Example 1 with SpatialProcessTableModel
use of cbit.vcell.client.desktop.biomodel.SpatialProcessTableModel in project vcell by virtualcell.
the class DefaultScrollTableCellRenderer method isMatchWithSelectedObject.
private boolean isMatchWithSelectedObject(JTable table, int row) {
SpatialProcessTableModel tm = (SpatialProcessTableModel) table.getModel();
SelectionManager selectionManager = tm.getSelectionManager();
boolean found = false;
if (selectionManager != null) {
for (Object ob : selectionManager.getSelectedObjects()) {
if (ob instanceof SpatialObject) {
// a SpatialObject selected
List<SpatialProcess> spList = ((SpatialObject) ob).getRelatedSpatialProcesses();
for (SpatialProcess theirs : spList) {
SpatialProcess ours = tm.getValueAt(row);
if (ours == theirs) {
found = true;
break;
}
}
}
if (found == true) {
break;
}
}
}
return found;
}
Also used :
SelectionManager(cbit.vcell.client.desktop.biomodel.SelectionManager)
SpatialProcess(cbit.vcell.mapping.spatial.processes.SpatialProcess)
VolumeRegionObject(cbit.vcell.mapping.spatial.VolumeRegionObject)
SpatialObject(cbit.vcell.mapping.spatial.SpatialObject)
PointObject(cbit.vcell.mapping.spatial.PointObject)
SurfaceRegionObject(cbit.vcell.mapping.spatial.SurfaceRegionObject)
SpatialProcessTableModel(cbit.vcell.client.desktop.biomodel.SpatialProcessTableModel)
SpatialObject(cbit.vcell.mapping.spatial.SpatialObject)
Example 2 with SpatialProcessTableModel
use of cbit.vcell.client.desktop.biomodel.SpatialProcessTableModel in project vcell by virtualcell.
the class DefaultScrollTableCellRenderer method getTableCellRendererComponent.
/**
* Insert the method's description here.
* Creation date: (3/27/2001 1:07:02 PM)
* @return java.awt.Component
* @param table javax.swing.JTable
* @param value java.lang.Object
* @param isSelected boolean
* @param hasFocus boolean
* @param row int
* @param column int
*/
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
defaultToolTipText = null;
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
defaultToolTipText = getToolTipText();
setBorder(DEFAULT_GAP);
if (isSelected) {
setBackground(table.getSelectionBackground());
setForeground(table.getSelectionForeground());
} else {
if (table instanceof ScrollTable && ((ScrollTable) table).getHoverRow() == row) {
setBackground(hoverColor);
} else {
setBackground(row % 2 == 0 ? table.getBackground() : everyOtherRowColor);
}
if (table.getModel() instanceof SpatialProcessTableModel) /* && column == SpatialProcessTableModel.COLUMN_SpatialProcess_SPATIALOBJECTS */
{
boolean found = isMatchWithSelectedObject(table, row);
if (found == true) {
setBackground(Color.yellow);
}
} else if (table.getModel() instanceof SpatialObjectTableModel) /* && column == SpatialObjectTableModel.COLUMN_SpatialObject_NAME */
{
boolean found = isMatchWithSelectedProcess(table, row);
if (found == true) {
setBackground(Color.yellow);
}
}
setForeground(table.getForeground());
}
TableModel tableModel = table.getModel();
if (bEnableUneditableForeground && (!table.isEnabled() || !tableModel.isCellEditable(row, column))) {
if (!isSelected) {
setForeground(uneditableForeground);
if (tableModel instanceof NetworkConstraintsTableModel && column == NetworkConstraintsTableModel.iColValue) {
NetworkConstraintsTableModel tm = (NetworkConstraintsTableModel) tableModel;
String def = (String) tm.getValueAt(row, NetworkConstraintsTableModel.iColDefault);
String val = (String) value;
if (!val.equals(def)) {
value = "<html><b>" + value + "</b></html>";
setForeground(Color.red);
}
}
}
}
if (value instanceof Double) {
Double doubleValue = (Double) value;
setText(nicelyFormattedDouble(doubleValue));
} else if (value instanceof JComponent) {
JComponent jc = (JComponent) value;
if (hasFocus) {
jc.setBorder(focusHighlightBorder);
} else {
jc.setBorder(noFocusBorder);
}
return jc;
}
if (BioModelEditorRightSideTableModel.ADD_NEW_HERE_TEXT.equals(value)) {
setText(BioModelEditorRightSideTableModel.ADD_NEW_HERE_HTML);
} else if (value instanceof ModelProcessEquation && BioModelEditorRightSideTableModel.ADD_NEW_HERE_REACTION_TEXT.equals(((ModelProcessEquation) value).toString())) {
setText(BioModelEditorRightSideTableModel.ADD_NEW_REACTION_OR_RULE_HTML);
}
if (tableModel instanceof BioModelEditorApplicationsTableModel) {
// for the applications table we show the icons with the app type
Icon icon = null;
String toolTipSuffix = "";
BioModelEditorApplicationsTableModel bmeatm = (BioModelEditorApplicationsTableModel) tableModel;
SimulationContext simContext = (SimulationContext) (bmeatm.getValueAt(row));
if (simContext.isRuleBased()) {
if (simContext.getGeometry().getDimension() == 0) {
icon = VCellIcons.appRbmNonspIcon;
toolTipSuffix = "Rule Based / Non spatial";
}
} else if (simContext.isStoch()) {
if (simContext.getGeometry().getDimension() == 0) {
icon = VCellIcons.appStoNonspIcon;
toolTipSuffix = "Stochastic / Non spatial";
} else {
icon = VCellIcons.appStoSpatialIcon;
toolTipSuffix = "Stochastic / Spatial";
}
} else {
// deterministic
if (simContext.getGeometry().getDimension() == 0) {
icon = VCellIcons.appDetNonspIcon;
toolTipSuffix = "Deterministic / Non spatial";
} else {
icon = VCellIcons.appDetSpatialIcon;
toolTipSuffix = "Deterministic / Spatial";
}
}
String toolTipPrefix = "Application: ";
setToolTipText(toolTipPrefix + toolTipSuffix);
if (column == 0) {
setIcon(icon);
} else {
setIcon(null);
}
} else if (column == 2 && tableModel instanceof SpatialProcessTableModel) {
Icon icon = null;
SpatialProcess spatialProcess = (SpatialProcess) (((SpatialProcessTableModel) tableModel).getValueAt(row));
if (spatialProcess instanceof PointLocation) {
icon = VCellIcons.spatialPointIcon;
} else if (spatialProcess instanceof PointKinematics) {
icon = VCellIcons.spatialPointIcon;
} else if (spatialProcess instanceof SurfaceKinematics) {
icon = VCellIcons.spatialMembraneIcon;
} else {
icon = VCellIcons.spatialVolumeIcon;
}
setIcon(icon);
} else if (tableModel instanceof SortTableModel) {
// for most other tables we reserve the icon spot to display issues
DefaultScrollTableCellRenderer.issueRenderer(this, defaultToolTipText, table, row, column, (SortTableModel) tableModel);
}
return this;
}
Also used :
SortTableModel(org.vcell.util.gui.sorttable.SortTableModel)
PointLocation(cbit.vcell.mapping.spatial.processes.PointLocation)
SurfaceKinematics(cbit.vcell.mapping.spatial.processes.SurfaceKinematics)
JComponent(javax.swing.JComponent)
NetworkConstraintsTableModel(cbit.vcell.mapping.gui.NetworkConstraintsTableModel)
SpatialObjectTableModel(cbit.vcell.client.desktop.biomodel.SpatialObjectTableModel)
SimulationContext(cbit.vcell.mapping.SimulationContext)
BioModelEditorApplicationsTableModel(cbit.vcell.client.desktop.biomodel.BioModelEditorApplicationsTableModel)
SpatialProcess(cbit.vcell.mapping.spatial.processes.SpatialProcess)
PointKinematics(cbit.vcell.mapping.spatial.processes.PointKinematics)
ModelProcessEquation(cbit.gui.ModelProcessEquation)
SpatialProcessTableModel(cbit.vcell.client.desktop.biomodel.SpatialProcessTableModel)
Icon(javax.swing.Icon)
BioModelEditorRightSideTableModel(cbit.vcell.client.desktop.biomodel.BioModelEditorRightSideTableModel)
BioModelEditorApplicationsTableModel(cbit.vcell.client.desktop.biomodel.BioModelEditorApplicationsTableModel)
NetworkConstraintsTableModel(cbit.vcell.mapping.gui.NetworkConstraintsTableModel)
SpatialProcessTableModel(cbit.vcell.client.desktop.biomodel.SpatialProcessTableModel)
TableModel(javax.swing.table.TableModel)
SortTableModel(org.vcell.util.gui.sorttable.SortTableModel)
SpatialObjectTableModel(cbit.vcell.client.desktop.biomodel.SpatialObjectTableModel)
Example 3 with SpatialProcessTableModel
use of cbit.vcell.client.desktop.biomodel.SpatialProcessTableModel in project vcell by virtualcell.
the class DefaultScrollTableCellRenderer method issueRenderer.
public static void issueRenderer(JLabel renderer, String defaultToolTipText, JTable table, int row, int column, SortTableModel tableModel) {
List<Issue> issueListError = tableModel.getIssues(row, column, Issue.Severity.ERROR);
List<Issue> issueListWarning = tableModel.getIssues(row, column, Issue.Severity.WARNING);
Icon icon = null;
Point mousePosition = table.getMousePosition();
// hue, saturation, brightness
Color red = Color.getHSBColor(0f, 0.4f, 1.0f);
if (issueListError.size() > 0) {
if (column == 0) {
icon = VCellIcons.issueErrorIcon;
if (mousePosition != null && mousePosition.getX() > LEFT_ICON_MARGIN && mousePosition.getX() <= (icon.getIconWidth() + LEFT_ICON_MARGIN)) {
String tt = Issue.getHtmlIssueMessage(issueListError);
renderer.setToolTipText(tt);
} else {
renderer.setToolTipText(defaultToolTipText);
}
// Color.red
renderer.setBorder(new MatteBorder(1, 1, 1, 0, red));
} else if (column == table.getColumnCount() - 1) {
renderer.setBorder(new MatteBorder(1, 0, 1, 1, red));
} else {
renderer.setBorder(new MatteBorder(1, 0, 1, 0, red));
}
} else if (issueListWarning.size() > 0) {
if (column == 0) {
icon = VCellIcons.issueWarningIcon;
if (mousePosition != null && mousePosition.getX() > LEFT_ICON_MARGIN && mousePosition.getX() <= (icon.getIconWidth() + LEFT_ICON_MARGIN)) {
renderer.setToolTipText(Issue.getHtmlIssueMessage(issueListWarning));
} else {
renderer.setToolTipText(defaultToolTipText);
}
renderer.setBorder(new MatteBorder(1, 1, 1, 0, Color.orange));
} else if (column == table.getColumnCount() - 1) {
renderer.setBorder(new MatteBorder(1, 0, 1, 1, Color.orange));
} else {
renderer.setBorder(new MatteBorder(1, 0, 1, 0, Color.orange));
}
} else {
if (column == 0) {
icon = VCellIcons.issueGoodIcon;
// no tooltip for column 0 when we have no issues on that line
renderer.setToolTipText(null);
}
if (column != 0 && defaultToolTipText != null && !defaultToolTipText.isEmpty()) {
renderer.setToolTipText(defaultToolTipText);
} else {
renderer.setToolTipText(null);
}
renderer.setBorder(DEFAULT_GAP);
}
if (column == 0 && icon != null) {
// for some tables we combine (concatenate) the issue icon with an entity icon
if (tableModel instanceof SpatialProcessTableModel) {
Icon icon2 = null;
SpatialProcess spatialProcess = (SpatialProcess) (((SpatialProcessTableModel) tableModel).getValueAt(row));
if (spatialProcess instanceof PointLocation) {
icon2 = VCellIcons.spatialLocationIcon;
} else if (spatialProcess instanceof PointKinematics) {
icon2 = VCellIcons.spatialKinematicsIcon;
} else if (spatialProcess instanceof SurfaceKinematics) {
icon2 = VCellIcons.spatialKinematicsIcon;
} else {
icon2 = VCellIcons.spatialKinematicsIcon;
}
icon = VCellIcons.addIcon(icon, icon2);
} else if (tableModel instanceof SpatialObjectTableModel) {
Icon icon2 = null;
SpatialObject spatialObject = (SpatialObject) (((SpatialObjectTableModel) tableModel).getValueAt(row));
if (spatialObject instanceof PointObject) {
icon2 = VCellIcons.spatialPointIcon;
} else if (spatialObject instanceof SurfaceRegionObject) {
icon2 = VCellIcons.spatialMembraneIcon;
} else if (spatialObject instanceof VolumeRegionObject) {
icon2 = VCellIcons.spatialVolumeIcon;
} else {
icon2 = VCellIcons.spatialVolumeIcon;
}
icon = VCellIcons.addIcon(icon, icon2);
}
}
renderer.setIcon(icon);
}
Also used :
VolumeRegionObject(cbit.vcell.mapping.spatial.VolumeRegionObject)
Issue(org.vcell.util.Issue)
PointLocation(cbit.vcell.mapping.spatial.processes.PointLocation)
SurfaceKinematics(cbit.vcell.mapping.spatial.processes.SurfaceKinematics)
Color(java.awt.Color)
Point(java.awt.Point)
SpatialObjectTableModel(cbit.vcell.client.desktop.biomodel.SpatialObjectTableModel)
SpatialObject(cbit.vcell.mapping.spatial.SpatialObject)
MatteBorder(javax.swing.border.MatteBorder)
PointObject(cbit.vcell.mapping.spatial.PointObject)
SpatialProcess(cbit.vcell.mapping.spatial.processes.SpatialProcess)
PointKinematics(cbit.vcell.mapping.spatial.processes.PointKinematics)
Icon(javax.swing.Icon)
SpatialProcessTableModel(cbit.vcell.client.desktop.biomodel.SpatialProcessTableModel)
SurfaceRegionObject(cbit.vcell.mapping.spatial.SurfaceRegionObject)
Aggregations
SpatialProcessTableModel (cbit.vcell.client.desktop.biomodel.SpatialProcessTableModel)3
SpatialProcess (cbit.vcell.mapping.spatial.processes.SpatialProcess)3
SpatialObjectTableModel (cbit.vcell.client.desktop.biomodel.SpatialObjectTableModel)2
PointObject (cbit.vcell.mapping.spatial.PointObject)2
SpatialObject (cbit.vcell.mapping.spatial.SpatialObject)2
SurfaceRegionObject (cbit.vcell.mapping.spatial.SurfaceRegionObject)2
VolumeRegionObject (cbit.vcell.mapping.spatial.VolumeRegionObject)2
PointKinematics (cbit.vcell.mapping.spatial.processes.PointKinematics)2
PointLocation (cbit.vcell.mapping.spatial.processes.PointLocation)2
SurfaceKinematics (cbit.vcell.mapping.spatial.processes.SurfaceKinematics)2
Icon (javax.swing.Icon)2
ModelProcessEquation (cbit.gui.ModelProcessEquation)1
BioModelEditorApplicationsTableModel (cbit.vcell.client.desktop.biomodel.BioModelEditorApplicationsTableModel)1
BioModelEditorRightSideTableModel (cbit.vcell.client.desktop.biomodel.BioModelEditorRightSideTableModel)1
SelectionManager (cbit.vcell.client.desktop.biomodel.SelectionManager)1
SimulationContext (cbit.vcell.mapping.SimulationContext)1
NetworkConstraintsTableModel (cbit.vcell.mapping.gui.NetworkConstraintsTableModel)1
Color (java.awt.Color)1
Point (java.awt.Point)1
JComponent (javax.swing.JComponent)1
