use of org.vcell.util.gui.DefaultScrollTableCellRenderer in project vcell by virtualcell.
the class SimulationListPanel method initConnections.
/**
* Initializes connections
* @exception java.lang.Exception The exception description.
*/
/* WARNING: THIS METHOD WILL BE REGENERATED. */
private void initConnections() throws java.lang.Exception {
// user code begin {1}
// user code end
getNewButton().addActionListener(ivjEventHandler);
getEditButton().addActionListener(ivjEventHandler);
getDeleteButton().addActionListener(ivjEventHandler);
getRunButton().addActionListener(ivjEventHandler);
getMassConservationModelReductionCheckBox().addActionListener(ivjEventHandler);
getMassConservationModelReductionHelpButton().addActionListener(ivjEventHandler);
// getPythonResultsButton().addActionListener(ivjEventHandler);
getNativeResultsButton().addActionListener(ivjEventHandler);
getMoreActionsButton().addActionListener(ivjEventHandler);
getScrollPaneTable().addPropertyChangeListener(ivjEventHandler);
getOutputFunctionsPanel().addPropertyChangeListener(ivjEventHandler);
getScrollPaneTable().getSelectionModel().addListSelectionListener(ivjEventHandler);
DefaultScrollTableCellRenderer renderer = new DefaultScrollTableCellRenderer() {
@Override
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
if (value instanceof OutputTimeSpec) {
SimulationWorkspace sw = getSimulationWorkspace();
SimulationOwner so = sw.getSimulationOwner();
UnitInfo unitInfo = so.getUnitInfo();
Objects.requireNonNull(unitInfo);
OutputTimeSpec ots = (OutputTimeSpec) value;
String text = ots.describe(unitInfo);
setText(text);
} else if (value instanceof Double) {
setText(value + "");
}
boolean bFinitVolumeRerun = false;
if (value instanceof SolverDescription) {
SolverDescription solverDescription = (SolverDescription) value;
try {
if (FINITEVOLUME_CUTTOFF != null && solverDescription.equals(SolverDescription.FiniteVolume)) /*Compiled Solver*/
{
SimulationStatus simStatus = getSimulationWorkspace().getSimulationStatus(getSimulationListTableModel1().getValueAt(row));
if (simStatus.getHasData()) {
int statusIndex = 0;
while (simStatus.getJobStatus(statusIndex) != null) {
if (simStatus.getJobStatus(statusIndex).getEndDate().compareTo(FINITEVOLUME_CUTTOFF) > 0) {
bFinitVolumeRerun = true;
break;
}
statusIndex++;
}
}
}
} catch (Exception e) {
// ignore, let table cell render anyway
e.printStackTrace();
}
setText(solverDescription.getShortDisplayLabel());
setToolTipText(solverDescription.getDisplayLabel());
} else {
setToolTipText(getText());
}
if (bFinitVolumeRerun) {
setText(getText() + (bFinitVolumeRerun ? "(*)" : ""));
setToolTipText(getToolTipText() + (bFinitVolumeRerun ? " (data regenerated using FiniteVolumeStandalone)" : ""));
}
return this;
}
};
getScrollPaneTable().setDefaultRenderer(OutputTimeSpec.class, renderer);
getScrollPaneTable().setDefaultRenderer(Double.class, renderer);
getScrollPaneTable().setDefaultRenderer(String.class, renderer);
getScrollPaneTable().setDefaultRenderer(SolverDescription.class, renderer);
getScrollPaneTable().setDefaultEditor(OutputTimeSpec.class, new DefaultCellEditor(new JTextField()));
getScrollPaneTable().setDefaultRenderer(SimulationStatus.class, new DefaultScrollTableCellRenderer() {
@Override
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
Object obj = getSimulationStatusDisplay(row);
if (obj instanceof JProgressBar) {
return (JProgressBar) obj;
}
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
if (value instanceof SimulationStatus) {
setText(obj.toString());
String details = ((SimulationStatus) value).getDetails();
setToolTipText(details);
}
return this;
}
});
}
use of org.vcell.util.gui.DefaultScrollTableCellRenderer in project vcell by virtualcell.
the class OutputFunctionsPanel method initConnections.
private void initConnections() {
getAddFnButton().addActionListener(ivjEventHandler);
getDeleteFnButton().addActionListener(ivjEventHandler);
getFnScrollPaneTable().getSelectionModel().addListSelectionListener(ivjEventHandler);
this.addPropertyChangeListener(ivjEventHandler);
getSubdomainComboBox().addActionListener(ivjEventHandler);
// for scrollPaneTable, set tableModel and create default columns
outputFnsListTableModel = new OutputFunctionsListTableModel(outputFnsScrollPaneTable);
getFnScrollPaneTable().setModel(outputFnsListTableModel);
getFnScrollPaneTable().createDefaultColumnsFromModel();
getFnScrollPaneTable().setDefaultRenderer(String.class, new DefaultScrollTableCellRenderer() {
@Override
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
if (column == OutputFunctionsListTableModel.COLUMN_OUTPUTFN_NAME) {
setIcon(VCellIcons.getOutputFunctionIcon());
} else {
setIcon(null);
}
return this;
}
});
}
use of org.vcell.util.gui.DefaultScrollTableCellRenderer in project vcell by virtualcell.
the class ViewGeneratedSpeciesPanel method initialize.
private void initialize() {
try {
setName("ViewGeneratedSpeciesPanel");
setLayout(new GridBagLayout());
shapePanel = new LargeShapePanel() {
@Override
public void paintComponent(Graphics g) {
super.paintComponent(g);
if (spls != null) {
spls.paintSelf(g);
}
}
@Override
public DisplayMode getDisplayMode() {
return DisplayMode.other;
}
@Override
public RuleAnalysisChanged hasStateChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasStateChanged(MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasBondChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasBondChanged(MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasNoMatch(String reactionRuleName, MolecularTypePattern mtp) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasNoMatch(MolecularTypePattern molecularTypePattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleParticipantSignature getSignature() {
return null;
}
@Override
public GroupingCriteria getCriteria() {
return null;
}
@Override
public boolean isViewSingleRow() {
return true;
}
};
Border loweredBevelBorder = BorderFactory.createLoweredBevelBorder();
shapePanel.setLayout(new GridBagLayout());
shapePanel.setBackground(Color.white);
// not really editable but we don't want the brown contours here
shapePanel.setEditable(true);
shapePanel.setShowMoleculeColor(true);
shapePanel.setShowNonTrivialOnly(true);
JScrollPane scrollPane = new JScrollPane(shapePanel);
scrollPane.setBorder(loweredBevelBorder);
scrollPane.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
scrollPane.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_NEVER);
JPanel optionsPanel = new JPanel();
optionsPanel.setLayout(new GridBagLayout());
getZoomSmallerButton().setEnabled(true);
getZoomLargerButton().setEnabled(false);
GridBagConstraints gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 0;
gbc.insets = new Insets(0, 0, 0, 10);
gbc.anchor = GridBagConstraints.WEST;
optionsPanel.add(getZoomLargerButton(), gbc);
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 1;
gbc.insets = new Insets(2, 0, 4, 10);
gbc.anchor = GridBagConstraints.WEST;
optionsPanel.add(getZoomSmallerButton(), gbc);
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 2;
gbc.weightx = 1;
// fake cell used for filling all the vertical empty space
gbc.weighty = 1;
gbc.anchor = GridBagConstraints.WEST;
gbc.insets = new Insets(4, 4, 4, 10);
optionsPanel.add(new JLabel(""), gbc);
JPanel containerOfScrollPanel = new JPanel();
containerOfScrollPanel.setLayout(new BorderLayout());
containerOfScrollPanel.add(optionsPanel, BorderLayout.WEST);
containerOfScrollPanel.add(scrollPane, BorderLayout.CENTER);
Dimension dim = new Dimension(500, 135);
// dimension of shape panel
containerOfScrollPanel.setPreferredSize(dim);
containerOfScrollPanel.setMinimumSize(dim);
containerOfScrollPanel.setMaximumSize(dim);
// ------------------------------------------------------------------------
table = new EditorScrollTable();
tableModel = new GeneratedSpeciesTableModel(table, owner);
table.setModel(tableModel);
table.getSelectionModel().addListSelectionListener(eventHandler);
table.getModel().addTableModelListener(eventHandler);
DefaultTableCellRenderer rightRenderer = new DefaultTableCellRenderer();
rightRenderer.setHorizontalAlignment(JLabel.RIGHT);
int gridy = 0;
gbc = new java.awt.GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.weightx = 1.0;
gbc.weighty = 1.0;
gbc.gridwidth = 8;
gbc.fill = GridBagConstraints.BOTH;
gbc.insets = new Insets(4, 4, 4, 4);
table.setPreferredScrollableViewportSize(new Dimension(400, 200));
add(table.getEnclosingScrollPane(), gbc);
// gbc = new java.awt.GridBagConstraints();
// gbc.gridx = 9;
// gbc.gridy = gridy;
// add toolTipText for each table cell
table.addMouseMotionListener(new MouseMotionAdapter() {
public void mouseMoved(MouseEvent e) {
Point p = e.getPoint();
int row = table.rowAtPoint(p);
int column = table.columnAtPoint(p);
table.setToolTipText(String.valueOf(table.getValueAt(row, column)));
}
});
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.anchor = GridBagConstraints.LINE_END;
gbc.insets = new Insets(4, 4, 4, 4);
add(new JLabel("Search "), gbc);
textFieldSearch = new JTextField(70);
textFieldSearch.addActionListener(eventHandler);
textFieldSearch.getDocument().addDocumentListener(eventHandler);
textFieldSearch.putClientProperty("JTextField.variant", "search");
gbc = new java.awt.GridBagConstraints();
gbc.weightx = 1.0;
gbc.gridx = 1;
gbc.gridy = gridy;
gbc.gridwidth = 3;
gbc.anchor = GridBagConstraints.LINE_START;
gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
gbc.insets = new Insets(4, 0, 4, 4);
add(textFieldSearch, gbc);
gbc = new GridBagConstraints();
gbc.gridx = 4;
gbc.gridy = gridy;
gbc.fill = GridBagConstraints.HORIZONTAL;
gbc.insets = new Insets(4, 4, 4, 10);
add(totalSpeciesLabel, gbc);
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
// gbc.weightx = 1.0;
gbc.gridwidth = 8;
gbc.anchor = GridBagConstraints.LINE_END;
gbc.fill = java.awt.GridBagConstraints.BOTH;
gbc.insets = new Insets(4, 4, 4, 4);
add(containerOfScrollPanel, gbc);
// rendering the small shapes of the flattened species in the Depiction column of this viewer table)
// TODO: this renderer is almost identical with the one in BioModelEditorModelPanel (which paints the small shapes
// of a species context in the Depiction column of the species table)
DefaultScrollTableCellRenderer rbmSpeciesShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {
SpeciesPatternSmallShape spss = null;
@Override
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
if (table.getModel() instanceof VCellSortTableModel<?>) {
Object selectedObject = null;
if (table.getModel() == tableModel) {
selectedObject = tableModel.getValueAt(row);
}
if (selectedObject != null) {
if (selectedObject instanceof GeneratedSpeciesTableRow) {
SpeciesContext sc = ((GeneratedSpeciesTableRow) selectedObject).getSpecies();
// sp cannot be null
SpeciesPattern sp = sc.getSpeciesPattern();
Graphics panelContext = table.getGraphics();
spss = new SpeciesPatternSmallShape(4, 2, sp, panelContext, sc, isSelected, issueManager);
}
} else {
spss = null;
}
}
setText("");
return this;
}
@Override
public void paintComponent(Graphics g) {
super.paintComponent(g);
if (spss != null) {
spss.paintSelf(g);
}
}
};
table.getColumnModel().getColumn(GeneratedSpeciesTableModel.iColDepiction).setCellRenderer(rbmSpeciesShapeDepictionCellRenderer);
table.getColumnModel().getColumn(GeneratedSpeciesTableModel.iColDepiction).setPreferredWidth(400);
table.getColumnModel().getColumn(GeneratedSpeciesTableModel.iColDepiction).setMinWidth(400);
table.getColumnModel().getColumn(GeneratedReactionTableModel.iColDefinition).setPreferredWidth(30);
table.setAutoResizeMode(JTable.AUTO_RESIZE_LAST_COLUMN);
} catch (java.lang.Throwable ivjExc) {
handleException(ivjExc);
}
}
use of org.vcell.util.gui.DefaultScrollTableCellRenderer in project vcell by virtualcell.
the class ViewGeneratedReactionsPanel method initialize.
private void initialize() {
try {
setName("ViewGeneratedReactionsPanel");
setLayout(new GridBagLayout());
shapePanel = new RulesShapePanel() {
@Override
public void paintComponent(Graphics g) {
super.paintComponent(g);
for (AbstractComponentShape stls : reactantPatternShapeList) {
stls.paintSelf(g);
}
for (AbstractComponentShape stls : productPatternShapeList) {
stls.paintSelf(g);
}
}
};
Border loweredEtchedBorder = BorderFactory.createEtchedBorder(EtchedBorder.LOWERED);
Border loweredBevelBorder = BorderFactory.createLoweredBevelBorder();
shapePanel.setLayout(new GridBagLayout());
shapePanel.setBackground(Color.white);
// don't show the brown contour even though it's not editable
shapePanel.setEditable(true);
shapePanel.setShowMoleculeColor(true);
shapePanel.setShowNonTrivialOnly(true);
JScrollPane scrollPane = new JScrollPane(shapePanel);
scrollPane.setBorder(loweredBevelBorder);
scrollPane.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
scrollPane.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_NEVER);
JPanel optionsPanel = new JPanel();
optionsPanel.setLayout(new GridBagLayout());
getZoomSmallerButton().setEnabled(true);
getZoomLargerButton().setEnabled(false);
GridBagConstraints gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 0;
gbc.insets = new Insets(0, 0, 0, 10);
gbc.anchor = GridBagConstraints.WEST;
optionsPanel.add(getZoomLargerButton(), gbc);
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 1;
gbc.insets = new Insets(2, 0, 4, 10);
gbc.anchor = GridBagConstraints.WEST;
optionsPanel.add(getZoomSmallerButton(), gbc);
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 2;
gbc.weightx = 1;
// fake cell used for filling all the vertical empty space
gbc.weighty = 1;
gbc.anchor = GridBagConstraints.WEST;
gbc.insets = new Insets(4, 4, 4, 10);
optionsPanel.add(new JLabel(""), gbc);
JPanel containerOfScrollPanel = new JPanel();
containerOfScrollPanel.setLayout(new BorderLayout());
containerOfScrollPanel.add(optionsPanel, BorderLayout.WEST);
containerOfScrollPanel.add(scrollPane, BorderLayout.CENTER);
Dimension dim = new Dimension(500, 140);
// dimension of shape panel
containerOfScrollPanel.setPreferredSize(dim);
containerOfScrollPanel.setMinimumSize(dim);
containerOfScrollPanel.setMaximumSize(dim);
// -----------------------------------------------------------------------------
table = new EditorScrollTable();
tableModel = new GeneratedReactionTableModel(table, owner);
table.setModel(tableModel);
table.getSelectionModel().addListSelectionListener(eventHandler);
table.getModel().addTableModelListener(eventHandler);
DefaultTableCellRenderer rightRenderer = new DefaultTableCellRenderer();
rightRenderer.setHorizontalAlignment(JLabel.RIGHT);
// table.getColumnModel().getColumn(GeneratedReactionTableModel.iColIndex).setCellRenderer(rightRenderer); // right align first table column
// table.getColumnModel().getColumn(GeneratedReactionTableModel.iColIndex).setMaxWidth(60); // left column wide enough for 6-7 digits
int gridy = 0;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.weightx = 1.0;
gbc.weighty = 1.0;
gbc.gridwidth = 8;
gbc.fill = GridBagConstraints.BOTH;
gbc.insets = new Insets(4, 4, 4, 4);
// table.setPreferredScrollableViewportSize(new Dimension(400,200));
add(table.getEnclosingScrollPane(), gbc);
// add toolTipText for each table cell
table.addMouseMotionListener(new MouseMotionAdapter() {
public void mouseMoved(MouseEvent e) {
Point p = e.getPoint();
int row = table.rowAtPoint(p);
int column = table.columnAtPoint(p);
table.setToolTipText(String.valueOf(table.getValueAt(row, column)));
}
});
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.anchor = GridBagConstraints.LINE_END;
gbc.insets = new Insets(4, 4, 4, 4);
add(new JLabel("Search "), gbc);
textFieldSearch = new JTextField(70);
textFieldSearch.addActionListener(eventHandler);
textFieldSearch.getDocument().addDocumentListener(eventHandler);
textFieldSearch.putClientProperty("JTextField.variant", "search");
gbc = new GridBagConstraints();
gbc.weightx = 1.0;
gbc.gridx = 1;
gbc.gridy = gridy;
gbc.gridwidth = 3;
gbc.anchor = GridBagConstraints.LINE_START;
gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
gbc.insets = new Insets(4, 0, 4, 4);
add(textFieldSearch, gbc);
gbc = new GridBagConstraints();
gbc.gridx = 4;
gbc.gridy = gridy;
gbc.fill = GridBagConstraints.HORIZONTAL;
gbc.insets = new Insets(4, 4, 4, 10);
add(totalReactionsLabel, gbc);
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
// gbc.weightx = 1.0;
// gbc.weighty = 1.0;
gbc.gridwidth = 8;
gbc.anchor = GridBagConstraints.LINE_END;
gbc.fill = java.awt.GridBagConstraints.BOTH;
gbc.insets = new Insets(4, 4, 4, 4);
add(containerOfScrollPanel, gbc);
// rendering the small shapes of a fake rule in the Depiction column of this viewer table)
// TODO: this renderer is almost identical with the one in BioModelEditorModelPanel (which paints the small shapes
// of a rule in the Depiction column of the reaction table)
DefaultScrollTableCellRenderer rbmReactionShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {
List<SpeciesPatternSmallShape> spssList = new ArrayList<SpeciesPatternSmallShape>();
SpeciesPatternSmallShape spss = null;
@Override
public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
if (table.getModel() instanceof VCellSortTableModel<?>) {
Object selectedObject = null;
if (table.getModel() == tableModel) {
selectedObject = tableModel.getValueAt(row);
}
if (selectedObject != null) {
if (selectedObject instanceof GeneratedReactionTableRow) {
ReactionRule rr = ((GeneratedReactionTableRow) selectedObject).getReactionRule();
Graphics panelContext = table.getGraphics();
BioModel bioModel = owner.getSimulationContext().getBioModel();
spssList.clear();
List<ReactantPattern> rpList = rr.getReactantPatterns();
int xPos = 4;
for (int i = 0; i < rpList.size(); i++) {
SpeciesPattern sp = rr.getReactantPattern(i).getSpeciesPattern();
spss = new SpeciesPatternSmallShape(xPos, 2, sp, null, panelContext, rr, isSelected, issueManager);
if (i < rpList.size() - 1) {
spss.addEndText("+");
} else {
if (rr.isReversible()) {
spss.addEndText("<->");
xPos += 7;
} else {
spss.addEndText("->");
}
}
xPos += spss.getWidth() + 14;
spssList.add(spss);
}
List<ProductPattern> ppList = rr.getProductPatterns();
xPos += 7;
for (int i = 0; i < ppList.size(); i++) {
SpeciesPattern sp = rr.getProductPattern(i).getSpeciesPattern();
spss = new SpeciesPatternSmallShape(xPos, 2, sp, null, panelContext, rr, isSelected, issueManager);
if (i < ppList.size() - 1) {
spss.addEndText("+");
}
xPos += spss.getWidth() + 14;
spssList.add(spss);
}
}
} else {
spssList.clear();
}
}
setText("");
return this;
}
@Override
public void paintComponent(Graphics g) {
super.paintComponent(g);
for (SpeciesPatternSmallShape spss : spssList) {
if (spss == null) {
continue;
}
spss.paintSelf(g);
}
}
};
table.getColumnModel().getColumn(GeneratedReactionTableModel.iColDepiction).setCellRenderer(rbmReactionShapeDepictionCellRenderer);
table.getColumnModel().getColumn(GeneratedReactionTableModel.iColDepiction).setPreferredWidth(400);
table.getColumnModel().getColumn(GeneratedReactionTableModel.iColDepiction).setMinWidth(400);
table.getColumnModel().getColumn(GeneratedReactionTableModel.iColDefinition).setPreferredWidth(30);
table.setAutoResizeMode(JTable.AUTO_RESIZE_LAST_COLUMN);
} catch (java.lang.Throwable ivjExc) {
handleException(ivjExc);
}
}
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