Search in sources :

Example 1 with SortTableModel

use of org.vcell.util.gui.sorttable.SortTableModel in project vcell by virtualcell.

the class DefaultScrollTableCellRenderer method getTableCellRendererComponent.

/**
 * Insert the method's description here.
 * Creation date: (3/27/2001 1:07:02 PM)
 * @return java.awt.Component
 * @param table javax.swing.JTable
 * @param value java.lang.Object
 * @param isSelected boolean
 * @param hasFocus boolean
 * @param row int
 * @param column int
 */
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
    defaultToolTipText = null;
    super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
    defaultToolTipText = getToolTipText();
    setBorder(DEFAULT_GAP);
    if (isSelected) {
        setBackground(table.getSelectionBackground());
        setForeground(table.getSelectionForeground());
    } else {
        if (table instanceof ScrollTable && ((ScrollTable) table).getHoverRow() == row) {
            setBackground(hoverColor);
        } else {
            setBackground(row % 2 == 0 ? table.getBackground() : everyOtherRowColor);
        }
        if (table.getModel() instanceof SpatialProcessTableModel) /* && column == SpatialProcessTableModel.COLUMN_SpatialProcess_SPATIALOBJECTS */
        {
            boolean found = isMatchWithSelectedObject(table, row);
            if (found == true) {
                setBackground(Color.yellow);
            }
        } else if (table.getModel() instanceof SpatialObjectTableModel) /* && column == SpatialObjectTableModel.COLUMN_SpatialObject_NAME */
        {
            boolean found = isMatchWithSelectedProcess(table, row);
            if (found == true) {
                setBackground(Color.yellow);
            }
        }
        setForeground(table.getForeground());
    }
    TableModel tableModel = table.getModel();
    if (bEnableUneditableForeground && (!table.isEnabled() || !tableModel.isCellEditable(row, column))) {
        if (!isSelected) {
            setForeground(uneditableForeground);
            if (tableModel instanceof NetworkConstraintsTableModel && column == NetworkConstraintsTableModel.iColValue) {
                NetworkConstraintsTableModel tm = (NetworkConstraintsTableModel) tableModel;
                String def = (String) tm.getValueAt(row, NetworkConstraintsTableModel.iColDefault);
                String val = (String) value;
                if (!val.equals(def)) {
                    value = "<html><b>" + value + "</b></html>";
                    setForeground(Color.red);
                }
            }
        }
    }
    if (value instanceof Double) {
        Double doubleValue = (Double) value;
        setText(nicelyFormattedDouble(doubleValue));
    } else if (value instanceof JComponent) {
        JComponent jc = (JComponent) value;
        if (hasFocus) {
            jc.setBorder(focusHighlightBorder);
        } else {
            jc.setBorder(noFocusBorder);
        }
        return jc;
    }
    if (BioModelEditorRightSideTableModel.ADD_NEW_HERE_TEXT.equals(value)) {
        setText(BioModelEditorRightSideTableModel.ADD_NEW_HERE_HTML);
    } else if (value instanceof ModelProcessEquation && BioModelEditorRightSideTableModel.ADD_NEW_HERE_REACTION_TEXT.equals(((ModelProcessEquation) value).toString())) {
        setText(BioModelEditorRightSideTableModel.ADD_NEW_REACTION_OR_RULE_HTML);
    }
    if (tableModel instanceof BioModelEditorApplicationsTableModel) {
        // for the applications table we show the icons with the app type
        Icon icon = null;
        String toolTipSuffix = "";
        BioModelEditorApplicationsTableModel bmeatm = (BioModelEditorApplicationsTableModel) tableModel;
        SimulationContext simContext = (SimulationContext) (bmeatm.getValueAt(row));
        if (simContext.isRuleBased()) {
            if (simContext.getGeometry().getDimension() == 0) {
                icon = VCellIcons.appRbmNonspIcon;
                toolTipSuffix = "Rule Based / Non spatial";
            }
        } else if (simContext.isStoch()) {
            if (simContext.getGeometry().getDimension() == 0) {
                icon = VCellIcons.appStoNonspIcon;
                toolTipSuffix = "Stochastic / Non spatial";
            } else {
                icon = VCellIcons.appStoSpatialIcon;
                toolTipSuffix = "Stochastic / Spatial";
            }
        } else {
            // deterministic
            if (simContext.getGeometry().getDimension() == 0) {
                icon = VCellIcons.appDetNonspIcon;
                toolTipSuffix = "Deterministic / Non spatial";
            } else {
                icon = VCellIcons.appDetSpatialIcon;
                toolTipSuffix = "Deterministic / Spatial";
            }
        }
        String toolTipPrefix = "Application: ";
        setToolTipText(toolTipPrefix + toolTipSuffix);
        if (column == 0) {
            setIcon(icon);
        } else {
            setIcon(null);
        }
    } else if (column == 2 && tableModel instanceof SpatialProcessTableModel) {
        Icon icon = null;
        SpatialProcess spatialProcess = (SpatialProcess) (((SpatialProcessTableModel) tableModel).getValueAt(row));
        if (spatialProcess instanceof PointLocation) {
            icon = VCellIcons.spatialPointIcon;
        } else if (spatialProcess instanceof PointKinematics) {
            icon = VCellIcons.spatialPointIcon;
        } else if (spatialProcess instanceof SurfaceKinematics) {
            icon = VCellIcons.spatialMembraneIcon;
        } else {
            icon = VCellIcons.spatialVolumeIcon;
        }
        setIcon(icon);
    } else if (tableModel instanceof SortTableModel) {
        // for most other tables we reserve the icon spot to display issues
        DefaultScrollTableCellRenderer.issueRenderer(this, defaultToolTipText, table, row, column, (SortTableModel) tableModel);
    }
    return this;
}
Also used : SortTableModel(org.vcell.util.gui.sorttable.SortTableModel) PointLocation(cbit.vcell.mapping.spatial.processes.PointLocation) SurfaceKinematics(cbit.vcell.mapping.spatial.processes.SurfaceKinematics) JComponent(javax.swing.JComponent) NetworkConstraintsTableModel(cbit.vcell.mapping.gui.NetworkConstraintsTableModel) SpatialObjectTableModel(cbit.vcell.client.desktop.biomodel.SpatialObjectTableModel) SimulationContext(cbit.vcell.mapping.SimulationContext) BioModelEditorApplicationsTableModel(cbit.vcell.client.desktop.biomodel.BioModelEditorApplicationsTableModel) SpatialProcess(cbit.vcell.mapping.spatial.processes.SpatialProcess) PointKinematics(cbit.vcell.mapping.spatial.processes.PointKinematics) ModelProcessEquation(cbit.gui.ModelProcessEquation) SpatialProcessTableModel(cbit.vcell.client.desktop.biomodel.SpatialProcessTableModel) Icon(javax.swing.Icon) BioModelEditorRightSideTableModel(cbit.vcell.client.desktop.biomodel.BioModelEditorRightSideTableModel) BioModelEditorApplicationsTableModel(cbit.vcell.client.desktop.biomodel.BioModelEditorApplicationsTableModel) NetworkConstraintsTableModel(cbit.vcell.mapping.gui.NetworkConstraintsTableModel) SpatialProcessTableModel(cbit.vcell.client.desktop.biomodel.SpatialProcessTableModel) TableModel(javax.swing.table.TableModel) SortTableModel(org.vcell.util.gui.sorttable.SortTableModel) SpatialObjectTableModel(cbit.vcell.client.desktop.biomodel.SpatialObjectTableModel)

Example 2 with SortTableModel

use of org.vcell.util.gui.sorttable.SortTableModel in project vcell by virtualcell.

the class InitialConditionsPanel method initialize.

/**
 * Initialize the class.
 */
/* WARNING: THIS METHOD WILL BE REGENERATED. */
private void initialize() {
    try {
        // user code begin {1}
        // user code end
        setName("InitialConditionsPanel");
        setLayout(new BorderLayout());
        add(getRadioButtonAndCheckboxPanel(), BorderLayout.NORTH);
        add(getScrollPaneTable().getEnclosingScrollPane(), BorderLayout.CENTER);
        getScrollPaneTable().getSelectionModel().addListSelectionListener(ivjEventHandler);
        getJMenuItemPaste().addActionListener(ivjEventHandler);
        getJMenuItemCopy().addActionListener(ivjEventHandler);
        getJMenuItemCopyAll().addActionListener(ivjEventHandler);
        getJMenuItemPasteAll().addActionListener(ivjEventHandler);
        getAmountRadioButton().addActionListener(ivjEventHandler);
        getConcentrationRadioButton().addActionListener(ivjEventHandler);
        getRandomizeInitCondnCheckbox().addActionListener(ivjEventHandler);
        DefaultTableCellRenderer renderer = new DefaultScrollTableCellRenderer() {

            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                setIcon(null);
                defaultToolTipText = null;
                if (value instanceof Species) {
                    setText(((Species) value).getCommonName());
                    defaultToolTipText = getText();
                    setToolTipText(defaultToolTipText);
                } else if (value instanceof SpeciesContext) {
                    setText(((SpeciesContext) value).getName());
                    defaultToolTipText = getText();
                    setToolTipText(defaultToolTipText);
                } else if (value instanceof Structure) {
                    setText(((Structure) value).getName());
                    defaultToolTipText = getText();
                    setToolTipText(defaultToolTipText);
                } else if (value instanceof ScopedExpression) {
                    SpeciesContextSpec scSpec = tableModel.getValueAt(row);
                    VCUnitDefinition unit = null;
                    if (table.getColumnName(column).equals(SpeciesContextSpecsTableModel.ColumnType.COLUMN_INITIAL.label)) {
                        SpeciesContextSpecParameter initialConditionParameter = scSpec.getInitialConditionParameter();
                        unit = initialConditionParameter.getUnitDefinition();
                    } else if (table.getColumnName(column).equals(SpeciesContextSpecsTableModel.ColumnType.COLUMN_DIFFUSION.label)) {
                        SpeciesContextSpecParameter diffusionParameter = scSpec.getDiffusionParameter();
                        unit = diffusionParameter.getUnitDefinition();
                    }
                    if (unit != null) {
                        setHorizontalTextPosition(JLabel.LEFT);
                        setIcon(new TextIcon("[" + unit.getSymbolUnicode() + "]", DefaultScrollTableCellRenderer.uneditableForeground));
                    }
                    int rgb = 0x00ffffff & DefaultScrollTableCellRenderer.uneditableForeground.getRGB();
                    defaultToolTipText = "<html>" + StringEscapeUtils.escapeHtml4(getText()) + " <font color=#" + Integer.toHexString(rgb) + "> [" + unit.getSymbolUnicode() + "] </font></html>";
                    setToolTipText(defaultToolTipText);
                    if (unit != null) {
                        setText(defaultToolTipText);
                    }
                }
                TableModel tableModel = table.getModel();
                if (tableModel instanceof SortTableModel) {
                    DefaultScrollTableCellRenderer.issueRenderer(this, defaultToolTipText, table, row, column, (SortTableModel) tableModel);
                    setHorizontalTextPosition(JLabel.TRAILING);
                }
                return this;
            }
        };
        DefaultTableCellRenderer rbmSpeciesShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {

            SpeciesPatternSmallShape spss = null;

            @Override
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                if (table.getModel() instanceof VCellSortTableModel<?>) {
                    Object selectedObject = null;
                    if (table.getModel() == tableModel) {
                        selectedObject = tableModel.getValueAt(row);
                    }
                    if (selectedObject != null) {
                        if (selectedObject instanceof SpeciesContextSpec) {
                            SpeciesContextSpec scs = (SpeciesContextSpec) selectedObject;
                            SpeciesContext sc = scs.getSpeciesContext();
                            // sp may be null for "plain" species contexts
                            SpeciesPattern sp = sc.getSpeciesPattern();
                            Graphics panelContext = table.getGraphics();
                            spss = new SpeciesPatternSmallShape(4, 2, sp, shapeManager, panelContext, sc, isSelected, issueManager);
                        }
                    } else {
                        spss = null;
                    }
                }
                setText("");
                return this;
            }

            @Override
            public void paintComponent(Graphics g) {
                super.paintComponent(g);
                if (spss != null) {
                    spss.paintSelf(g);
                }
            }
        };
        DefaultScrollTableCellRenderer rulesTableCellRenderer = new DefaultScrollTableCellRenderer() {

            final Color lightBlueBackground = new Color(214, 234, 248);

            @Override
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                if (table.getModel() instanceof SpeciesContextSpecsTableModel) {
                    Icon icon = VCellIcons.issueGoodIcon;
                    Object selectedObject = null;
                    if (table.getModel() == tableModel) {
                        selectedObject = tableModel.getValueAt(row);
                    }
                    if (selectedObject != null) {
                        if (isSelected) {
                            setBackground(lightBlueBackground);
                        }
                        if (selectedObject instanceof SpeciesContextSpec) {
                            SpeciesContextSpec scs = (SpeciesContextSpec) selectedObject;
                            SpeciesContext sc = scs.getSpeciesContext();
                            boolean foundRuleMatch = false;
                            if (fieldSimulationContext.getRateRules() != null && fieldSimulationContext.getRateRules().length > 0) {
                                for (RateRule rr : fieldSimulationContext.getRateRules()) {
                                    if (rr.getRateRuleVar() == null) {
                                        continue;
                                    }
                                    if (sc.getName().equals(rr.getRateRuleVar().getName())) {
                                        foundRuleMatch = true;
                                        icon = VCellIcons.ruleRateIcon;
                                        break;
                                    }
                                }
                            }
                            if (!foundRuleMatch && fieldSimulationContext.getAssignmentRules() != null && fieldSimulationContext.getAssignmentRules().length > 0) {
                                for (AssignmentRule rr : fieldSimulationContext.getAssignmentRules()) {
                                    if (rr.getAssignmentRuleVar() == null) {
                                        continue;
                                    }
                                    if (sc.getName().equals(rr.getAssignmentRuleVar().getName())) {
                                        icon = VCellIcons.ruleAssignIcon;
                                        break;
                                    }
                                }
                            }
                        }
                    }
                    setIcon(icon);
                }
                return this;
            }
        };
        getScrollPaneTable().setDefaultRenderer(SpeciesContext.class, renderer);
        getScrollPaneTable().setDefaultRenderer(Structure.class, renderer);
        // depiction icons
        getScrollPaneTable().setDefaultRenderer(SpeciesPattern.class, rbmSpeciesShapeDepictionCellRenderer);
        getScrollPaneTable().setDefaultRenderer(Species.class, renderer);
        getScrollPaneTable().setDefaultRenderer(ScopedExpression.class, renderer);
        getScrollPaneTable().setDefaultRenderer(Boolean.class, new ScrollTableBooleanCellRenderer());
        // rules icons
        getScrollPaneTable().setDefaultRenderer(SpeciesContextSpecsTableModel.RulesProvenance.class, rulesTableCellRenderer);
    // TODO: find out why the code below is not working properly
    // int ordinal = SpeciesContextSpecsTableModel.ColumnType.COLUMN_RULES.ordinal();
    // getScrollPaneTable().getColumnModel().getColumn(ordinal).setCellRenderer(rulesTableCellRenderer);
    // final int rulesWidth = 50;		// fixed max size, there's no point to enlarge some columns
    // int index = SpeciesContextSpecsTableModel.ColumnType.COLUMN_RULES.ordinal();
    // getScrollPaneTable().getColumnModel().getColumn(index).setPreferredWidth(rulesWidth);
    // getScrollPaneTable().getColumnModel().getColumn(index).setMaxWidth(rulesWidth);
    } catch (java.lang.Throwable ivjExc) {
        handleException(ivjExc);
    }
}
Also used : VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel) SortTableModel(org.vcell.util.gui.sorttable.SortTableModel) SpeciesPatternSmallShape(cbit.vcell.graph.SpeciesPatternSmallShape) SpeciesContext(cbit.vcell.model.SpeciesContext) SpeciesContextSpec(cbit.vcell.mapping.SpeciesContextSpec) SpeciesPattern(org.vcell.model.rbm.SpeciesPattern) DefaultTableCellRenderer(javax.swing.table.DefaultTableCellRenderer) BorderLayout(java.awt.BorderLayout) VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel) RateRule(cbit.vcell.mapping.RateRule) Structure(cbit.vcell.model.Structure) Species(cbit.vcell.model.Species) SpeciesContextSpecParameter(cbit.vcell.mapping.SpeciesContextSpec.SpeciesContextSpecParameter) TextIcon(cbit.vcell.mapping.gui.StructureMappingTableRenderer.TextIcon) AssignmentRule(cbit.vcell.mapping.AssignmentRule) Color(java.awt.Color) ScrollTableBooleanCellRenderer(org.vcell.util.gui.ScrollTable.ScrollTableBooleanCellRenderer) Graphics(java.awt.Graphics) VCUnitDefinition(cbit.vcell.units.VCUnitDefinition) ScopedExpression(cbit.gui.ScopedExpression) JTable(javax.swing.JTable) DefaultScrollTableCellRenderer(org.vcell.util.gui.DefaultScrollTableCellRenderer) Icon(javax.swing.Icon) TextIcon(cbit.vcell.mapping.gui.StructureMappingTableRenderer.TextIcon) TableModel(javax.swing.table.TableModel) VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel) SortTableModel(org.vcell.util.gui.sorttable.SortTableModel)

Example 3 with SortTableModel

use of org.vcell.util.gui.sorttable.SortTableModel in project vcell by virtualcell.

the class ModelProcessSpecsPanel method initConnections.

/**
 * Initializes connections
 * @exception java.lang.Exception The exception description.
 */
/* WARNING: THIS METHOD WILL BE REGENERATED. */
private void initConnections() throws java.lang.Exception {
    // user code begin {1}
    // user code end
    this.addPropertyChangeListener(ivjEventHandler);
    getScrollPaneTable().setModel(getModelProcessSpecsTableModel());
    getScrollPaneTable().setDefaultRenderer(ModelProcess.class, new DefaultScrollTableCellRenderer() {

        public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
            super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
            defaultToolTipText = null;
            if (value instanceof ModelProcess) {
                setText(((ModelProcess) value).getName());
                defaultToolTipText = getText();
                setToolTipText(defaultToolTipText);
            }
            TableModel tableModel = table.getModel();
            if (tableModel instanceof SortTableModel) {
                DefaultScrollTableCellRenderer.issueRenderer(this, defaultToolTipText, table, row, column, (SortTableModel) tableModel);
            }
            return this;
        }
    });
    DefaultScrollTableCellRenderer rbmReactionShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {

        List<SpeciesPatternSmallShape> spssList = new ArrayList<SpeciesPatternSmallShape>();

        SpeciesPatternSmallShape spss = null;

        @Override
        public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
            super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
            if (table.getModel() instanceof VCellSortTableModel<?>) {
                Object selectedObject = null;
                if (table.getModel() == ivjModelProcessSpecsTableModel) {
                    selectedObject = ivjModelProcessSpecsTableModel.getValueAt(row);
                }
                if (selectedObject != null) {
                    if (selectedObject instanceof ModelProcessSpec) {
                        ModelProcessSpec mps = (ModelProcessSpec) selectedObject;
                        ModelProcess mp = (ModelProcess) mps.getModelProcess();
                        if (mp instanceof ReactionRule) {
                            ReactionRule rr = (ReactionRule) mp;
                            Graphics panelContext = table.getGraphics();
                            spssList.clear();
                            List<ReactantPattern> rpList = rr.getReactantPatterns();
                            int xPos = 4;
                            for (int i = 0; i < rpList.size(); i++) {
                                SpeciesPattern sp = rr.getReactantPattern(i).getSpeciesPattern();
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rr, isSelected, issueManager);
                                if (i < rpList.size() - 1) {
                                    spss.addEndText("+");
                                } else {
                                    if (rr.isReversible()) {
                                        spss.addEndText("<->");
                                        xPos += 7;
                                    } else {
                                        spss.addEndText("->");
                                    }
                                }
                                xPos += spss.getWidth() + 15;
                                spssList.add(spss);
                            }
                            List<ProductPattern> ppList = rr.getProductPatterns();
                            xPos += 7;
                            for (int i = 0; i < ppList.size(); i++) {
                                SpeciesPattern sp = rr.getProductPattern(i).getSpeciesPattern();
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rr, isSelected, issueManager);
                                if (i < ppList.size() - 1) {
                                    spss.addEndText("+");
                                }
                                xPos += spss.getWidth() + 15;
                                spssList.add(spss);
                            }
                        } else {
                            ReactionStep rs = (ReactionStep) mp;
                            Graphics panelContext = table.getGraphics();
                            spssList.clear();
                            int xPos = 4;
                            int extraSpace = 0;
                            for (int i = 0; i < rs.getNumReactants(); i++) {
                                SpeciesPattern sp = rs.getReactant(i).getSpeciesContext().getSpeciesPattern();
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rs, isSelected, issueManager);
                                if (i < rs.getNumReactants() - 1) {
                                    spss.addEndText("+");
                                } else {
                                    if (rs.isReversible()) {
                                        spss.addEndText("<->");
                                        extraSpace += 7;
                                    } else {
                                        spss.addEndText("->");
                                    }
                                }
                                int offset = sp == null ? 17 : 15;
                                offset += extraSpace;
                                int w = spss.getWidth();
                                xPos += w + offset;
                                spssList.add(spss);
                            }
                            xPos += 8;
                            for (int i = 0; i < rs.getNumProducts(); i++) {
                                SpeciesPattern sp = rs.getProduct(i).getSpeciesContext().getSpeciesPattern();
                                if (i == 0 && rs.getNumReactants() == 0) {
                                    xPos += 14;
                                }
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rs, isSelected, issueManager);
                                if (i == 0 && rs.getNumReactants() == 0) {
                                    spss.addStartText("->");
                                }
                                if (i < rs.getNumProducts() - 1) {
                                    spss.addEndText("+");
                                }
                                int offset = sp == null ? 17 : 15;
                                int w = spss.getWidth();
                                xPos += w + offset;
                                spssList.add(spss);
                            }
                        }
                    }
                } else {
                    spssList.clear();
                }
            }
            setText("");
            return this;
        }

        @Override
        public void paintComponent(Graphics g) {
            super.paintComponent(g);
            for (SpeciesPatternSmallShape spss : spssList) {
                if (spss == null) {
                    continue;
                }
                spss.paintSelf(g);
            }
        }
    };
    getScrollPaneTable().setDefaultRenderer(SpeciesPattern.class, rbmReactionShapeDepictionCellRenderer);
    // ivjScrollPaneTable.getColumnModel().getColumn(ModelProcessSpecsTableModel.ColumnType.COLUMN_DEPICTION.ordinal()).setCellRenderer(rbmReactionShapeDepictionCellRenderer);
    // ivjScrollPaneTable.getColumnModel().getColumn(ModelProcessSpecsTableModel.ColumnType.COLUMN_DEPICTION.ordinal()).setPreferredWidth(180);
    getScrollPaneTable().getSelectionModel().addListSelectionListener(ivjEventHandler);
}
Also used : VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel) SortTableModel(org.vcell.util.gui.sorttable.SortTableModel) ReactionRule(cbit.vcell.model.ReactionRule) ProductPattern(cbit.vcell.model.ProductPattern) SpeciesPatternSmallShape(cbit.vcell.graph.SpeciesPatternSmallShape) ModelProcessSpec(cbit.vcell.mapping.ModelProcessSpec) ModelProcess(cbit.vcell.model.ModelProcess) SpeciesPattern(org.vcell.model.rbm.SpeciesPattern) Graphics(java.awt.Graphics) VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel) JTable(javax.swing.JTable) ReactionStep(cbit.vcell.model.ReactionStep) DefaultScrollTableCellRenderer(org.vcell.util.gui.DefaultScrollTableCellRenderer) ArrayList(java.util.ArrayList) List(java.util.List) Component(java.awt.Component) VCellSortTableModel(cbit.vcell.client.desktop.biomodel.VCellSortTableModel) TableModel(javax.swing.table.TableModel) SortTableModel(org.vcell.util.gui.sorttable.SortTableModel) ReactantPattern(cbit.vcell.model.ReactantPattern)

Aggregations

TableModel (javax.swing.table.TableModel)3 SortTableModel (org.vcell.util.gui.sorttable.SortTableModel)3 VCellSortTableModel (cbit.vcell.client.desktop.biomodel.VCellSortTableModel)2 SpeciesPatternSmallShape (cbit.vcell.graph.SpeciesPatternSmallShape)2 Graphics (java.awt.Graphics)2 Icon (javax.swing.Icon)2 JTable (javax.swing.JTable)2 SpeciesPattern (org.vcell.model.rbm.SpeciesPattern)2 DefaultScrollTableCellRenderer (org.vcell.util.gui.DefaultScrollTableCellRenderer)2 ModelProcessEquation (cbit.gui.ModelProcessEquation)1 ScopedExpression (cbit.gui.ScopedExpression)1 BioModelEditorApplicationsTableModel (cbit.vcell.client.desktop.biomodel.BioModelEditorApplicationsTableModel)1 BioModelEditorRightSideTableModel (cbit.vcell.client.desktop.biomodel.BioModelEditorRightSideTableModel)1 SpatialObjectTableModel (cbit.vcell.client.desktop.biomodel.SpatialObjectTableModel)1 SpatialProcessTableModel (cbit.vcell.client.desktop.biomodel.SpatialProcessTableModel)1 AssignmentRule (cbit.vcell.mapping.AssignmentRule)1 ModelProcessSpec (cbit.vcell.mapping.ModelProcessSpec)1 RateRule (cbit.vcell.mapping.RateRule)1 SimulationContext (cbit.vcell.mapping.SimulationContext)1 SpeciesContextSpec (cbit.vcell.mapping.SpeciesContextSpec)1