Examples with DefaultScrollTableCellRenderer org.vcell.util.gui.DefaultScrollTableCellRenderer used on opensource projects

Example 1 with DefaultScrollTableCellRenderer

use of org.vcell.util.gui.DefaultScrollTableCellRenderer in project vcell by virtualcell.

the class ViewObservablesMapPanel method initialize.

private void initialize() {
    try {
        // --------------------------------------- the split panels
        setName("ViewGeneratedSpeciesPanel");
        setLayout(new BorderLayout());
        JPanel topPanel = new JPanel();
        topPanel.setLayout(new GridBagLayout());
        JPanel bottomPanel = new JPanel();
        bottomPanel.setLayout(new GridBagLayout());
        JSplitPane splitPaneHorizontal = new JSplitPane(JSplitPane.VERTICAL_SPLIT);
        splitPaneHorizontal.setDividerSize(10);
        splitPaneHorizontal.setOneTouchExpandable(true);
        splitPaneHorizontal.setDividerLocation(260);
        splitPaneHorizontal.setResizeWeight(0.5);
        splitPaneHorizontal.setTopComponent(topPanel);
        splitPaneHorizontal.setBottomComponent(bottomPanel);
        add(splitPaneHorizontal, BorderLayout.CENTER);
        // ---------------------------------------- species shape panel
        shapePanelSpecies = new LargeShapePanel() {

            @Override
            public void paintComponent(Graphics g) {
                super.paintComponent(g);
                if (spls != null) {
                    spls.paintSelf(g);
                }
            }

            @Override
            public DisplayMode getDisplayMode() {
                return DisplayMode.other;
            }

            @Override
            public RuleAnalysisChanged hasStateChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
                return RuleAnalysisChanged.UNCHANGED;
            }

            @Override
            public RuleAnalysisChanged hasStateChanged(MolecularComponentPattern molecularComponentPattern) {
                return RuleAnalysisChanged.UNCHANGED;
            }

            @Override
            public RuleAnalysisChanged hasBondChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
                return RuleAnalysisChanged.UNCHANGED;
            }

            @Override
            public RuleAnalysisChanged hasBondChanged(MolecularComponentPattern molecularComponentPattern) {
                return RuleAnalysisChanged.UNCHANGED;
            }

            @Override
            public RuleAnalysisChanged hasNoMatch(String reactionRuleName, MolecularTypePattern mtp) {
                return RuleAnalysisChanged.UNCHANGED;
            }

            @Override
            public RuleAnalysisChanged hasNoMatch(MolecularTypePattern molecularTypePattern) {
                return RuleAnalysisChanged.UNCHANGED;
            }

            @Override
            public RuleParticipantSignature getSignature() {
                return null;
            }

            @Override
            public GroupingCriteria getCriteria() {
                return null;
            }

            @Override
            public boolean isViewSingleRow() {
                return true;
            }
        };
        shapePanelSpecies.setLayout(new GridBagLayout());
        shapePanelSpecies.setBackground(Color.white);
        // not really editable but we don't want the brown contours here
        shapePanelSpecies.setEditable(true);
        shapePanelSpecies.setShowMoleculeColor(true);
        shapePanelSpecies.setShowNonTrivialOnly(true);
        Border loweredBevelBorder = BorderFactory.createLoweredBevelBorder();
        JScrollPane scrollPaneSpecies = new JScrollPane(shapePanelSpecies);
        scrollPaneSpecies.setBorder(loweredBevelBorder);
        scrollPaneSpecies.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
        scrollPaneSpecies.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_NEVER);
        JPanel optionsPanelSpecies = new JPanel();
        optionsPanelSpecies.setLayout(new GridBagLayout());
        getZoomSmallerButtonSpecies().setEnabled(true);
        getZoomLargerButtonSpecies().setEnabled(true);
        shapePanelSpecies.zoomSmaller();
        shapePanelSpecies.zoomSmaller();
        GridBagConstraints gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 0;
        gbc.insets = new Insets(0, 0, 0, 10);
        gbc.anchor = GridBagConstraints.WEST;
        optionsPanelSpecies.add(getZoomLargerButtonSpecies(), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 1;
        gbc.insets = new Insets(2, 0, 4, 10);
        gbc.anchor = GridBagConstraints.WEST;
        optionsPanelSpecies.add(getZoomSmallerButtonSpecies(), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 2;
        gbc.weightx = 1;
        // fake cell used for filling all the vertical empty space
        gbc.weighty = 1;
        gbc.anchor = GridBagConstraints.WEST;
        gbc.insets = new Insets(4, 4, 4, 10);
        optionsPanelSpecies.add(new JLabel(""), gbc);
        JPanel containerOfScrollPanelSpecies = new JPanel();
        containerOfScrollPanelSpecies.setLayout(new BorderLayout());
        containerOfScrollPanelSpecies.add(optionsPanelSpecies, BorderLayout.WEST);
        containerOfScrollPanelSpecies.add(scrollPaneSpecies, BorderLayout.CENTER);
        Dimension dimS = new Dimension(500, 125);
        // dimension of shape panel
        containerOfScrollPanelSpecies.setPreferredSize(dimS);
        containerOfScrollPanelSpecies.setMinimumSize(dimS);
        containerOfScrollPanelSpecies.setMaximumSize(dimS);
        shapePanelObservable = new LargeShapePanel() {

            @Override
            public void paintComponent(Graphics g) {
                super.paintComponent(g);
                for (SpeciesPatternLargeShape sps : spsList) {
                    if (sps == null) {
                        continue;
                    }
                    sps.paintSelf(g);
                }
            }

            @Override
            public DisplayMode getDisplayMode() {
                return DisplayMode.other;
            }

            @Override
            public RuleAnalysisChanged hasStateChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
                return RuleAnalysisChanged.UNCHANGED;
            }

            @Override
            public RuleAnalysisChanged hasStateChanged(MolecularComponentPattern molecularComponentPattern) {
                return RuleAnalysisChanged.UNCHANGED;
            }

            @Override
            public RuleAnalysisChanged hasBondChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
                return RuleAnalysisChanged.UNCHANGED;
            }

            @Override
            public RuleAnalysisChanged hasBondChanged(MolecularComponentPattern molecularComponentPattern) {
                return RuleAnalysisChanged.UNCHANGED;
            }

            @Override
            public RuleAnalysisChanged hasNoMatch(String reactionRuleName, MolecularTypePattern mtp) {
                return RuleAnalysisChanged.UNCHANGED;
            }

            @Override
            public RuleAnalysisChanged hasNoMatch(MolecularTypePattern molecularTypePattern) {
                return RuleAnalysisChanged.UNCHANGED;
            }

            @Override
            public RuleParticipantSignature getSignature() {
                return null;
            }

            @Override
            public GroupingCriteria getCriteria() {
                return null;
            }

            @Override
            public boolean isViewSingleRow() {
                return true;
            }
        };
        // 
        DefaultScrollTableCellRenderer rbmSpeciesPatternCellRenderer = new DefaultScrollTableCellRenderer() {

            @Override
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                if (table.getModel() instanceof GeneratedSpeciesTableModel2) {
                    Object selectedObject = null;
                    if (table.getModel() == speciesTableModel) {
                        selectedObject = speciesTableModel.getValueAt(row);
                    }
                    if (selectedObject != null) {
                        if (selectedObject instanceof GeneratedSpeciesTableRow && value instanceof String) {
                            SpeciesPattern sp = ((GeneratedSpeciesTableRow) selectedObject).getSpecies().getSpeciesPattern();
                            String text = "<html>";
                            text += RbmTableRenderer.toHtml(sp, isSelected);
                            text += "</html>";
                            setText(text);
                        }
                    }
                }
                return this;
            }
        };
        // shapePanelObservable.setLayout(null);
        shapePanelObservable.setLayout(new GridBagLayout());
        shapePanelObservable.setBackground(Color.white);
        shapePanelObservable.setEditable(true);
        shapePanelObservable.setShowMoleculeColor(true);
        shapePanelObservable.setShowNonTrivialOnly(true);
        JScrollPane scrollPaneObservable = new JScrollPane(shapePanelObservable);
        scrollPaneObservable.setBorder(loweredBevelBorder);
        scrollPaneObservable.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
        scrollPaneObservable.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_NEVER);
        JPanel optionsPanelObservable = new JPanel();
        optionsPanelObservable.setLayout(new GridBagLayout());
        getZoomSmallerButtonObservable().setEnabled(true);
        getZoomLargerButtonObservable().setEnabled(true);
        shapePanelObservable.zoomSmaller();
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 0;
        gbc.insets = new Insets(0, 0, 0, 10);
        gbc.anchor = GridBagConstraints.WEST;
        optionsPanelObservable.add(getZoomLargerButtonObservable(), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 1;
        gbc.insets = new Insets(2, 0, 4, 10);
        gbc.anchor = GridBagConstraints.WEST;
        optionsPanelObservable.add(getZoomSmallerButtonObservable(), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 2;
        gbc.weightx = 1;
        // fake cell used for filling all the vertical empty space
        gbc.weighty = 1;
        gbc.anchor = GridBagConstraints.WEST;
        gbc.insets = new Insets(4, 4, 4, 10);
        optionsPanelObservable.add(new JLabel(""), gbc);
        JPanel containerOfScrollPanelObservable = new JPanel();
        containerOfScrollPanelObservable.setLayout(new BorderLayout());
        containerOfScrollPanelObservable.add(optionsPanelObservable, BorderLayout.WEST);
        containerOfScrollPanelObservable.add(scrollPaneObservable, BorderLayout.CENTER);
        Dimension dimO = new Dimension(500, 100);
        // dimension of shape panel
        containerOfScrollPanelObservable.setPreferredSize(dimO);
        containerOfScrollPanelObservable.setMinimumSize(dimO);
        containerOfScrollPanelObservable.setMaximumSize(dimO);
        // -------------- connection between tables, table models, selection models, renderers, event handlers
        speciesTable = new EditorScrollTable();
        speciesTableModel = new GeneratedSpeciesTableModel2(speciesTable, owner);
        speciesTable.setModel(speciesTableModel);
        speciesTable.getSelectionModel().addListSelectionListener(eventHandlerS);
        speciesTable.getModel().addTableModelListener(eventHandlerS);
        observablesTable = new EditorScrollTable();
        observablesTableModel = new ObservablesGroupTableModel(observablesTable, owner, speciesTableModel);
        observablesTable.setModel(observablesTableModel);
        observablesTable.getSelectionModel().addListSelectionListener(eventHandlerO);
        observablesTable.getModel().addTableModelListener(eventHandlerO);
        speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColDefinition).setCellRenderer(rbmSpeciesPatternCellRenderer);
        DefaultTableCellRenderer rightRenderer = new DefaultTableCellRenderer();
        rightRenderer.setHorizontalAlignment(JLabel.RIGHT);
        // speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColMultiplier).setCellRenderer(rightRenderer);	// right align
        // left column wide enough for title
        speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColMultiplier).setMaxWidth(70);
        speciesTable.addMouseMotionListener(new // add toolTipText for each table cell
        MouseMotionAdapter() {

            public void mouseMoved(MouseEvent e) {
                Point p = e.getPoint();
                int row = speciesTable.rowAtPoint(p);
                int column = speciesTable.columnAtPoint(p);
                speciesTable.setToolTipText(String.valueOf(speciesTable.getValueAt(row, column)));
            }
        });
        // ---------------------------------------------- top panel
        int gridy = 0;
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        gbc.weightx = 1.0;
        gbc.weighty = 1.0;
        gbc.gridwidth = 8;
        gbc.fill = GridBagConstraints.BOTH;
        gbc.insets = new Insets(4, 4, 4, 4);
        observablesTable.setPreferredScrollableViewportSize(new Dimension(400, 200));
        topPanel.add(observablesTable.getEnclosingScrollPane(), gbc);
        gridy++;
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        gbc.anchor = GridBagConstraints.LINE_END;
        gbc.insets = new Insets(4, 4, 4, 4);
        topPanel.add(new JLabel("Search "), gbc);
        textFieldSearchObservables = new JTextField(70);
        textFieldSearchObservables.addActionListener(eventHandlerO);
        textFieldSearchObservables.getDocument().addDocumentListener(eventHandlerO);
        textFieldSearchObservables.putClientProperty("JTextField.variant", "search");
        gbc = new java.awt.GridBagConstraints();
        gbc.weightx = 1.0;
        gbc.gridx = 1;
        gbc.gridy = gridy;
        gbc.gridwidth = 3;
        gbc.anchor = GridBagConstraints.LINE_START;
        gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(4, 0, 4, 4);
        topPanel.add(textFieldSearchObservables, gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 4;
        gbc.gridy = gridy;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(4, 4, 4, 10);
        topPanel.add(totalObservablesLabel, gbc);
        gridy++;
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        // gbc.weightx = 1.0;
        gbc.gridwidth = 8;
        gbc.anchor = GridBagConstraints.LINE_END;
        gbc.fill = java.awt.GridBagConstraints.BOTH;
        gbc.insets = new Insets(4, 4, 4, 4);
        topPanel.add(containerOfScrollPanelObservable, gbc);
        // -------------------------------------------- bottom panel
        gridy = 0;
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        gbc.weightx = 1.0;
        gbc.weighty = 1.0;
        gbc.gridwidth = 8;
        gbc.fill = GridBagConstraints.BOTH;
        gbc.insets = new Insets(4, 4, 4, 4);
        speciesTable.setPreferredScrollableViewportSize(new Dimension(400, 200));
        bottomPanel.add(speciesTable.getEnclosingScrollPane(), gbc);
        gridy++;
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        gbc.anchor = GridBagConstraints.LINE_END;
        gbc.insets = new Insets(4, 4, 4, 4);
        bottomPanel.add(new JLabel("Search "), gbc);
        textFieldSearchSpecies = new JTextField(70);
        textFieldSearchSpecies.addActionListener(eventHandlerS);
        textFieldSearchSpecies.getDocument().addDocumentListener(eventHandlerS);
        textFieldSearchSpecies.putClientProperty("JTextField.variant", "search");
        gbc = new java.awt.GridBagConstraints();
        gbc.weightx = 1.0;
        gbc.gridx = 1;
        gbc.gridy = gridy;
        gbc.gridwidth = 3;
        gbc.anchor = GridBagConstraints.LINE_START;
        gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(4, 0, 4, 4);
        bottomPanel.add(textFieldSearchSpecies, gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 4;
        gbc.gridy = gridy;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(4, 4, 4, 10);
        bottomPanel.add(totalSpeciesLabel, gbc);
        gridy++;
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        // gbc.weightx = 1.0;
        gbc.gridwidth = 8;
        gbc.anchor = GridBagConstraints.LINE_END;
        gbc.fill = java.awt.GridBagConstraints.BOTH;
        gbc.insets = new Insets(4, 4, 4, 4);
        bottomPanel.add(containerOfScrollPanelSpecies, gbc);
        // rendering the small shapes of the flattened species in the Depiction column of this viewer table)
        // TODO: this renderer is almost identical with the one in BioModelEditorModelPanel (which paints the small shapes
        // of a species context in the Depiction column of the species table)
        DefaultScrollTableCellRenderer rbmSpeciesShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {

            SpeciesPatternSmallShape spss = null;

            @Override
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                if (table.getModel() instanceof VCellSortTableModel<?>) {
                    Object selectedObject = null;
                    if (table.getModel() == speciesTableModel) {
                        selectedObject = speciesTableModel.getValueAt(row);
                    }
                    if (selectedObject != null) {
                        if (selectedObject instanceof GeneratedSpeciesTableRow) {
                            SpeciesContext sc = ((GeneratedSpeciesTableRow) selectedObject).getSpecies();
                            // sp cannot be null
                            SpeciesPattern sp = sc.getSpeciesPattern();
                            Graphics panelContext = table.getGraphics();
                            spss = new SpeciesPatternSmallShape(4, 2, sp, panelContext, sc, isSelected, issueManager);
                        }
                    } else {
                        spss = null;
                    }
                }
                setText("");
                return this;
            }

            @Override
            public void paintComponent(Graphics g) {
                super.paintComponent(g);
                if (spss != null) {
                    spss.paintSelf(g);
                }
            }
        };
        speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColDepiction).setCellRenderer(rbmSpeciesShapeDepictionCellRenderer);
        speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColDepiction).setPreferredWidth(400);
        speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColDepiction).setMinWidth(400);
        speciesTable.getColumnModel().getColumn(GeneratedSpeciesTableModel2.iColDefinition).setPreferredWidth(30);
        speciesTable.setAutoResizeMode(JTable.AUTO_RESIZE_LAST_COLUMN);
        DefaultScrollTableCellRenderer rbmObservableShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {

            List<SpeciesPatternSmallShape> spssList = new ArrayList<SpeciesPatternSmallShape>();

            SpeciesPatternSmallShape spss = null;

            @Override
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                if (table.getModel() instanceof VCellSortTableModel<?>) {
                    Object selectedObject = null;
                    if (table.getModel() == observablesTableModel) {
                        selectedObject = observablesTableModel.getValueAt(row);
                    }
                    if (selectedObject != null && selectedObject instanceof ObservablesGroupTableRow) {
                        ObservablesGroupTableRow ogtr = ((ObservablesGroupTableRow) selectedObject);
                        String obsName = ogtr.getObservableGroupObject().getObservableGroupName();
                        RbmObservable observable = ogtr.getObservable(obsName);
                        Graphics panelContext = table.getGraphics();
                        int xPos = 4;
                        spssList.clear();
                        for (int i = 0; i < observable.getSpeciesPatternList().size(); i++) {
                            SpeciesPattern sp = observable.getSpeciesPatternList().get(i);
                            spss = new SpeciesPatternSmallShape(xPos, 2, sp, panelContext, observable, isSelected, issueManager);
                            xPos += spss.getWidth() + 6;
                            spssList.add(spss);
                        }
                    } else {
                        spssList.clear();
                    }
                }
                setText("");
                return this;
            }

            @Override
            public void paintComponent(Graphics g) {
                super.paintComponent(g);
                for (SpeciesPatternSmallShape spss : spssList) {
                    if (spss == null) {
                        continue;
                    }
                    spss.paintSelf(g);
                }
            }
        };
        observablesTable.getColumnModel().getColumn(ObservablesGroupTableModel.iColDepiction).setCellRenderer(rbmObservableShapeDepictionCellRenderer);
        observablesTable.getColumnModel().getColumn(ObservablesGroupTableModel.iColDepiction).setPreferredWidth(150);
        observablesTable.getColumnModel().getColumn(ObservablesGroupTableModel.iColDepiction).setMinWidth(150);
        observablesTable.getColumnModel().getColumn(ObservablesGroupTableModel.iColDefinition).setPreferredWidth(80);
        observablesTable.getColumnModel().getColumn(ObservablesGroupTableModel.iColExpression).setPreferredWidth(100);
        observablesTable.setAutoResizeMode(JTable.AUTO_RESIZE_LAST_COLUMN);
    } catch (java.lang.Throwable ivjExc) {
        handleException(ivjExc);
    }
}

Example 2 with DefaultScrollTableCellRenderer

use of org.vcell.util.gui.DefaultScrollTableCellRenderer in project vcell by virtualcell.

the class ParameterMappingPanel method initialize.

/**
 * Initialize the class.
 */
private void initialize() {
    try {
        setName("ModelParameterPanel");
        setLayout(new java.awt.BorderLayout());
        setSize(655, 226);
        addButton = new JButton(VCellIcons.addIcon);
        deleteButton = new JButton(VCellIcons.deleteIcon);
        deleteButton.setEnabled(false);
        JToolBar toolBar = new JToolBar();
        toolBar.setFloatable(false);
        toolBar.add(addButton);
        toolBar.add(deleteButton);
        add(getScrollPaneTable().getEnclosingScrollPane(), BorderLayout.CENTER);
        add(toolBar, BorderLayout.NORTH);
        addButton.addActionListener(ivjEventHandler);
        deleteButton.addActionListener(ivjEventHandler);
        getScrollPaneTable().getSelectionModel().addListSelectionListener(ivjEventHandler);
        initConnections();
        getScrollPaneTable().setDefaultRenderer(Double.class, new DefaultScrollTableCellRenderer() {

            @Override
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                setHorizontalAlignment(RIGHT);
                return this;
            }
        });
    } catch (java.lang.Throwable ivjExc) {
        handleException(ivjExc);
    }
}

Example 3 with DefaultScrollTableCellRenderer

use of org.vcell.util.gui.DefaultScrollTableCellRenderer in project vcell by virtualcell.

the class NetworkConstraintsPanel method initialize.

private void initialize() {
    seedSpeciesLabel = new JLabel();
    reactionRulesLabel = new JLabel();
    generatedSpeciesLabel = new JLabel();
    generatedReactionsLabel = new JLabel();
    observablesMapLabel = new JLabel("Observables Map");
    somethingInsufficientLabel = new JLabel();
    networkConstraintsTable = new EditorScrollTable();
    networkConstraintsTableModel = new NetworkConstraintsTableModel(networkConstraintsTable);
    networkConstraintsTable.setModel(networkConstraintsTableModel);
    getViewGeneratedSpeciesButton().addActionListener(eventHandler);
    getViewGeneratedReactionsButton().addActionListener(eventHandler);
    getViewObservablesMapButton().addActionListener(eventHandler);
    getRefreshMathButton().addActionListener(eventHandler);
    getCreateModelButton().addActionListener(eventHandler);
    // ------------------------------------------- The 2 group boxes --------------------------
    JPanel thePanel = new JPanel();
    Border loweredEtchedBorder = BorderFactory.createEtchedBorder(EtchedBorder.LOWERED);
    Border loweredBevelBorder = BorderFactory.createLoweredBevelBorder();
    TitledBorder titleTop = BorderFactory.createTitledBorder(loweredEtchedBorder, " Network Constraints ");
    titleTop.setTitleJustification(TitledBorder.LEFT);
    titleTop.setTitlePosition(TitledBorder.TOP);
    TitledBorder titleBottom = BorderFactory.createTitledBorder(loweredEtchedBorder, " Generated Network ");
    titleBottom.setTitleJustification(TitledBorder.LEFT);
    titleBottom.setTitlePosition(TitledBorder.TOP);
    setLayout(new GridBagLayout());
    GridBagConstraints gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 0;
    gbc.weightx = 1;
    gbc.weighty = 1;
    gbc.fill = GridBagConstraints.BOTH;
    gbc.insets = new Insets(1, 1, 1, 1);
    add(thePanel, gbc);
    // ------------------------------------------- Populating the top group box ---------------
    JPanel top = new JPanel();
    JPanel bottom = new JPanel();
    top.setBorder(titleTop);
    bottom.setBorder(titleBottom);
    thePanel.setLayout(new GridBagLayout());
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 0;
    gbc.weightx = 1.0;
    gbc.weighty = 1.0;
    gbc.fill = GridBagConstraints.BOTH;
    // top, left, bottom, right
    gbc.insets = new Insets(5, 2, 2, 3);
    thePanel.add(top, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 1;
    gbc.weightx = 0;
    gbc.weighty = 0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(5, 2, 2, 3);
    thePanel.add(bottom, gbc);
    // we may want to use a scroll pane whose viewing area is the JTable to provide similar look with NetGen Console
    JScrollPane p = new JScrollPane(networkConstraintsTable);
    p.setHorizontalScrollBarPolicy(ScrollPaneConstants.HORIZONTAL_SCROLLBAR_NEVER);
    // --- bottom
    top.setLayout(new GridBagLayout());
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 0;
    gbc.weightx = gbc.weighty = 1.0;
    gbc.fill = GridBagConstraints.BOTH;
    gbc.anchor = GridBagConstraints.NORTHWEST;
    gbc.insets = new Insets(5, 4, 4, 10);
    top.add(p, gbc);
    // ------------------------------------------- Populating the right group box ------------
    // --- top
    bottom.setLayout(new GridBagLayout());
    int gridy = 0;
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = gridy;
    gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(4, 11, 1, 10);
    bottom.add(generatedSpeciesLabel, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = gridy;
    // gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(4, 4, 1, 10);
    bottom.add(getViewGeneratedSpeciesButton(), gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 2;
    gbc.gridy = gridy;
    // gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(4, 4, 1, 10);
    bottom.add(getRefreshMathButton(), gbc);
    gridy++;
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = gridy;
    gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(3, 11, 1, 10);
    bottom.add(generatedReactionsLabel, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = gridy;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(3, 4, 1, 10);
    bottom.add(getViewGeneratedReactionsButton(), gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 2;
    gbc.gridy = gridy;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(3, 4, 1, 10);
    bottom.add(getCreateModelButton(), gbc);
    gridy++;
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = gridy;
    gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(3, 11, 1, 10);
    bottom.add(observablesMapLabel, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = gridy;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(3, 4, 1, 10);
    bottom.add(getViewObservablesMapButton(), gbc);
    gridy++;
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = gridy;
    gbc.weightx = 1.0;
    gbc.gridwidth = 4;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(3, 11, 4, 10);
    bottom.add(somethingInsufficientLabel, gbc);
    networkConstraintsTable.setDefaultRenderer(String.class, new DefaultScrollTableCellRenderer());
}

Example 4 with DefaultScrollTableCellRenderer

use of org.vcell.util.gui.DefaultScrollTableCellRenderer in project vcell by virtualcell.

the class InitialConditionsPanel method initialize.

/**
 * Initialize the class.
 */
/* WARNING: THIS METHOD WILL BE REGENERATED. */
private void initialize() {
    try {
        // user code begin {1}
        // user code end
        setName("InitialConditionsPanel");
        setLayout(new BorderLayout());
        add(getRadioButtonAndCheckboxPanel(), BorderLayout.NORTH);
        add(getScrollPaneTable().getEnclosingScrollPane(), BorderLayout.CENTER);
        getScrollPaneTable().getSelectionModel().addListSelectionListener(ivjEventHandler);
        getJMenuItemPaste().addActionListener(ivjEventHandler);
        getJMenuItemCopy().addActionListener(ivjEventHandler);
        getJMenuItemCopyAll().addActionListener(ivjEventHandler);
        getJMenuItemPasteAll().addActionListener(ivjEventHandler);
        getAmountRadioButton().addActionListener(ivjEventHandler);
        getConcentrationRadioButton().addActionListener(ivjEventHandler);
        getRandomizeInitCondnCheckbox().addActionListener(ivjEventHandler);
        DefaultTableCellRenderer renderer = new DefaultScrollTableCellRenderer() {

            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                setIcon(null);
                defaultToolTipText = null;
                if (value instanceof Species) {
                    setText(((Species) value).getCommonName());
                    defaultToolTipText = getText();
                    setToolTipText(defaultToolTipText);
                } else if (value instanceof SpeciesContext) {
                    setText(((SpeciesContext) value).getName());
                    defaultToolTipText = getText();
                    setToolTipText(defaultToolTipText);
                } else if (value instanceof Structure) {
                    setText(((Structure) value).getName());
                    defaultToolTipText = getText();
                    setToolTipText(defaultToolTipText);
                } else if (value instanceof ScopedExpression) {
                    SpeciesContextSpec scSpec = tableModel.getValueAt(row);
                    VCUnitDefinition unit = null;
                    if (table.getColumnName(column).equals(SpeciesContextSpecsTableModel.ColumnType.COLUMN_INITIAL.label)) {
                        SpeciesContextSpecParameter initialConditionParameter = scSpec.getInitialConditionParameter();
                        unit = initialConditionParameter.getUnitDefinition();
                    } else if (table.getColumnName(column).equals(SpeciesContextSpecsTableModel.ColumnType.COLUMN_DIFFUSION.label)) {
                        SpeciesContextSpecParameter diffusionParameter = scSpec.getDiffusionParameter();
                        unit = diffusionParameter.getUnitDefinition();
                    }
                    if (unit != null) {
                        setHorizontalTextPosition(JLabel.LEFT);
                        setIcon(new TextIcon("[" + unit.getSymbolUnicode() + "]", DefaultScrollTableCellRenderer.uneditableForeground));
                    }
                    int rgb = 0x00ffffff & DefaultScrollTableCellRenderer.uneditableForeground.getRGB();
                    defaultToolTipText = "<html>" + StringEscapeUtils.escapeHtml4(getText()) + " <font color=#" + Integer.toHexString(rgb) + "> [" + unit.getSymbolUnicode() + "] </font></html>";
                    setToolTipText(defaultToolTipText);
                    if (unit != null) {
                        setText(defaultToolTipText);
                    }
                }
                TableModel tableModel = table.getModel();
                if (tableModel instanceof SortTableModel) {
                    DefaultScrollTableCellRenderer.issueRenderer(this, defaultToolTipText, table, row, column, (SortTableModel) tableModel);
                    setHorizontalTextPosition(JLabel.TRAILING);
                }
                return this;
            }
        };
        DefaultTableCellRenderer rbmSpeciesShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {

            SpeciesPatternSmallShape spss = null;

            @Override
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                if (table.getModel() instanceof VCellSortTableModel<?>) {
                    Object selectedObject = null;
                    if (table.getModel() == tableModel) {
                        selectedObject = tableModel.getValueAt(row);
                    }
                    if (selectedObject != null) {
                        if (selectedObject instanceof SpeciesContextSpec) {
                            SpeciesContextSpec scs = (SpeciesContextSpec) selectedObject;
                            SpeciesContext sc = scs.getSpeciesContext();
                            // sp may be null for "plain" species contexts
                            SpeciesPattern sp = sc.getSpeciesPattern();
                            Graphics panelContext = table.getGraphics();
                            spss = new SpeciesPatternSmallShape(4, 2, sp, shapeManager, panelContext, sc, isSelected, issueManager);
                        }
                    } else {
                        spss = null;
                    }
                }
                setText("");
                return this;
            }

            @Override
            public void paintComponent(Graphics g) {
                super.paintComponent(g);
                if (spss != null) {
                    spss.paintSelf(g);
                }
            }
        };
        DefaultScrollTableCellRenderer rulesTableCellRenderer = new DefaultScrollTableCellRenderer() {

            final Color lightBlueBackground = new Color(214, 234, 248);

            @Override
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                if (table.getModel() instanceof SpeciesContextSpecsTableModel) {
                    Icon icon = VCellIcons.issueGoodIcon;
                    Object selectedObject = null;
                    if (table.getModel() == tableModel) {
                        selectedObject = tableModel.getValueAt(row);
                    }
                    if (selectedObject != null) {
                        if (isSelected) {
                            setBackground(lightBlueBackground);
                        }
                        if (selectedObject instanceof SpeciesContextSpec) {
                            SpeciesContextSpec scs = (SpeciesContextSpec) selectedObject;
                            SpeciesContext sc = scs.getSpeciesContext();
                            boolean foundRuleMatch = false;
                            if (fieldSimulationContext.getRateRules() != null && fieldSimulationContext.getRateRules().length > 0) {
                                for (RateRule rr : fieldSimulationContext.getRateRules()) {
                                    if (rr.getRateRuleVar() == null) {
                                        continue;
                                    }
                                    if (sc.getName().equals(rr.getRateRuleVar().getName())) {
                                        foundRuleMatch = true;
                                        icon = VCellIcons.ruleRateIcon;
                                        break;
                                    }
                                }
                            }
                            if (!foundRuleMatch && fieldSimulationContext.getAssignmentRules() != null && fieldSimulationContext.getAssignmentRules().length > 0) {
                                for (AssignmentRule rr : fieldSimulationContext.getAssignmentRules()) {
                                    if (rr.getAssignmentRuleVar() == null) {
                                        continue;
                                    }
                                    if (sc.getName().equals(rr.getAssignmentRuleVar().getName())) {
                                        icon = VCellIcons.ruleAssignIcon;
                                        break;
                                    }
                                }
                            }
                        }
                    }
                    setIcon(icon);
                }
                return this;
            }
        };
        getScrollPaneTable().setDefaultRenderer(SpeciesContext.class, renderer);
        getScrollPaneTable().setDefaultRenderer(Structure.class, renderer);
        // depiction icons
        getScrollPaneTable().setDefaultRenderer(SpeciesPattern.class, rbmSpeciesShapeDepictionCellRenderer);
        getScrollPaneTable().setDefaultRenderer(Species.class, renderer);
        getScrollPaneTable().setDefaultRenderer(ScopedExpression.class, renderer);
        getScrollPaneTable().setDefaultRenderer(Boolean.class, new ScrollTableBooleanCellRenderer());
        // rules icons
        getScrollPaneTable().setDefaultRenderer(SpeciesContextSpecsTableModel.RulesProvenance.class, rulesTableCellRenderer);
    // TODO: find out why the code below is not working properly
    // int ordinal = SpeciesContextSpecsTableModel.ColumnType.COLUMN_RULES.ordinal();
    // getScrollPaneTable().getColumnModel().getColumn(ordinal).setCellRenderer(rulesTableCellRenderer);
    // final int rulesWidth = 50;		// fixed max size, there's no point to enlarge some columns
    // int index = SpeciesContextSpecsTableModel.ColumnType.COLUMN_RULES.ordinal();
    // getScrollPaneTable().getColumnModel().getColumn(index).setPreferredWidth(rulesWidth);
    // getScrollPaneTable().getColumnModel().getColumn(index).setMaxWidth(rulesWidth);
    } catch (java.lang.Throwable ivjExc) {
        handleException(ivjExc);
    }
}

Example 5 with DefaultScrollTableCellRenderer

use of org.vcell.util.gui.DefaultScrollTableCellRenderer in project vcell by virtualcell.

the class ModelProcessSpecsPanel method initConnections.

/**
 * Initializes connections
 * @exception java.lang.Exception The exception description.
 */
/* WARNING: THIS METHOD WILL BE REGENERATED. */
private void initConnections() throws java.lang.Exception {
    // user code begin {1}
    // user code end
    this.addPropertyChangeListener(ivjEventHandler);
    getScrollPaneTable().setModel(getModelProcessSpecsTableModel());
    getScrollPaneTable().setDefaultRenderer(ModelProcess.class, new DefaultScrollTableCellRenderer() {

        public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
            super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
            defaultToolTipText = null;
            if (value instanceof ModelProcess) {
                setText(((ModelProcess) value).getName());
                defaultToolTipText = getText();
                setToolTipText(defaultToolTipText);
            }
            TableModel tableModel = table.getModel();
            if (tableModel instanceof SortTableModel) {
                DefaultScrollTableCellRenderer.issueRenderer(this, defaultToolTipText, table, row, column, (SortTableModel) tableModel);
            }
            return this;
        }
    });
    DefaultScrollTableCellRenderer rbmReactionShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {

        List<SpeciesPatternSmallShape> spssList = new ArrayList<SpeciesPatternSmallShape>();

        SpeciesPatternSmallShape spss = null;

        @Override
        public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
            super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
            if (table.getModel() instanceof VCellSortTableModel<?>) {
                Object selectedObject = null;
                if (table.getModel() == ivjModelProcessSpecsTableModel) {
                    selectedObject = ivjModelProcessSpecsTableModel.getValueAt(row);
                }
                if (selectedObject != null) {
                    if (selectedObject instanceof ModelProcessSpec) {
                        ModelProcessSpec mps = (ModelProcessSpec) selectedObject;
                        ModelProcess mp = (ModelProcess) mps.getModelProcess();
                        if (mp instanceof ReactionRule) {
                            ReactionRule rr = (ReactionRule) mp;
                            Graphics panelContext = table.getGraphics();
                            spssList.clear();
                            List<ReactantPattern> rpList = rr.getReactantPatterns();
                            int xPos = 4;
                            for (int i = 0; i < rpList.size(); i++) {
                                SpeciesPattern sp = rr.getReactantPattern(i).getSpeciesPattern();
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rr, isSelected, issueManager);
                                if (i < rpList.size() - 1) {
                                    spss.addEndText("+");
                                } else {
                                    if (rr.isReversible()) {
                                        spss.addEndText("<->");
                                        xPos += 7;
                                    } else {
                                        spss.addEndText("->");
                                    }
                                }
                                xPos += spss.getWidth() + 15;
                                spssList.add(spss);
                            }
                            List<ProductPattern> ppList = rr.getProductPatterns();
                            xPos += 7;
                            for (int i = 0; i < ppList.size(); i++) {
                                SpeciesPattern sp = rr.getProductPattern(i).getSpeciesPattern();
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rr, isSelected, issueManager);
                                if (i < ppList.size() - 1) {
                                    spss.addEndText("+");
                                }
                                xPos += spss.getWidth() + 15;
                                spssList.add(spss);
                            }
                        } else {
                            ReactionStep rs = (ReactionStep) mp;
                            Graphics panelContext = table.getGraphics();
                            spssList.clear();
                            int xPos = 4;
                            int extraSpace = 0;
                            for (int i = 0; i < rs.getNumReactants(); i++) {
                                SpeciesPattern sp = rs.getReactant(i).getSpeciesContext().getSpeciesPattern();
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rs, isSelected, issueManager);
                                if (i < rs.getNumReactants() - 1) {
                                    spss.addEndText("+");
                                } else {
                                    if (rs.isReversible()) {
                                        spss.addEndText("<->");
                                        extraSpace += 7;
                                    } else {
                                        spss.addEndText("->");
                                    }
                                }
                                int offset = sp == null ? 17 : 15;
                                offset += extraSpace;
                                int w = spss.getWidth();
                                xPos += w + offset;
                                spssList.add(spss);
                            }
                            xPos += 8;
                            for (int i = 0; i < rs.getNumProducts(); i++) {
                                SpeciesPattern sp = rs.getProduct(i).getSpeciesContext().getSpeciesPattern();
                                if (i == 0 && rs.getNumReactants() == 0) {
                                    xPos += 14;
                                }
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rs, isSelected, issueManager);
                                if (i == 0 && rs.getNumReactants() == 0) {
                                    spss.addStartText("->");
                                }
                                if (i < rs.getNumProducts() - 1) {
                                    spss.addEndText("+");
                                }
                                int offset = sp == null ? 17 : 15;
                                int w = spss.getWidth();
                                xPos += w + offset;
                                spssList.add(spss);
                            }
                        }
                    }
                } else {
                    spssList.clear();
                }
            }
            setText("");
            return this;
        }

        @Override
        public void paintComponent(Graphics g) {
            super.paintComponent(g);
            for (SpeciesPatternSmallShape spss : spssList) {
                if (spss == null) {
                    continue;
                }
                spss.paintSelf(g);
            }
        }
    };
    getScrollPaneTable().setDefaultRenderer(SpeciesPattern.class, rbmReactionShapeDepictionCellRenderer);
    // ivjScrollPaneTable.getColumnModel().getColumn(ModelProcessSpecsTableModel.ColumnType.COLUMN_DEPICTION.ordinal()).setCellRenderer(rbmReactionShapeDepictionCellRenderer);
    // ivjScrollPaneTable.getColumnModel().getColumn(ModelProcessSpecsTableModel.ColumnType.COLUMN_DEPICTION.ordinal()).setPreferredWidth(180);
    getScrollPaneTable().getSelectionModel().addListSelectionListener(ivjEventHandler);
}