true;
icon = VCellIcons.ruleRateIcon;
break;
}
}
}
if (!foundRuleMatch && fieldSimulationContext.getAssignmentRules() != null && fieldSimulationContext.getAssignmentRules().length > 0) {
for (AssignmentRule rr : fieldSimulationContext.getAssignmentRules()) {
if (rr.getAssignmentRuleVar() == null) {
continue;
}
if (sc.getName().equals(rr.getAssignmentRuleVar().getName())) {
icon = VCellIcons.ruleAssignIcon;
break;
}
}
}
}
}
setIcon(icon);
}
return this;
}
};
getScrollPaneTable().setDefaultRenderer(SpeciesContext.class, renderer);
getScrollPaneTable().setDefaultRenderer(Structure.class, renderer);
// depiction icons
getScrollPaneTable().setDefaultRenderer(SpeciesPattern.class, rbmSpeciesShapeDepictionCellRenderer);
getScrollPaneTable().setDefaultRenderer(Species.class, renderer);
getScrollPaneTable().setDefaultRenderer(ScopedExpression.class, renderer);
getScrollPaneTable().setDefaultRenderer(Boolean.class, new ScrollTableBooleanCellRenderer());
// rules icons
getScrollPaneTable().setDefaultRenderer(SpeciesContextSpecsTableModel.RulesProvenance.class, rulesTableCellRenderer);
// TODO: find out why the code below is not working properly
// int ordinal = SpeciesContextSpecsTableModel.ColumnType.COLUMN_RULES.ordinal();
// getScrollPaneTable().getColumnModel().getColumn(ordinal).setCellRenderer(rulesTableCellRenderer);
// final int rulesWidth = 50; // fixed max size, there's no point to enlarge some columns
// int index = SpeciesContextSpecsTableModel.ColumnType.COLUMN_RULES.ordinal();
// getScrollPaneTable().getColumnModel().getColumn(index).setPreferredWidth(rulesWidth);
// getScrollPaneTable().getColumnModel().getColumn(index).setMaxWidth(rulesWidth);
} catch (java.lang.Throwable ivjExc) {
handleException(ivjExc);
}
}
Also used :
VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel)
SortTableModel(org.vcell.util.gui.sorttable.SortTableModel)
SpeciesPatternSmallShape(cbit.vcell.graph.SpeciesPatternSmallShape)
SpeciesContext(cbit.vcell.model.SpeciesContext)
SpeciesContextSpec(cbit.vcell.mapping.SpeciesContextSpec)
SpeciesPattern(org.vcell.model.rbm.SpeciesPattern)
DefaultTableCellRenderer(javax.swing.table.DefaultTableCellRenderer)
BorderLayout(java.awt.BorderLayout)
VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel)
RateRule(cbit.vcell.mapping.RateRule)
Structure(cbit.vcell.model.Structure)
Species(cbit.vcell.model.Species)
SpeciesContextSpecParameter(cbit.vcell.mapping.SpeciesContextSpec.SpeciesContextSpecParameter)
TextIcon(cbit.vcell.mapping.gui.StructureMappingTableRenderer.TextIcon)
AssignmentRule(cbit.vcell.mapping.AssignmentRule)
Color(java.awt.Color)
ScrollTableBooleanCellRenderer(org.vcell.util.gui.ScrollTable.ScrollTableBooleanCellRenderer)
Graphics(java.awt.Graphics)
VCUnitDefinition(cbit.vcell.units.VCUnitDefinition)
ScopedExpression(cbit.gui.ScopedExpression)
JTable(javax.swing.JTable)
DefaultScrollTableCellRenderer(org.vcell.util.gui.DefaultScrollTableCellRenderer)
Icon(javax.swing.Icon)
TextIcon(cbit.vcell.mapping.gui.StructureMappingTableRenderer.TextIcon)
TableModel(javax.swing.table.TableModel)
VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel)
SortTableModel(org.vcell.util.gui.sorttable.SortTableModel)
Example 4 with VCellSortTableModel
use of cbit.vcell.client.desktop.biomodel.VCellSortTableModel in project vcell by virtualcell.
the class ModelProcessSpecsPanel method initConnections.
/**
* Initializes connections
* @exception java.lang.Exception The exception description.
*/
/* WARNING: THIS METHOD WILL BE REGENERATED. */
private void initConnections() throws java.lang.Exception {
// user code begin {1}
// user code end
this.addPropertyChangeListener(ivjEventHandler);
getScrollPaneTable().setModel(getModelProcessSpecsTableModel());
getScrollPaneTable().setDefaultRenderer(ModelProcess.class, new DefaultScrollTableCellRenderer() {
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
defaultToolTipText = null;
if (value instanceof ModelProcess) {
setText(((ModelProcess) value).getName());
defaultToolTipText = getText();
setToolTipText(defaultToolTipText);
}
TableModel tableModel = table.getModel();
if (tableModel instanceof SortTableModel) {
DefaultScrollTableCellRenderer.issueRenderer(this, defaultToolTipText, table, row, column, (SortTableModel) tableModel);
}
return this;
}
});
DefaultScrollTableCellRenderer rbmReactionShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {
List<SpeciesPatternSmallShape> spssList = new ArrayList<SpeciesPatternSmallShape>();
SpeciesPatternSmallShape spss = null;
@Override
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
if (table.getModel() instanceof VCellSortTableModel<?>) {
Object selectedObject = null;
if (table.getModel() == ivjModelProcessSpecsTableModel) {
selectedObject = ivjModelProcessSpecsTableModel.getValueAt(row);
}
if (selectedObject != null) {
if (selectedObject instanceof ModelProcessSpec) {
ModelProcessSpec mps = (ModelProcessSpec) selectedObject;
ModelProcess mp = (ModelProcess) mps.getModelProcess();
if (mp instanceof ReactionRule) {
ReactionRule rr = (ReactionRule) mp;
Graphics panelContext = table.getGraphics();
spssList.clear();
List<ReactantPattern> rpList = rr.getReactantPatterns();
int xPos = 4;
for (int i = 0; i < rpList.size(); i++) {
SpeciesPattern sp = rr.getReactantPattern(i).getSpeciesPattern();
spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rr, isSelected, issueManager);
if (i < rpList.size() - 1) {
spss.addEndText("+");
} else {
if (rr.isReversible()) {
spss.addEndText("<->");
xPos += 7;
} else {
spss.addEndText("->");
}
}
xPos += spss.getWidth() + 15;
spssList.add(spss);
}
List<ProductPattern> ppList = rr.getProductPatterns();
xPos += 7;
for (int i = 0; i < ppList.size(); i++) {
SpeciesPattern sp = rr.getProductPattern(i).getSpeciesPattern();
spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rr, isSelected, issueManager);
if (i < ppList.size() - 1) {
spss.addEndText("+");
}
xPos += spss.getWidth() + 15;
spssList.add(spss);
}
} else {
ReactionStep rs = (ReactionStep) mp;
Graphics panelContext = table.getGraphics();
spssList.clear();
int xPos = 4;
int extraSpace = 0;
for (int i = 0; i < rs.getNumReactants(); i++) {
SpeciesPattern sp = rs.getReactant(i).getSpeciesContext().getSpeciesPattern();
spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rs, isSelected, issueManager);
if (i < rs.getNumReactants() - 1) {
spss.addEndText("+");
} else {
if (rs.isReversible()) {
spss.addEndText("<->");
extraSpace += 7;
} else {
spss.addEndText("->");
}
}
int offset = sp == null ? 17 : 15;
offset += extraSpace;
int w = spss.getWidth();
xPos += w + offset;
spssList.add(spss);
}
xPos += 8;
for (int i = 0; i < rs.getNumProducts(); i++) {
SpeciesPattern sp = rs.getProduct(i).getSpeciesContext().getSpeciesPattern();
if (i == 0 && rs.getNumReactants() == 0) {
xPos += 14;
}
spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rs, isSelected, issueManager);
if (i == 0 && rs.getNumReactants() == 0) {
spss.addStartText("->");
}
if (i < rs.getNumProducts() - 1) {
spss.addEndText("+");
}
int offset = sp == null ? 17 : 15;
int w = spss.getWidth();
xPos += w + offset;
spssList.add(spss);
}
}
}
} else {
spssList.clear();
}
}
setText("");
return this;
}
@Override
public void paintComponent(Graphics g) {
super.paintComponent(g);
for (SpeciesPatternSmallShape spss : spssList) {
if (spss == null) {
continue;
}
spss.paintSelf(g);
}
}
};
getScrollPaneTable().setDefaultRenderer(SpeciesPattern.class, rbmReactionShapeDepictionCellRenderer);
// ivjScrollPaneTable.getColumnModel().getColumn(ModelProcessSpecsTableModel.ColumnType.COLUMN_DEPICTION.ordinal()).setCellRenderer(rbmReactionShapeDepictionCellRenderer);
// ivjScrollPaneTable.getColumnModel().getColumn(ModelProcessSpecsTableModel.ColumnType.COLUMN_DEPICTION.ordinal()).setPreferredWidth(180);
getScrollPaneTable().getSelectionModel().addListSelectionListener(ivjEventHandler);
}
Also used :
VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel)
SortTableModel(org.vcell.util.gui.sorttable.SortTableModel)
ReactionRule(cbit.vcell.model.ReactionRule)
ProductPattern(cbit.vcell.model.ProductPattern)
SpeciesPatternSmallShape(cbit.vcell.graph.SpeciesPatternSmallShape)
ModelProcessSpec(cbit.vcell.mapping.ModelProcessSpec)
ModelProcess(cbit.vcell.model.ModelProcess)
SpeciesPattern(org.vcell.model.rbm.SpeciesPattern)
Graphics(java.awt.Graphics)
VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel)
JTable(javax.swing.JTable)
ReactionStep(cbit.vcell.model.ReactionStep)
DefaultScrollTableCellRenderer(org.vcell.util.gui.DefaultScrollTableCellRenderer)
ArrayList(java.util.ArrayList)
List(java.util.List)
Component(java.awt.Component)
VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel)
TableModel(javax.swing.table.TableModel)
SortTableModel(org.vcell.util.gui.sorttable.SortTableModel)
ReactantPattern(cbit.vcell.model.ReactantPattern)
Example 5 with VCellSortTableModel
use of cbit.vcell.client.desktop.biomodel.VCellSortTableModel in project vcell by virtualcell.
the class DialogUtils method showComponentOptionsTableList.
public static TableListResult showComponentOptionsTableList(final Component requester, final String title, final String[] columnNames, final Object[][] rowDataOrig, final Integer listSelectionModel_SelectMode, final ListSelectionListener listSelectionListener, final String[] options, final String initOption, final Comparator<Object> rowSortComparator, final boolean bModal) throws UserCancelException {
// //Create hidden column with original row index so original row index can
// //be returned for user selections even if rows are sorted
// final int hiddenColumnIndex = rowDataOrig[0].length;
// final Object[][] rowDataHiddenIndex = new Object[rowDataOrig.length][hiddenColumnIndex+1];
// for (int i = 0; i < rowDataHiddenIndex.length; i++) {
// for (int j = 0; j < rowDataOrig[i].length; j++) {
// rowDataHiddenIndex[i][j] = rowDataOrig[i][j];
// }
// rowDataHiddenIndex[i][hiddenColumnIndex] = i;
// }
Producer<TableListResult> prod = () -> {
// Create hidden column with original row index so original row index can
// be returned for user selections even if rows are sorted
int hiddenColumnIndex = rowDataOrig[0].length;
Object[][] rowDataHiddenIndex = rowDataOrig;
if (rowSortComparator != null) {
rowDataHiddenIndex = new Object[rowDataOrig.length][hiddenColumnIndex + 1];
for (int i = 0; i < rowDataHiddenIndex.length; i++) {
for (int j = 0; j < rowDataOrig[i].length; j++) {
rowDataHiddenIndex[i][j] = rowDataOrig[i][j];
}
rowDataHiddenIndex[i][hiddenColumnIndex] = i;
}
}
@SuppressWarnings("serial") VCellSortTableModel<Object[]> tableModel = new VCellSortTableModel<Object[]>(columnNames, rowDataOrig.length) {
@Override
public boolean isSortable(int col) {
if (rowSortComparator != null) {
return true;
}
return false;
}
public Object getValueAt(int row, int column) {
return getValueAt(row)[column];
}
@Override
public Comparator<Object[]> getComparator(final int col, final boolean ascending) {
return new Comparator<Object[]>() {
public int compare(Object[] o1, Object[] o2) {
if (ascending) {
return rowSortComparator.compare(o1[col], o2[col]);
}
return rowSortComparator.compare(o2[col], o1[col]);
}
};
}
};
final JSortTable table = new JSortTable();
// table.setAutoResizeMode(JTable.AUTO_RESIZE_ALL_COLUMNS);
table.setModel(tableModel);
tableModel.setData(Arrays.asList(rowDataHiddenIndex));
if (listSelectionModel_SelectMode != null) {
table.setSelectionMode(listSelectionModel_SelectMode);
} else {
table.setRowSelectionAllowed(false);
table.setColumnSelectionAllowed(false);
}
table.setPreferredScrollableViewportSize(new Dimension(500, 250));
table.disableUneditableForeground();
OKEnabler tableListOKEnabler = null;
if (listSelectionModel_SelectMode != null) {
tableListOKEnabler = new OKEnabler() {
private JOptionPane jop;
public void setJOptionPane(JOptionPane joptionPane) {
jop = joptionPane;
setInternalNotCancelEnabled(joptionPane, false, false);
table.getSelectionModel().addListSelectionListener(new ListSelectionListener() {
public void valueChanged(ListSelectionEvent e) {
if (!e.getValueIsAdjusting()) {
if (table.getSelectedRowCount() != 0) {
setInternalNotCancelEnabled(jop, true, false);
} else {
setInternalNotCancelEnabled(jop, false, false);
}
}
}
});
}
};
}
if (listSelectionListener != null) {
table.getSelectionModel().addListSelectionListener(listSelectionListener);
}
TableListResult tableListResult = new TableListResult();
// HACK to fix horizontal scrollbar not showing for large horizontal tables
// workaround code from: http://bugs.sun.com/view_bug.do?bug_id=4127936
final JScrollPane[] jScrollPaneArr = new JScrollPane[1];
Component[] components = table.getEnclosingScrollPane().getComponents();
for (int i = 0; i < components.length; i++) {
if (components[i] instanceof JScrollPane) {
jScrollPaneArr[0] = (JScrollPane) components[i];
break;
}
}
if (jScrollPaneArr[0] != null) {
jScrollPaneArr[0].addComponentListener(new ComponentAdapter() {
@Override
public void componentResized(ComponentEvent e) {
super.componentResized(e);
if (table.getPreferredSize().width <= jScrollPaneArr[0].getViewport().getExtentSize().width) {
table.setAutoResizeMode(JTable.AUTO_RESIZE_ALL_COLUMNS);
} else {
table.setAutoResizeMode(JTable.AUTO_RESIZE_OFF);
}
}
});
}
if (options == null) {
if (bModal) {
if (showComponentOKCancelDialog(requester, table.getEnclosingScrollPane(), title, tableListOKEnabler) != JOptionPane.OK_OPTION) {
throw UserCancelException.CANCEL_GENERIC;
}
} else {
// display non-modal
JOptionPane jOptionPane = new JOptionPane(table.getEnclosingScrollPane(), JOptionPane.INFORMATION_MESSAGE);
JDialog jDialog = jOptionPane.createDialog(requester, title);
jDialog.setResizable(true);
jDialog.setModal(false);
jDialog.pack();
jDialog.setDefaultCloseOperation(JDialog.DISPOSE_ON_CLOSE);
jDialog.setVisible(true);
}
tableListResult.selectedTableRows = table.getSelectedRows();
} else {
tableListResult.selectedOption = showOptionsDialog(requester, table.getEnclosingScrollPane(), JOptionPane.QUESTION_MESSAGE, options, initOption, tableListOKEnabler, title);
tableListResult.selectedTableRows = table.getSelectedRows();
}
if (rowSortComparator != null) {
// return the index of the original unsorted object array that corresponds to the user row selections
for (int i = 0; i < tableListResult.selectedTableRows.length; i++) {
tableListResult.selectedTableRows[i] = (Integer) (tableModel.getValueAt(tableListResult.selectedTableRows[i])[hiddenColumnIndex]);
}
}
return tableListResult;
};
return VCSwingFunction.executeAsRuntimeException(prod);
}
Also used :
JScrollPane(javax.swing.JScrollPane)
ListSelectionEvent(javax.swing.event.ListSelectionEvent)
Dimension(java.awt.Dimension)
JOptionPane(javax.swing.JOptionPane)
Comparator(java.util.Comparator)
ListSelectionListener(javax.swing.event.ListSelectionListener)
JSortTable(org.vcell.util.gui.sorttable.JSortTable)
VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel)
ComponentEvent(java.awt.event.ComponentEvent)
ComponentAdapter(java.awt.event.ComponentAdapter)
JDialog(javax.swing.JDialog)
Aggregations
VCellSortTableModel (cbit.vcell.client.desktop.biomodel.VCellSortTableModel)11
Dimension (java.awt.Dimension)8
JTable (javax.swing.JTable)8
DefaultScrollTableCellRenderer (org.vcell.util.gui.DefaultScrollTableCellRenderer)7
SpeciesPatternSmallShape (cbit.vcell.graph.SpeciesPatternSmallShape)6
Graphics (java.awt.Graphics)6
Point (java.awt.Point)6
MouseEvent (java.awt.event.MouseEvent)6
JLabel (javax.swing.JLabel)6
JScrollPane (javax.swing.JScrollPane)6
DefaultTableCellRenderer (javax.swing.table.DefaultTableCellRenderer)6
SpeciesPattern (org.vcell.model.rbm.SpeciesPattern)6
BorderLayout (java.awt.BorderLayout)5
GridBagConstraints (java.awt.GridBagConstraints)5
GridBagLayout (java.awt.GridBagLayout)5
Insets (java.awt.Insets)5
JPanel (javax.swing.JPanel)5
JTextField (javax.swing.JTextField)5
Border (javax.swing.border.Border)5
EditorScrollTable (org.vcell.util.gui.EditorScrollTable)5
